Wall clock time and date at job start Tue Mar 31 2020 18:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47426 * 2 1 4 4 C 1.50700 * 109.46910 * 120.00198 * 2 1 3 5 5 C 1.38350 * 119.45836 * 274.97697 * 4 2 1 6 6 C 1.38362 * 119.30694 * 179.74205 * 5 4 2 7 7 C 1.40027 * 118.27970 * 0.54354 * 6 5 4 8 8 C 1.47842 * 120.55397 * 179.73503 * 7 6 5 9 9 O 1.21549 * 120.00302 * 359.71787 * 8 7 6 10 10 N 1.34778 * 119.99821 * 179.72564 * 8 7 6 11 11 C 1.46499 * 120.00055 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47147 * 179.97438 * 11 10 8 13 13 H 1.08998 * 110.91656 * 51.09144 * 12 11 10 14 14 C 1.54907 * 111.00297 * 287.19061 * 12 11 10 15 15 N 1.47425 * 104.83417 * 204.91471 * 14 12 11 16 16 C 1.36936 * 125.64845 * 204.16147 * 15 14 12 17 17 H 1.08001 * 120.00257 * 354.84348 * 16 15 14 18 18 C 1.38818 * 119.99456 * 174.83989 * 16 15 14 19 19 N 1.31612 * 120.00455 * 7.06440 * 18 16 15 20 20 Si 1.86808 * 119.99575 * 187.06549 * 18 16 15 21 21 H 1.48502 * 109.46882 * 94.99052 * 20 18 16 22 22 H 1.48496 * 109.47080 * 214.98479 * 20 18 16 23 23 H 1.48501 * 109.47260 * 334.98701 * 20 18 16 24 24 C 1.47022 * 108.69974 * 24.13446 * 15 14 12 25 25 C 1.54327 * 107.27291 * 358.93504 * 24 15 14 26 26 H 1.08993 * 110.71938 * 219.44661 * 25 24 15 27 27 O 1.42898 * 110.71868 * 96.35054 * 25 24 15 28 28 C 1.39521 * 118.88709 * 359.45803 * 7 6 5 29 29 N 1.31689 * 120.56224 * 0.27784 * 28 7 6 30 30 H 1.08998 * 109.47025 * 300.00053 * 1 2 3 31 31 H 1.09003 * 109.46763 * 59.99827 * 1 2 3 32 32 H 1.09001 * 109.47463 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47025 * 239.99947 * 2 1 3 34 34 H 1.08997 * 109.47707 * 179.97438 * 3 2 1 35 35 H 1.09006 * 109.46995 * 300.00282 * 3 2 1 36 36 H 1.09007 * 109.47132 * 59.99389 * 3 2 1 37 37 H 1.08007 * 120.35361 * 0.04706 * 5 4 2 38 38 H 1.07991 * 120.86387 * 180.29383 * 6 5 4 39 39 H 0.97005 * 120.00063 * 359.97438 * 10 8 7 40 40 H 1.08997 * 109.47267 * 59.99550 * 11 10 8 41 41 H 1.08997 * 109.46722 * 299.99439 * 11 10 8 42 42 H 1.09002 * 110.36864 * 86.07930 * 14 12 11 43 43 H 1.08997 * 110.36945 * 323.75821 * 14 12 11 44 44 H 0.97001 * 120.00264 * 179.97438 * 19 18 16 45 45 H 1.09007 * 109.87611 * 239.51983 * 24 15 14 46 46 H 1.08996 * 109.88514 * 118.35658 * 24 15 14 47 47 H 0.96701 * 114.00170 * 63.84012 * 27 25 24 48 48 H 1.07998 * 119.72062 * 180.25223 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.1605 -0.0094 2.4162 6 6 2.6169 -0.6660 3.5453 7 6 2.9439 -2.0232 3.4368 8 6 3.4418 -2.7725 4.6100 9 8 3.5752 -2.2095 5.6789 10 7 3.7480 -4.0800 4.4942 11 6 4.2409 -4.8226 5.6568 12 6 4.5101 -6.2749 5.2577 13 1 5.1343 -6.3239 4.3655 14 6 3.1842 -7.0488 5.0509 15 7 3.5318 -8.4623 5.2845 16 6 2.8552 -9.5434 4.7860 17 1 1.9390 -9.3990 4.2328 18 6 3.3471 -10.8251 4.9918 19 7 4.3836 -11.0135 5.7806 20 14 2.5378 -12.2826 4.1488 21 1 3.2609 -12.5896 2.8886 22 1 2.5862 -13.4637 5.0476 23 1 1.1231 -11.9530 3.8402 24 6 4.7255 -8.5188 6.1409 25 6 5.1517 -7.0639 6.4295 26 1 6.2373 -6.9689 6.4096 27 8 4.6305 -6.6240 7.6852 28 6 2.7864 -2.6580 2.2043 29 7 2.3429 -1.9906 1.1592 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.9024 1.0385 2.4614 38 1 2.7220 -0.1444 4.4851 39 1 3.6413 -4.5294 3.6412 40 1 3.4923 -4.7966 6.4486 41 1 5.1641 -4.3667 6.0144 42 1 2.8194 -6.9111 4.0329 43 1 2.4356 -6.7181 5.7709 44 1 4.7271 -11.9091 5.9247 45 1 5.5281 -9.0446 5.6236 46 1 4.4879 -9.0277 7.0750 47 1 4.9717 -7.1137 8.4460 48 1 3.0307 -3.7054 2.1064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958145979.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:47 Heat of formation + Delta-G solvation = -32.380637 kcal Electronic energy + Delta-G solvation = -28136.131093 eV Core-core repulsion = 24191.417802 eV Total energy + Delta-G solvation = -3944.713291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.95884 -39.39938 -38.25377 -35.90503 -35.02641 -34.63239 -32.79601 -32.27226 -30.92770 -29.45648 -27.75722 -27.61322 -25.81273 -24.87742 -23.84110 -23.19944 -21.50031 -20.56089 -20.17636 -19.79796 -18.11581 -17.37541 -16.98630 -16.50531 -16.17703 -15.51013 -15.32546 -15.14764 -14.86853 -14.69292 -14.24885 -14.07672 -14.00314 -13.73654 -13.41643 -13.33861 -13.12922 -13.01205 -12.71712 -12.60133 -12.46150 -11.92537 -11.67046 -11.58399 -11.42904 -11.36166 -11.25130 -10.84808 -10.67799 -10.51519 -10.35614 -10.17600 -10.06858 -9.98017 -9.83790 -9.59969 -9.34718 -9.21194 -8.94077 -8.66263 -6.89424 -5.78578 -3.10485 0.38720 0.94016 2.74181 3.10723 3.37097 3.42692 3.44520 3.60212 3.74476 4.25443 4.43929 4.50977 4.55926 4.65280 4.68600 4.71824 4.77277 4.83493 5.06783 5.14284 5.22503 5.27505 5.31436 5.37620 5.39926 5.46670 5.50893 5.54279 5.56916 5.70828 5.80695 5.83669 5.87594 5.90849 6.02697 6.07034 6.25891 6.33561 6.36004 6.42562 6.57735 6.85571 7.35731 7.44609 7.46201 7.59702 7.71736 8.14222 8.17556 8.21439 9.15172 9.76040 10.41815 11.33915 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.002382 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.760953 B =11752.605487 C =13351.458263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 C -0.149 4.149 4 C 0.155 3.845 5 C -0.179 4.179 6 C -0.015 4.015 7 C -0.189 4.189 8 C 0.561 3.439 9 O -0.538 6.538 10 N -0.719 5.719 11 C 0.141 3.859 12 C -0.110 4.110 13 H 0.090 0.910 14 C 0.144 3.856 15 N -0.603 5.603 16 C -0.228 4.228 17 H 0.079 0.921 18 C -0.008 4.008 19 N -0.923 5.923 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.152 3.848 25 C 0.083 3.917 26 H 0.057 0.943 27 O -0.565 6.565 28 C 0.140 3.860 29 N -0.485 5.485 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.399 0.601 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.037 0.963 43 H 0.025 0.975 44 H 0.253 0.747 45 H 0.054 0.946 46 H 0.048 0.952 47 H 0.376 0.624 48 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.680 22.989 -8.491 24.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.069 4.069 3 C -0.206 4.206 4 C 0.017 3.983 5 C -0.199 4.199 6 C -0.042 4.042 7 C -0.194 4.194 8 C 0.346 3.654 9 O -0.416 6.416 10 N -0.370 5.370 11 C 0.018 3.982 12 C -0.130 4.130 13 H 0.108 0.892 14 C 0.018 3.982 15 N -0.329 5.329 16 C -0.356 4.356 17 H 0.097 0.903 18 C -0.204 4.204 19 N -0.571 5.571 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.206 1.206 24 C 0.027 3.973 25 C 0.023 3.977 26 H 0.075 0.925 27 O -0.370 6.370 28 C -0.019 4.019 29 N -0.193 5.193 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.160 0.840 38 H 0.165 0.835 39 H 0.235 0.765 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.056 0.944 43 H 0.043 0.957 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.066 0.934 47 H 0.223 0.777 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.977 23.097 -8.877 24.823 hybrid contribution 0.043 -1.252 0.390 1.312 sum -1.934 21.845 -8.487 23.515 Atomic orbital electron populations 1.21810 0.93272 1.02624 1.02269 1.20121 0.96436 0.95471 0.94910 1.21942 1.01465 0.94712 1.02495 1.21477 0.92188 0.89782 0.94816 1.21989 1.02915 1.01947 0.93005 1.21738 0.90649 0.92622 0.99154 1.21061 1.06529 0.96123 0.95706 1.17993 0.77818 0.81954 0.87590 1.90776 1.53593 1.68809 1.28420 1.46055 1.66541 1.09730 1.14704 1.21229 0.99968 0.89828 0.87166 1.22691 0.99857 0.92590 0.97823 0.89203 1.21602 0.93127 0.85606 0.97878 1.44381 1.31130 0.99619 1.57799 1.19079 1.04235 0.84184 1.28085 0.90332 1.24815 0.98237 0.97436 0.99938 1.69939 1.26742 1.20752 1.39628 0.86096 0.78542 0.82259 0.78886 1.21578 1.21764 1.20599 1.21883 0.90266 0.89399 0.95788 1.23114 0.95224 0.96191 0.83162 0.92507 1.86392 1.72232 1.62599 1.15810 1.23013 0.91953 0.99794 0.87100 1.67520 1.11783 1.08508 1.31482 0.92398 0.91672 0.92076 0.88921 0.92240 0.91629 0.92029 0.83981 0.83480 0.76539 0.90121 0.91486 0.94435 0.95682 0.93716 0.92767 0.93394 0.77691 0.82189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.18 37.16 0.34 -0.55 16 2 C -0.05 -0.35 3.23 -91.77 -0.30 -0.65 16 3 C -0.15 -0.76 8.61 37.16 0.32 -0.44 16 4 C 0.15 1.46 5.79 -82.51 -0.48 0.99 16 5 C -0.18 -1.54 9.16 -39.49 -0.36 -1.90 16 6 C -0.02 -0.16 9.72 -38.87 -0.38 -0.54 16 7 C -0.19 -2.22 5.89 -104.82 -0.62 -2.84 16 8 C 0.56 7.91 7.78 -12.33 -0.10 7.82 16 9 O -0.54 -9.37 16.42 5.32 0.09 -9.28 16 10 N -0.72 -9.45 5.46 -61.25 -0.33 -9.78 16 11 C 0.14 2.15 4.61 -4.04 -0.02 2.13 16 12 C -0.11 -1.82 2.98 -88.47 -0.26 -2.09 16 13 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 14 C 0.14 2.90 6.64 -2.53 -0.02 2.88 16 15 N -0.60 -15.04 3.39 -170.07 -0.58 -15.62 16 16 C -0.23 -6.26 10.27 -15.06 -0.15 -6.41 16 17 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 18 C -0.01 -0.23 5.48 -17.43 -0.10 -0.32 16 19 N -0.92 -26.55 10.36 55.49 0.57 -25.98 16 20 Si 0.91 21.86 29.56 -169.99 -5.02 16.83 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 24 C 0.15 3.52 5.15 -3.06 -0.02 3.50 16 25 C 0.08 1.49 4.08 -24.89 -0.10 1.39 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 O -0.56 -9.72 12.26 -35.23 -0.43 -10.15 16 28 C 0.14 1.52 10.71 -17.13 -0.18 1.34 16 29 N -0.48 -5.46 10.25 -9.14 -0.09 -5.55 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.06 0.27 6.48 -51.92 -0.34 -0.07 16 37 H 0.14 0.84 6.29 -52.48 -0.33 0.51 16 38 H 0.15 1.44 7.74 -52.49 -0.41 1.04 16 39 H 0.40 4.38 6.54 -40.82 -0.27 4.11 16 40 H 0.08 1.41 7.55 -51.93 -0.39 1.02 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.03 0.54 7.90 -51.93 -0.41 0.13 16 44 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.05 1.38 7.30 -51.92 -0.38 1.00 16 46 H 0.05 1.23 7.54 -51.93 -0.39 0.84 16 47 H 0.38 5.14 9.12 45.56 0.42 5.55 16 48 H 0.16 1.43 6.42 -52.49 -0.34 1.09 16 LS Contribution 388.73 15.07 5.86 5.86 Total: -1.00 -33.89 388.73 -8.97 -42.85 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.61 Total: 6.51 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -2.42 Total: 4.32 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.43 Total: -56.93 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.34 Total: -19.44 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.89 -8.97 -42.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958145979.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.473 kcal (2) G-P(sol) polarization free energy of solvation -33.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds