Wall clock time and date at job start Tue Mar 31 2020 18:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47128 * 2 1 4 4 C 1.50702 * 109.46965 * 119.99619 * 2 1 3 5 5 C 1.38355 * 119.46176 * 275.00222 * 4 2 1 6 6 C 1.38354 * 119.30303 * 179.97438 * 5 4 2 7 7 C 1.40018 * 118.29036 * 0.02562 * 6 5 4 8 8 C 1.47837 * 120.56136 * 180.02562 * 7 6 5 9 9 O 1.21552 * 120.00066 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00307 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00209 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47452 * 179.97438 * 11 10 8 13 13 H 1.09000 * 110.88654 * 51.11293 * 12 11 10 14 14 C 1.54917 * 111.00192 * 287.19329 * 12 11 10 15 15 N 1.47423 * 104.83292 * 204.91340 * 14 12 11 16 16 C 1.36931 * 125.65065 * 204.15050 * 15 14 12 17 17 H 1.07999 * 120.00036 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00391 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99972 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00317 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47108 * 0.02562 * 20 18 16 22 22 H 1.48510 * 109.46997 * 120.00234 * 20 18 16 23 23 H 1.48500 * 109.47746 * 240.00082 * 20 18 16 24 24 C 1.47025 * 108.70403 * 24.12589 * 15 14 12 25 25 C 1.54328 * 107.26724 * 358.94406 * 24 15 14 26 26 H 1.08994 * 110.87213 * 96.24249 * 25 24 15 27 27 O 1.42903 * 110.71576 * 219.43721 * 25 24 15 28 28 C 1.39526 * 118.88271 * 359.97438 * 7 6 5 29 29 N 1.31695 * 120.56541 * 0.28068 * 28 7 6 30 30 H 1.08998 * 109.47286 * 300.00037 * 1 2 3 31 31 H 1.09001 * 109.46770 * 60.00550 * 1 2 3 32 32 H 1.08994 * 109.46866 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47554 * 239.99671 * 2 1 3 34 34 H 1.08997 * 109.47483 * 179.97438 * 3 2 1 35 35 H 1.09006 * 109.47233 * 299.99687 * 3 2 1 36 36 H 1.09004 * 109.47423 * 59.99602 * 3 2 1 37 37 H 1.08004 * 120.34526 * 0.02562 * 5 4 2 38 38 H 1.08004 * 120.85619 * 180.02562 * 6 5 4 39 39 H 0.96996 * 120.00073 * 359.97438 * 10 8 7 40 40 H 1.09005 * 109.46828 * 299.99384 * 11 10 8 41 41 H 1.09002 * 109.47644 * 59.99325 * 11 10 8 42 42 H 1.08993 * 110.36479 * 323.75179 * 14 12 11 43 43 H 1.08999 * 110.36484 * 86.07478 * 14 12 11 44 44 H 0.96997 * 120.00062 * 179.97438 * 19 18 16 45 45 H 1.08996 * 109.88873 * 239.52721 * 24 15 14 46 46 H 1.09004 * 110.00915 * 118.42834 * 24 15 14 47 47 H 0.96698 * 114.00596 * 293.52388 * 27 25 24 48 48 H 1.08002 * 119.71532 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.1601 -0.0093 2.4165 6 6 2.6211 -0.6648 3.5443 7 6 2.9426 -2.0233 3.4373 8 6 3.4390 -2.7730 4.6108 9 8 3.5715 -2.2101 5.6800 10 7 3.7447 -4.0805 4.4953 11 6 4.2361 -4.8235 5.6584 12 6 4.5050 -6.2759 5.2595 13 1 5.1304 -6.3246 4.3681 14 6 3.1788 -7.0491 5.0513 15 7 3.5255 -8.4628 5.2852 16 6 2.8489 -9.5436 4.7862 17 1 1.9796 -9.3956 4.1626 18 6 3.2801 -10.8295 5.0818 19 7 4.3392 -11.0099 5.8422 20 14 2.3566 -12.3039 4.4016 21 1 1.2102 -11.8350 3.5822 22 1 3.2705 -13.1134 3.5561 23 1 1.8552 -13.1354 5.5251 24 6 4.7185 -8.5200 6.1426 25 6 5.1450 -7.0653 6.4318 26 1 4.7464 -6.7265 7.3880 27 8 6.5685 -6.9415 6.4072 28 6 2.7857 -2.6580 2.2047 29 7 2.3478 -1.9893 1.1581 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6766 1.9564 0.8900 37 1 1.9019 1.0385 2.4615 38 1 2.7300 -0.1421 4.4831 39 1 3.6387 -4.5298 3.6422 40 1 5.1592 -4.3680 6.0169 41 1 3.4868 -4.7972 6.4495 42 1 2.4299 -6.7182 5.7706 43 1 2.8152 -6.9112 4.0330 44 1 4.6403 -11.9085 6.0490 45 1 5.5214 -9.0460 5.6262 46 1 4.4823 -9.0297 7.0768 47 1 7.0171 -7.4169 7.1198 48 1 3.0301 -3.7055 2.1069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958145980.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:50 Heat of formation + Delta-G solvation = -34.018415 kcal Electronic energy + Delta-G solvation = -28038.676059 eV Core-core repulsion = 24093.891749 eV Total energy + Delta-G solvation = -3944.784310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.98003 -39.43074 -38.20897 -35.91770 -35.23112 -34.73698 -32.81387 -32.36602 -30.95042 -29.48372 -27.63805 -27.59425 -25.85358 -24.89286 -23.84106 -23.19130 -21.52451 -20.58443 -20.27082 -19.90543 -18.17468 -17.17305 -16.90640 -16.65519 -16.28544 -15.62878 -15.43763 -15.29543 -14.89232 -14.72496 -14.31889 -14.21248 -13.99497 -13.69614 -13.38933 -13.25642 -13.17899 -12.93008 -12.68381 -12.48947 -12.45204 -12.06405 -11.67891 -11.59374 -11.49416 -11.36902 -11.26173 -11.00143 -10.85647 -10.61859 -10.37680 -10.19277 -10.05030 -9.89106 -9.85461 -9.63001 -9.37087 -9.24384 -9.01076 -8.69010 -6.93289 -5.78593 -3.13191 0.36760 0.92625 2.70760 3.04996 3.36140 3.41751 3.44199 3.57940 3.73243 4.24311 4.40961 4.49344 4.53666 4.64553 4.67620 4.71720 4.76378 4.82144 4.98522 5.13177 5.15022 5.21582 5.29210 5.38304 5.41111 5.45875 5.47571 5.53669 5.64046 5.69464 5.78291 5.82804 5.82978 5.89799 5.98680 6.00068 6.17583 6.23837 6.29676 6.37165 6.50581 6.78026 7.36134 7.41256 7.46893 7.58364 7.72227 8.09547 8.15723 8.17029 9.13014 9.73527 10.37442 11.33091 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014570 B = 0.002353 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.269176 B =11895.020265 C =13412.807732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 C -0.149 4.149 4 C 0.155 3.845 5 C -0.179 4.179 6 C -0.015 4.015 7 C -0.190 4.190 8 C 0.562 3.438 9 O -0.539 6.539 10 N -0.716 5.716 11 C 0.133 3.867 12 C -0.109 4.109 13 H 0.090 0.910 14 C 0.141 3.859 15 N -0.602 5.602 16 C -0.230 4.230 17 H 0.080 0.920 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.914 3.086 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.152 3.848 25 C 0.083 3.917 26 H 0.057 0.943 27 O -0.567 6.567 28 C 0.141 3.859 29 N -0.484 5.484 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.401 0.599 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.024 0.976 43 H 0.043 0.957 44 H 0.253 0.747 45 H 0.058 0.942 46 H 0.046 0.954 47 H 0.376 0.624 48 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.115 23.187 -7.778 24.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.070 4.070 3 C -0.206 4.206 4 C 0.018 3.982 5 C -0.199 4.199 6 C -0.041 4.041 7 C -0.195 4.195 8 C 0.348 3.652 9 O -0.417 6.417 10 N -0.368 5.368 11 C 0.010 3.990 12 C -0.128 4.128 13 H 0.109 0.891 14 C 0.014 3.986 15 N -0.330 5.330 16 C -0.358 4.358 17 H 0.098 0.902 18 C -0.205 4.205 19 N -0.570 5.570 20 Si 0.744 3.256 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.027 3.973 25 C 0.023 3.977 26 H 0.075 0.925 27 O -0.372 6.372 28 C -0.018 4.018 29 N -0.193 5.193 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.160 0.840 38 H 0.165 0.835 39 H 0.237 0.763 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.041 0.959 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.223 0.777 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.220 23.251 -8.303 24.898 hybrid contribution -0.241 -1.162 0.665 1.360 sum -3.460 22.089 -7.638 23.627 Atomic orbital electron populations 1.21808 0.93262 1.02622 1.02276 1.20124 0.96440 0.95482 0.94911 1.21943 1.01479 0.94701 1.02498 1.21488 0.92099 0.89796 0.94815 1.21988 1.02887 1.01961 0.93025 1.21731 0.90635 0.92602 0.99155 1.21031 1.06667 0.96099 0.95679 1.17999 0.77705 0.81885 0.87634 1.90772 1.53692 1.68817 1.28456 1.45961 1.66513 1.09683 1.14594 1.21434 0.99562 0.90616 0.87397 1.22624 0.98785 0.91845 0.99587 0.89143 1.21633 0.92755 0.85699 0.98463 1.44313 1.30994 0.99572 1.58075 1.19111 1.07687 0.83791 1.25187 0.90178 1.24827 0.98104 0.97471 1.00055 1.69951 1.25573 1.20491 1.40956 0.86016 0.78772 0.82683 0.78106 1.20436 1.21684 1.21708 1.21821 0.90421 0.89515 0.95582 1.23119 0.80287 0.98003 0.96301 0.92507 1.86418 1.18991 1.75929 1.55824 1.23023 0.91903 0.99815 0.87058 1.67531 1.11781 1.08507 1.31452 0.92398 0.91660 0.92078 0.88900 0.92232 0.91617 0.92032 0.83961 0.83477 0.76343 0.90920 0.91084 0.95853 0.93889 0.93709 0.92385 0.93625 0.77678 0.82172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.18 37.16 0.34 -0.53 16 2 C -0.05 -0.35 3.23 -91.77 -0.30 -0.65 16 3 C -0.15 -0.75 8.61 37.16 0.32 -0.43 16 4 C 0.16 1.46 5.79 -82.51 -0.48 0.98 16 5 C -0.18 -1.52 9.16 -39.50 -0.36 -1.88 16 6 C -0.01 -0.15 9.72 -38.87 -0.38 -0.53 16 7 C -0.19 -2.19 5.89 -104.82 -0.62 -2.81 16 8 C 0.56 7.74 7.78 -12.33 -0.10 7.65 16 9 O -0.54 -9.11 16.42 5.32 0.09 -9.03 16 10 N -0.72 -9.23 5.46 -61.25 -0.33 -9.57 16 11 C 0.13 1.95 5.13 -4.04 -0.02 1.93 16 12 C -0.11 -1.83 2.77 -88.47 -0.25 -2.07 16 13 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 14 C 0.14 2.74 6.65 -2.53 -0.02 2.72 16 15 N -0.60 -14.92 3.39 -170.07 -0.58 -15.49 16 16 C -0.23 -6.26 10.28 -15.06 -0.15 -6.42 16 17 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 18 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 19 N -0.92 -26.61 10.31 55.49 0.57 -26.04 16 20 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 24 C 0.15 3.57 5.15 -3.06 -0.02 3.55 16 25 C 0.08 1.52 3.80 -24.90 -0.09 1.42 16 26 H 0.06 0.97 8.04 -51.93 -0.42 0.55 16 27 O -0.57 -9.68 13.39 -35.23 -0.47 -10.15 16 28 C 0.14 1.52 10.71 -17.13 -0.18 1.34 16 29 N -0.48 -5.42 10.25 -9.13 -0.09 -5.52 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.06 0.26 6.48 -51.93 -0.34 -0.08 16 37 H 0.14 0.82 6.29 -52.48 -0.33 0.49 16 38 H 0.15 1.41 7.74 -52.48 -0.41 1.00 16 39 H 0.40 4.38 6.54 -40.82 -0.27 4.12 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.07 1.08 7.96 -51.93 -0.41 0.66 16 42 H 0.02 0.46 7.90 -51.93 -0.41 0.05 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.06 1.54 7.29 -51.93 -0.38 1.16 16 46 H 0.05 1.17 7.51 -51.93 -0.39 0.78 16 47 H 0.38 4.98 9.12 45.56 0.42 5.39 16 48 H 0.16 1.42 6.42 -52.49 -0.34 1.09 16 LS Contribution 390.14 15.07 5.88 5.88 Total: -1.00 -33.74 390.14 -8.98 -42.71 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.62 Total: 6.48 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -2.39 Total: 3.94 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.43 Total: -56.62 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.38 Total: -19.18 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.74 -8.98 -42.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958145980.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.693 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds