Wall clock time and date at job start Tue Mar 31 2020 18:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46775 * 2 1 4 4 N 1.29937 * 125.37480 * 89.99804 * 3 2 1 5 5 C 1.36080 * 108.47522 * 179.97438 * 4 3 2 6 6 C 1.47415 * 126.44557 * 179.97438 * 5 4 3 7 7 O 1.21617 * 119.99564 * 174.23165 * 6 5 4 8 8 N 1.34778 * 120.00530 * 353.95789 * 6 5 4 9 9 C 1.49721 * 122.75344 * 353.95263 * 8 6 5 10 10 C 1.53161 * 105.59768 * 111.59186 * 9 8 6 11 11 C 1.50957 * 111.96188 * 99.83568 * 10 9 8 12 12 H 1.08997 * 109.52495 * 58.24194 * 11 10 9 13 13 C 1.53585 * 111.30794 * 178.50698 * 11 10 9 14 14 N 1.47173 * 105.65249 * 150.28764 * 13 11 10 15 15 C 1.36934 * 126.09953 * 149.76181 * 14 13 11 16 16 H 1.07994 * 120.00412 * 345.97683 * 15 14 13 17 17 C 1.38817 * 120.00027 * 165.97955 * 15 14 13 18 18 N 1.31622 * 119.99824 * 340.78345 * 17 15 14 19 19 Si 1.86796 * 120.00294 * 160.78447 * 17 15 14 20 20 H 1.48498 * 109.46851 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47222 * 119.99803 * 19 17 15 22 22 H 1.48496 * 109.47106 * 240.00137 * 19 17 15 23 23 C 1.46779 * 107.79836 * 329.73725 * 14 13 11 24 24 C 1.53829 * 107.91272 * 20.29752 * 23 14 13 25 25 H 1.09000 * 111.55316 * 118.11063 * 24 23 14 26 26 C 1.51859 * 109.23185 * 241.13256 * 24 23 14 27 27 C 1.43636 * 122.75415 * 173.66430 * 8 6 5 28 28 C 1.36095 * 107.09753 * 0.22813 * 5 4 3 29 29 O 1.34049 * 125.37867 * 269.99741 * 3 2 1 30 30 H 1.09002 * 109.46846 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47570 * 299.99752 * 1 2 3 32 32 H 1.08999 * 109.47401 * 60.00494 * 1 2 3 33 33 H 1.08997 * 109.47466 * 239.99839 * 2 1 3 34 34 H 1.09002 * 109.46761 * 119.99864 * 2 1 3 35 35 H 1.09007 * 110.21373 * 230.61014 * 9 8 6 36 36 H 1.09006 * 110.21698 * 352.42975 * 9 8 6 37 37 H 1.09003 * 108.98435 * 220.47185 * 10 9 8 38 38 H 1.09000 * 108.98380 * 339.27460 * 10 9 8 39 39 H 1.08995 * 110.21102 * 269.32898 * 13 11 10 40 40 H 1.08998 * 110.21537 * 31.24064 * 13 11 10 41 41 H 0.97002 * 119.99929 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.77971 * 260.67900 * 23 14 13 43 43 H 1.09007 * 109.77923 * 139.90957 * 23 14 13 44 44 H 1.09001 * 108.91659 * 320.64653 * 26 24 23 45 45 H 1.08996 * 108.92133 * 79.29555 * 26 24 23 46 46 H 1.08990 * 108.42895 * 359.35363 * 27 8 6 47 47 H 1.09002 * 108.42342 * 116.61969 * 27 8 6 48 48 H 1.07997 * 126.52068 * 179.77670 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2829 2.1301 1.0595 5 6 2.7174 3.3575 0.6639 6 6 3.1112 4.4726 1.5440 7 8 3.5827 5.4868 1.0663 8 7 2.9437 4.3704 2.8774 9 6 2.2454 3.2122 3.5197 10 6 3.3312 2.4491 4.2842 11 6 3.3213 2.7781 5.7575 12 1 2.3438 2.5407 6.1772 13 6 4.3909 1.9776 6.5152 14 7 4.7890 2.8236 7.6518 15 6 5.2291 2.3821 8.8710 16 1 5.0982 1.3471 9.1500 17 6 5.8435 3.2650 9.7485 18 7 6.3440 4.3968 9.3003 19 14 5.9600 2.8468 11.5653 20 1 5.3252 1.5270 11.8111 21 1 7.3877 2.7930 11.9703 22 1 5.2593 3.8881 12.3589 23 6 4.6306 4.2250 7.2451 24 6 3.6639 4.2643 6.0492 25 1 2.7642 4.8347 6.2801 26 6 4.3819 4.8468 4.8445 27 6 3.4259 5.3607 3.7993 28 6 2.7145 3.3635 -0.6970 29 8 2.2910 2.1526 -1.0930 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.4797 3.5691 4.2086 36 1 1.7978 2.5730 2.7585 37 1 3.1674 1.3788 4.1589 38 1 4.3055 2.7093 3.8705 39 1 3.9734 1.0369 6.8741 40 1 5.2477 1.7879 5.8688 41 1 6.7737 5.0136 9.9134 42 1 5.5969 4.6355 6.9520 43 1 4.2189 4.8047 8.0714 44 1 5.0187 5.6673 5.1753 45 1 5.0063 4.0735 4.3972 46 1 3.9277 6.1444 3.2319 47 1 2.5696 5.8037 4.3080 48 1 3.0004 4.1853 -1.3367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946559107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:30 Heat of formation + Delta-G solvation = 0.087944 kcal Electronic energy + Delta-G solvation = -29579.767199 eV Core-core repulsion = 25636.461852 eV Total energy + Delta-G solvation = -3943.305347 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.48165 -41.46474 -39.89159 -37.32422 -36.11046 -34.91064 -34.74181 -33.48087 -32.54551 -30.57309 -29.28010 -28.81058 -26.45747 -25.37031 -25.19854 -24.08776 -23.25893 -22.15667 -22.10099 -20.66096 -19.70768 -18.98624 -18.70468 -17.94482 -17.65722 -17.13758 -16.83259 -16.50927 -16.22122 -15.70622 -15.54172 -15.38278 -15.07711 -14.79889 -14.60717 -14.41567 -14.39122 -14.00841 -13.75307 -13.52639 -13.31213 -13.21247 -12.97742 -12.75436 -12.57710 -12.48213 -12.41902 -12.27256 -12.10209 -11.98957 -11.94311 -11.74121 -11.65444 -11.41969 -11.24066 -10.98496 -10.82903 -10.63639 -10.11106 -9.67454 -8.87213 -7.91656 -5.24737 0.06121 0.92871 1.44589 1.45989 1.57280 1.57826 1.89588 2.15720 2.49243 2.79183 3.25305 3.44628 3.67290 3.75004 3.78886 3.87648 3.98020 4.03026 4.18614 4.25738 4.31450 4.35248 4.40950 4.49635 4.59698 4.60781 4.67128 4.71424 4.73288 4.75425 4.91964 4.93420 4.99482 5.03662 5.05759 5.10960 5.14764 5.22383 5.29301 5.32848 5.40738 5.47703 5.55081 5.62511 5.69517 5.75161 6.19142 6.28068 6.49296 6.98510 7.05737 7.75848 8.46119 9.20709 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019957 B = 0.002769 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.695114 B =10111.244255 C =11159.216862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.029 4.029 3 C 0.205 3.795 4 N -0.473 5.473 5 C -0.095 4.095 6 C 0.602 3.398 7 O -0.575 6.575 8 N -0.592 5.592 9 C 0.098 3.902 10 C -0.107 4.107 11 C -0.082 4.082 12 H 0.078 0.922 13 C 0.134 3.866 14 N -0.619 5.619 15 C -0.248 4.248 16 H 0.079 0.921 17 C -0.062 4.062 18 N -0.942 5.942 19 Si 0.973 3.027 20 H -0.263 1.263 21 H -0.293 1.293 22 H -0.291 1.291 23 C 0.184 3.816 24 C -0.089 4.089 25 H 0.086 0.914 26 C -0.113 4.113 27 C 0.118 3.882 28 C 0.028 3.972 29 O -0.193 6.193 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.139 0.861 37 H 0.083 0.917 38 H 0.052 0.948 39 H 0.048 0.952 40 H 0.004 0.996 41 H 0.248 0.752 42 H 0.001 0.999 43 H 0.006 0.994 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.799 -7.852 -23.311 28.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.067 4.067 3 C -0.003 4.003 4 N -0.202 5.202 5 C -0.213 4.213 6 C 0.392 3.608 7 O -0.456 6.456 8 N -0.322 5.322 9 C -0.023 4.023 10 C -0.145 4.145 11 C -0.102 4.102 12 H 0.096 0.904 13 C 0.009 3.991 14 N -0.343 5.343 15 C -0.378 4.378 16 H 0.097 0.903 17 C -0.256 4.256 18 N -0.589 5.589 19 Si 0.801 3.199 20 H -0.187 1.187 21 H -0.220 1.220 22 H -0.218 1.218 23 C 0.059 3.941 24 C -0.108 4.108 25 H 0.105 0.895 26 C -0.151 4.151 27 C -0.006 4.006 28 C -0.047 4.047 29 O -0.079 6.079 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.101 0.899 36 H 0.156 0.844 37 H 0.101 0.899 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.022 0.978 41 H 0.057 0.943 42 H 0.019 0.981 43 H 0.025 0.975 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.091 0.909 47 H 0.095 0.905 48 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -14.520 -7.478 -22.784 28.033 hybrid contribution 1.063 0.742 0.879 1.566 sum -13.457 -6.736 -21.905 26.576 Atomic orbital electron populations 1.21783 0.92162 1.04258 1.02383 1.20427 0.97408 0.81757 1.07074 1.27316 0.97430 0.97809 0.77792 1.70614 1.17227 1.02590 1.29819 1.21546 1.11945 0.94300 0.93503 1.16959 0.77515 0.84883 0.81476 1.90784 1.48215 1.31235 1.75322 1.47876 1.54890 1.24872 1.04519 1.23162 0.94116 0.86678 0.98306 1.21471 0.99147 1.01172 0.92712 1.21714 0.98949 0.94012 0.95488 0.90384 1.21475 0.94850 0.94317 0.88498 1.44705 1.76351 1.02267 1.11001 1.19401 1.31408 0.95884 0.91060 0.90321 1.25686 0.99111 0.97827 1.02987 1.70231 1.41510 1.12887 1.34304 0.85107 0.76894 0.77830 0.80069 1.18749 1.21990 1.21761 1.20826 0.94635 0.85660 0.93008 1.22048 0.98054 0.96573 0.94153 0.89546 1.21299 0.98207 1.00783 0.94852 1.20318 0.98551 0.90784 0.90971 1.25686 0.96886 0.87027 0.95073 1.84435 1.63308 1.22221 1.37982 0.88832 0.92715 0.92325 0.86505 0.86437 0.89875 0.84425 0.89873 0.92932 0.93339 0.97820 0.94305 0.98059 0.97509 0.91732 0.92503 0.90852 0.90482 0.73108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 71.98 0.71 -0.15 16 2 C -0.03 -0.20 6.56 29.85 0.20 -0.01 16 3 C 0.21 3.12 7.56 88.39 0.67 3.79 16 4 N -0.47 -9.61 7.94 -293.03 -2.33 -11.94 16 5 C -0.09 -2.18 6.74 40.40 0.27 -1.91 16 6 C 0.60 17.29 7.74 86.66 0.67 17.97 16 7 O -0.57 -19.37 16.43 -4.08 -0.07 -19.44 16 8 N -0.59 -16.18 2.67 -828.38 -2.22 -18.40 16 9 C 0.10 2.30 5.94 85.81 0.51 2.81 16 10 C -0.11 -2.87 4.58 29.98 0.14 -2.73 16 11 C -0.08 -2.70 2.61 -10.48 -0.03 -2.73 16 12 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 13 C 0.13 5.62 6.71 86.45 0.58 6.20 16 14 N -0.62 -32.71 3.36 -696.84 -2.34 -35.06 16 15 C -0.25 -14.31 10.18 84.03 0.86 -13.46 16 16 H 0.08 4.35 7.90 -2.91 -0.02 4.32 16 17 C -0.06 -3.60 5.27 84.86 0.45 -3.16 16 18 N -0.94 -58.43 11.34 21.65 0.25 -58.18 16 19 Si 0.97 46.46 29.60 68.60 2.03 48.49 16 20 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 23 C 0.18 9.24 5.00 86.61 0.43 9.67 16 24 C -0.09 -3.24 3.14 -10.11 -0.03 -3.27 16 25 H 0.09 2.85 7.76 -2.39 -0.02 2.83 16 26 C -0.11 -3.78 4.51 29.47 0.13 -3.65 16 27 C 0.12 3.37 5.66 86.16 0.49 3.86 16 28 C 0.03 0.48 11.95 67.32 0.80 1.28 16 29 O -0.19 -3.01 10.73 0.38 0.00 -3.01 16 30 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 1.79 7.85 -2.38 -0.02 1.77 16 36 H 0.14 3.00 4.51 -2.39 -0.01 2.99 16 37 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.05 1.65 5.57 -2.39 -0.01 1.64 16 39 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.00 0.17 7.96 -2.39 -0.02 0.16 16 41 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 42 H 0.00 0.08 6.97 -2.39 -0.02 0.07 16 43 H 0.01 0.36 7.72 -2.38 -0.02 0.34 16 44 H 0.06 2.29 7.66 -2.39 -0.02 2.27 16 45 H 0.06 2.06 5.77 -2.39 -0.01 2.05 16 46 H 0.07 2.24 7.02 -2.39 -0.02 2.22 16 47 H 0.08 1.98 7.70 -2.39 -0.02 1.97 16 48 H 0.25 2.87 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -75.78 373.32 3.14 -72.64 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.97 Total: 10.38 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 6.85 Total: 14.51 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -6.64 Total: -123.57 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.06 Total: -22.44 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -75.78 3.14 -72.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946559107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.723 kcal (2) G-P(sol) polarization free energy of solvation -75.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds