Wall clock time and date at job start Tue Mar 31 2020 18:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47426 * 2 1 4 4 C 1.50700 * 109.46910 * 120.00198 * 2 1 3 5 5 C 1.38350 * 119.45836 * 274.97697 * 4 2 1 6 6 C 1.38362 * 119.30694 * 179.74205 * 5 4 2 7 7 C 1.40027 * 118.27970 * 0.54354 * 6 5 4 8 8 C 1.47842 * 120.55397 * 179.73503 * 7 6 5 9 9 O 1.21549 * 120.00302 * 359.71787 * 8 7 6 10 10 N 1.34778 * 119.99821 * 179.72564 * 8 7 6 11 11 C 1.46499 * 120.00055 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47147 * 179.97438 * 11 10 8 13 13 H 1.08998 * 110.91656 * 51.09144 * 12 11 10 14 14 C 1.54907 * 111.00297 * 287.19061 * 12 11 10 15 15 N 1.47425 * 104.83417 * 204.91471 * 14 12 11 16 16 C 1.36936 * 125.64845 * 204.16147 * 15 14 12 17 17 H 1.08001 * 120.00257 * 354.84348 * 16 15 14 18 18 C 1.38818 * 119.99456 * 174.83989 * 16 15 14 19 19 N 1.31612 * 120.00455 * 7.06440 * 18 16 15 20 20 Si 1.86808 * 119.99575 * 187.06549 * 18 16 15 21 21 H 1.48502 * 109.46882 * 94.99052 * 20 18 16 22 22 H 1.48496 * 109.47080 * 214.98479 * 20 18 16 23 23 H 1.48501 * 109.47260 * 334.98701 * 20 18 16 24 24 C 1.47022 * 108.69974 * 24.13446 * 15 14 12 25 25 C 1.54327 * 107.27291 * 358.93504 * 24 15 14 26 26 H 1.08993 * 110.71938 * 219.44661 * 25 24 15 27 27 O 1.42898 * 110.71868 * 96.35054 * 25 24 15 28 28 C 1.39521 * 118.88709 * 359.45803 * 7 6 5 29 29 N 1.31689 * 120.56224 * 0.27784 * 28 7 6 30 30 H 1.08998 * 109.47025 * 300.00053 * 1 2 3 31 31 H 1.09003 * 109.46763 * 59.99827 * 1 2 3 32 32 H 1.09001 * 109.47463 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47025 * 239.99947 * 2 1 3 34 34 H 1.08997 * 109.47707 * 179.97438 * 3 2 1 35 35 H 1.09006 * 109.46995 * 300.00282 * 3 2 1 36 36 H 1.09007 * 109.47132 * 59.99389 * 3 2 1 37 37 H 1.08007 * 120.35361 * 0.04706 * 5 4 2 38 38 H 1.07991 * 120.86387 * 180.29383 * 6 5 4 39 39 H 0.97005 * 120.00063 * 359.97438 * 10 8 7 40 40 H 1.08997 * 109.47267 * 59.99550 * 11 10 8 41 41 H 1.08997 * 109.46722 * 299.99439 * 11 10 8 42 42 H 1.09002 * 110.36864 * 86.07930 * 14 12 11 43 43 H 1.08997 * 110.36945 * 323.75821 * 14 12 11 44 44 H 0.97001 * 120.00264 * 179.97438 * 19 18 16 45 45 H 1.09007 * 109.87611 * 239.51983 * 24 15 14 46 46 H 1.08996 * 109.88514 * 118.35658 * 24 15 14 47 47 H 0.96701 * 114.00170 * 63.84012 * 27 25 24 48 48 H 1.07998 * 119.72062 * 180.25223 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.1605 -0.0094 2.4162 6 6 2.6169 -0.6660 3.5453 7 6 2.9439 -2.0232 3.4368 8 6 3.4418 -2.7725 4.6100 9 8 3.5752 -2.2095 5.6789 10 7 3.7480 -4.0800 4.4942 11 6 4.2409 -4.8226 5.6568 12 6 4.5101 -6.2749 5.2577 13 1 5.1343 -6.3239 4.3655 14 6 3.1842 -7.0488 5.0509 15 7 3.5318 -8.4623 5.2845 16 6 2.8552 -9.5434 4.7860 17 1 1.9390 -9.3990 4.2328 18 6 3.3471 -10.8251 4.9918 19 7 4.3836 -11.0135 5.7806 20 14 2.5378 -12.2826 4.1488 21 1 3.2609 -12.5896 2.8886 22 1 2.5862 -13.4637 5.0476 23 1 1.1231 -11.9530 3.8402 24 6 4.7255 -8.5188 6.1409 25 6 5.1517 -7.0639 6.4295 26 1 6.2373 -6.9689 6.4096 27 8 4.6305 -6.6240 7.6852 28 6 2.7864 -2.6580 2.2043 29 7 2.3429 -1.9906 1.1592 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.9024 1.0385 2.4614 38 1 2.7220 -0.1444 4.4851 39 1 3.6413 -4.5294 3.6412 40 1 3.4923 -4.7966 6.4486 41 1 5.1641 -4.3667 6.0144 42 1 2.8194 -6.9111 4.0329 43 1 2.4356 -6.7181 5.7709 44 1 4.7271 -11.9091 5.9247 45 1 5.5281 -9.0446 5.6236 46 1 4.4879 -9.0277 7.0750 47 1 4.9717 -7.1137 8.4460 48 1 3.0307 -3.7054 2.1064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958145979.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:46 Heat of formation + Delta-G solvation = -57.084290 kcal Electronic energy + Delta-G solvation = -28137.202323 eV Core-core repulsion = 24191.417802 eV Total energy + Delta-G solvation = -3945.784522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.81376 -40.53510 -39.70806 -36.52358 -36.41856 -36.16769 -34.00110 -33.59949 -32.06572 -30.85667 -29.40599 -28.04354 -27.34200 -26.07615 -24.96410 -24.25360 -22.52348 -22.00112 -21.39243 -21.01796 -19.25833 -19.01027 -18.13151 -17.75346 -17.01336 -16.81441 -16.55807 -16.44574 -15.97772 -15.81767 -15.42815 -15.38012 -15.05858 -14.86257 -14.63773 -14.38989 -14.33306 -14.08057 -13.81818 -13.67634 -13.49848 -13.16442 -13.05741 -12.87047 -12.69811 -12.35406 -12.22084 -12.10583 -12.07091 -11.93963 -11.87352 -11.79529 -11.63005 -11.22566 -10.97914 -10.77733 -10.72379 -10.46932 -10.27531 -9.97097 -8.91713 -7.88310 -5.22130 -0.44146 0.17396 1.46099 1.47083 1.56056 1.74715 2.02663 2.47988 2.76066 3.05588 3.24698 3.35661 3.54254 3.61365 3.65775 3.78663 3.88984 3.91085 3.98837 3.99361 4.13318 4.17332 4.28018 4.42127 4.53118 4.57281 4.62800 4.66577 4.82951 4.83324 4.87755 4.91825 4.94346 4.98693 5.00193 5.06967 5.22718 5.25946 5.37007 5.37566 5.42716 5.42912 5.51494 5.54904 5.68912 6.16713 6.40810 6.82606 6.92212 7.07560 7.08393 7.74787 8.39446 9.22464 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.002382 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.760953 B =11752.605487 C =13351.458263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.050 4.050 3 C -0.146 4.146 4 C 0.151 3.849 5 C -0.170 4.170 6 C -0.022 4.022 7 C -0.204 4.204 8 C 0.563 3.437 9 O -0.576 6.576 10 N -0.711 5.711 11 C 0.157 3.843 12 C -0.093 4.093 13 H 0.110 0.890 14 C 0.141 3.859 15 N -0.625 5.625 16 C -0.242 4.242 17 H 0.081 0.919 18 C -0.064 4.064 19 N -0.949 5.949 20 Si 0.977 3.023 21 H -0.285 1.285 22 H -0.296 1.296 23 H -0.270 1.270 24 C 0.158 3.842 25 C 0.096 3.904 26 H 0.088 0.912 27 O -0.571 6.571 28 C 0.139 3.861 29 N -0.506 5.506 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.173 0.827 38 H 0.150 0.850 39 H 0.411 0.589 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.012 0.988 44 H 0.247 0.753 45 H 0.026 0.974 46 H 0.012 0.988 47 H 0.391 0.609 48 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.075 25.031 -10.114 27.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.069 4.069 3 C -0.203 4.203 4 C 0.014 3.986 5 C -0.189 4.189 6 C -0.048 4.048 7 C -0.210 4.210 8 C 0.351 3.649 9 O -0.457 6.457 10 N -0.363 5.363 11 C 0.033 3.967 12 C -0.112 4.112 13 H 0.128 0.872 14 C 0.016 3.984 15 N -0.351 5.351 16 C -0.371 4.371 17 H 0.099 0.901 18 C -0.257 4.257 19 N -0.598 5.598 20 Si 0.805 3.195 21 H -0.211 1.211 22 H -0.223 1.223 23 H -0.195 1.195 24 C 0.033 3.967 25 C 0.036 3.964 26 H 0.105 0.895 27 O -0.379 6.379 28 C -0.020 4.020 29 N -0.215 5.215 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.190 0.810 38 H 0.168 0.832 39 H 0.249 0.751 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.029 0.971 44 H 0.057 0.943 45 H 0.044 0.956 46 H 0.030 0.970 47 H 0.241 0.759 48 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.384 25.157 -10.523 27.373 hybrid contribution 0.099 -1.832 0.882 2.036 sum -2.285 23.324 -9.641 25.342 Atomic orbital electron populations 1.21801 0.92605 1.01892 1.03423 1.20212 0.96868 0.96387 0.93442 1.21939 1.01204 0.93360 1.03797 1.22006 0.91129 0.89430 0.96076 1.22262 1.01623 1.03195 0.91867 1.21915 0.90594 0.92288 0.99986 1.20911 1.08261 0.96706 0.95085 1.18307 0.76970 0.81917 0.87734 1.90753 1.55357 1.69565 1.29979 1.45915 1.66134 1.09560 1.14656 1.20907 0.99554 0.89033 0.87216 1.22582 0.97882 0.92646 0.98105 0.87164 1.21714 0.94748 0.83716 0.98197 1.44703 1.31383 1.01027 1.57974 1.19444 1.04564 0.85358 1.27733 0.90093 1.25628 0.99225 1.00021 1.00849 1.70145 1.28085 1.20759 1.40848 0.85085 0.78132 0.78688 0.77591 1.21147 1.22295 1.19464 1.21713 0.88985 0.92533 0.93475 1.22961 0.96878 0.92700 0.83903 0.89480 1.86373 1.72722 1.62616 1.16173 1.23205 0.91611 1.00469 0.86702 1.67582 1.12626 1.09597 1.31665 0.91821 0.89976 0.93735 0.89577 0.92648 0.90227 0.90890 0.80995 0.83217 0.75140 0.92391 0.90875 0.92947 0.97059 0.94324 0.95616 0.96971 0.75948 0.80859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.18 71.98 0.66 -0.79 16 2 C -0.05 -0.60 3.23 -11.54 -0.04 -0.63 16 3 C -0.15 -1.06 8.61 71.98 0.62 -0.44 16 4 C 0.15 2.58 5.79 42.57 0.25 2.83 16 5 C -0.17 -2.56 9.16 22.33 0.20 -2.36 16 6 C -0.02 -0.42 9.72 22.73 0.22 -0.20 16 7 C -0.20 -4.62 5.89 -19.99 -0.12 -4.74 16 8 C 0.56 15.50 7.78 86.79 0.68 16.18 16 9 O -0.58 -19.92 16.42 -3.87 -0.06 -19.98 16 10 N -0.71 -17.79 5.46 -465.98 -2.54 -20.33 16 11 C 0.16 4.57 4.61 86.38 0.40 4.97 16 12 C -0.09 -2.94 2.98 -9.40 -0.03 -2.96 16 13 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 14 C 0.14 5.61 6.64 86.85 0.58 6.19 16 15 N -0.62 -31.48 3.39 -691.97 -2.35 -33.83 16 16 C -0.24 -13.43 10.27 84.04 0.86 -12.57 16 17 H 0.08 4.32 7.84 -2.91 -0.02 4.30 16 18 C -0.06 -3.61 5.48 84.86 0.46 -3.14 16 19 N -0.95 -56.06 10.36 21.65 0.22 -55.84 16 20 Si 0.98 45.34 29.56 68.60 2.03 47.37 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 22 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 C 0.16 7.49 5.15 86.73 0.45 7.94 16 25 C 0.10 3.33 4.08 31.78 0.13 3.46 16 26 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 27 O -0.57 -19.21 12.26 -148.98 -1.83 -21.04 16 28 C 0.14 2.86 10.71 85.02 0.91 3.77 16 29 N -0.51 -10.78 10.25 -182.83 -1.87 -12.65 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.08 0.39 8.14 -2.38 -0.02 0.37 16 36 H 0.07 0.37 6.48 -2.38 -0.02 0.36 16 37 H 0.17 1.46 6.29 -2.91 -0.02 1.44 16 38 H 0.15 2.79 7.74 -2.92 -0.02 2.77 16 39 H 0.41 8.32 6.54 -92.70 -0.61 7.71 16 40 H 0.06 2.00 7.55 -2.39 -0.02 1.98 16 41 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.01 0.49 7.90 -2.39 -0.02 0.47 16 44 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 45 H 0.03 1.35 7.30 -2.38 -0.02 1.33 16 46 H 0.01 0.65 7.54 -2.39 -0.02 0.63 16 47 H 0.39 10.44 9.12 -74.06 -0.68 9.76 16 48 H 0.17 2.86 6.42 -2.91 -0.02 2.84 16 Total: -1.00 -74.64 388.73 -0.47 -75.10 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: -0.30 Total: 23.70 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 6.23 Total: 17.50 kcal Atomic # 7 Polarization: -116.11 SS G_CDS: -6.54 Total: -122.65 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -1.89 Total: -41.02 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -74.64 -0.47 -75.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958145979.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.020 kcal (2) G-P(sol) polarization free energy of solvation -74.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds