Wall clock time and date at job start Tue Mar 31 2020 18:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47128 * 2 1 4 4 C 1.50702 * 109.46965 * 119.99619 * 2 1 3 5 5 C 1.38355 * 119.46176 * 275.00222 * 4 2 1 6 6 C 1.38354 * 119.30303 * 179.97438 * 5 4 2 7 7 C 1.40018 * 118.29036 * 0.02562 * 6 5 4 8 8 C 1.47837 * 120.56136 * 180.02562 * 7 6 5 9 9 O 1.21552 * 120.00066 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00307 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00209 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47452 * 179.97438 * 11 10 8 13 13 H 1.09000 * 110.88654 * 51.11293 * 12 11 10 14 14 C 1.54917 * 111.00192 * 287.19329 * 12 11 10 15 15 N 1.47423 * 104.83292 * 204.91340 * 14 12 11 16 16 C 1.36931 * 125.65065 * 204.15050 * 15 14 12 17 17 H 1.07999 * 120.00036 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00391 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99972 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00317 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47108 * 0.02562 * 20 18 16 22 22 H 1.48510 * 109.46997 * 120.00234 * 20 18 16 23 23 H 1.48500 * 109.47746 * 240.00082 * 20 18 16 24 24 C 1.47025 * 108.70403 * 24.12589 * 15 14 12 25 25 C 1.54328 * 107.26724 * 358.94406 * 24 15 14 26 26 H 1.08994 * 110.87213 * 96.24249 * 25 24 15 27 27 O 1.42903 * 110.71576 * 219.43721 * 25 24 15 28 28 C 1.39526 * 118.88271 * 359.97438 * 7 6 5 29 29 N 1.31695 * 120.56541 * 0.28068 * 28 7 6 30 30 H 1.08998 * 109.47286 * 300.00037 * 1 2 3 31 31 H 1.09001 * 109.46770 * 60.00550 * 1 2 3 32 32 H 1.08994 * 109.46866 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47554 * 239.99671 * 2 1 3 34 34 H 1.08997 * 109.47483 * 179.97438 * 3 2 1 35 35 H 1.09006 * 109.47233 * 299.99687 * 3 2 1 36 36 H 1.09004 * 109.47423 * 59.99602 * 3 2 1 37 37 H 1.08004 * 120.34526 * 0.02562 * 5 4 2 38 38 H 1.08004 * 120.85619 * 180.02562 * 6 5 4 39 39 H 0.96996 * 120.00073 * 359.97438 * 10 8 7 40 40 H 1.09005 * 109.46828 * 299.99384 * 11 10 8 41 41 H 1.09002 * 109.47644 * 59.99325 * 11 10 8 42 42 H 1.08993 * 110.36479 * 323.75179 * 14 12 11 43 43 H 1.08999 * 110.36484 * 86.07478 * 14 12 11 44 44 H 0.96997 * 120.00062 * 179.97438 * 19 18 16 45 45 H 1.08996 * 109.88873 * 239.52721 * 24 15 14 46 46 H 1.09004 * 110.00915 * 118.42834 * 24 15 14 47 47 H 0.96698 * 114.00596 * 293.52388 * 27 25 24 48 48 H 1.08002 * 119.71532 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.1601 -0.0093 2.4165 6 6 2.6211 -0.6648 3.5443 7 6 2.9426 -2.0233 3.4373 8 6 3.4390 -2.7730 4.6108 9 8 3.5715 -2.2101 5.6800 10 7 3.7447 -4.0805 4.4953 11 6 4.2361 -4.8235 5.6584 12 6 4.5050 -6.2759 5.2595 13 1 5.1304 -6.3246 4.3681 14 6 3.1788 -7.0491 5.0513 15 7 3.5255 -8.4628 5.2852 16 6 2.8489 -9.5436 4.7862 17 1 1.9796 -9.3956 4.1626 18 6 3.2801 -10.8295 5.0818 19 7 4.3392 -11.0099 5.8422 20 14 2.3566 -12.3039 4.4016 21 1 1.2102 -11.8350 3.5822 22 1 3.2705 -13.1134 3.5561 23 1 1.8552 -13.1354 5.5251 24 6 4.7185 -8.5200 6.1426 25 6 5.1450 -7.0653 6.4318 26 1 4.7464 -6.7265 7.3880 27 8 6.5685 -6.9415 6.4072 28 6 2.7857 -2.6580 2.2047 29 7 2.3478 -1.9893 1.1581 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6766 1.9564 0.8900 37 1 1.9019 1.0385 2.4615 38 1 2.7300 -0.1421 4.4831 39 1 3.6387 -4.5298 3.6422 40 1 5.1592 -4.3680 6.0169 41 1 3.4868 -4.7972 6.4495 42 1 2.4299 -6.7182 5.7706 43 1 2.8152 -6.9112 4.0330 44 1 4.6403 -11.9085 6.0490 45 1 5.5214 -9.0460 5.6262 46 1 4.4823 -9.0297 7.0768 47 1 7.0171 -7.4169 7.1198 48 1 3.0301 -3.7055 2.1069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958145980.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:49 Heat of formation + Delta-G solvation = -58.614463 kcal Electronic energy + Delta-G solvation = -28039.742624 eV Core-core repulsion = 24093.891749 eV Total energy + Delta-G solvation = -3945.850875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.81906 -40.53145 -39.67785 -36.65820 -36.52386 -36.18872 -34.08755 -33.60171 -32.08183 -30.86546 -29.28517 -28.04370 -27.34732 -26.06040 -24.94827 -24.25104 -22.53765 -22.02972 -21.53119 -21.05127 -19.28698 -18.77371 -18.26993 -17.79477 -17.12886 -16.94966 -16.57692 -16.47320 -16.07991 -15.77249 -15.60955 -15.38716 -14.89870 -14.77843 -14.62519 -14.41885 -14.10578 -14.05487 -13.80797 -13.75273 -13.54238 -13.21486 -13.11334 -12.87286 -12.76480 -12.45747 -12.27088 -12.21192 -12.07141 -11.94300 -11.87667 -11.79383 -11.55945 -11.25728 -10.98096 -10.83219 -10.74984 -10.46981 -10.29503 -9.98253 -8.94512 -7.87481 -5.23846 -0.44481 0.17464 1.46262 1.46589 1.57021 1.73852 1.99289 2.47115 2.75778 3.05270 3.22611 3.33529 3.54348 3.60116 3.62288 3.73133 3.79749 3.87905 3.95945 4.12934 4.14459 4.17247 4.27990 4.39431 4.44283 4.53350 4.60014 4.66107 4.73840 4.83001 4.86147 4.91582 4.92887 4.94407 5.00095 5.06401 5.20673 5.23293 5.34529 5.37167 5.41714 5.42540 5.48158 5.54779 5.70802 6.15649 6.38512 6.82550 6.88380 7.05010 7.06413 7.73018 8.36152 9.22845 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014570 B = 0.002353 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.269176 B =11895.020265 C =13412.807732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.050 4.050 3 C -0.146 4.146 4 C 0.151 3.849 5 C -0.170 4.170 6 C -0.021 4.021 7 C -0.205 4.205 8 C 0.565 3.435 9 O -0.574 6.574 10 N -0.710 5.710 11 C 0.147 3.853 12 C -0.090 4.090 13 H 0.088 0.912 14 C 0.138 3.862 15 N -0.625 5.625 16 C -0.240 4.240 17 H 0.087 0.913 18 C -0.068 4.068 19 N -0.952 5.952 20 Si 0.979 3.021 21 H -0.264 1.264 22 H -0.293 1.293 23 H -0.293 1.293 24 C 0.161 3.839 25 C 0.097 3.903 26 H 0.076 0.924 27 O -0.570 6.570 28 C 0.138 3.862 29 N -0.507 5.507 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.173 0.827 38 H 0.151 0.849 39 H 0.411 0.589 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.031 0.969 43 H 0.057 0.943 44 H 0.247 0.753 45 H 0.019 0.981 46 H 0.013 0.987 47 H 0.393 0.607 48 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.138 25.455 -8.991 27.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.069 4.069 3 C -0.203 4.203 4 C 0.014 3.986 5 C -0.190 4.190 6 C -0.047 4.047 7 C -0.210 4.210 8 C 0.353 3.647 9 O -0.455 6.455 10 N -0.361 5.361 11 C 0.023 3.977 12 C -0.110 4.110 13 H 0.106 0.894 14 C 0.013 3.987 15 N -0.352 5.352 16 C -0.369 4.369 17 H 0.105 0.895 18 C -0.261 4.261 19 N -0.601 5.601 20 Si 0.807 3.193 21 H -0.188 1.188 22 H -0.220 1.220 23 H -0.220 1.220 24 C 0.035 3.965 25 C 0.036 3.964 26 H 0.094 0.906 27 O -0.377 6.377 28 C -0.020 4.020 29 N -0.215 5.215 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.190 0.810 38 H 0.169 0.831 39 H 0.249 0.751 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.038 0.962 46 H 0.031 0.969 47 H 0.243 0.757 48 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.250 25.541 -9.542 27.594 hybrid contribution 0.063 -1.808 0.996 2.065 sum -4.188 23.733 -8.545 25.570 Atomic orbital electron populations 1.21798 0.92548 1.01906 1.03438 1.20214 0.96916 0.96375 0.93439 1.21939 1.01176 0.93373 1.03816 1.22009 0.91106 0.89436 0.96091 1.22264 1.01590 1.03205 0.91895 1.21915 0.90535 0.92246 0.99995 1.20898 1.08306 0.96697 0.95075 1.18273 0.76908 0.81797 0.87764 1.90751 1.55361 1.69494 1.29884 1.45846 1.66126 1.09578 1.14587 1.21167 0.99635 0.89034 0.87865 1.22420 0.96992 0.92680 0.98895 0.89365 1.21812 0.94221 0.83292 0.99360 1.44618 1.31193 1.01282 1.58133 1.19517 1.07826 0.84858 1.24674 0.89514 1.25672 0.99244 1.00223 1.00950 1.70166 1.27088 1.20429 1.42411 0.85004 0.77855 0.79155 0.77278 1.18797 1.22033 1.22030 1.21588 0.89098 0.92458 0.93345 1.22886 0.81128 0.94599 0.97740 0.90577 1.86388 1.18213 1.76020 1.57053 1.23203 0.91646 1.00456 0.86736 1.67587 1.12655 1.09622 1.31675 0.91759 0.90004 0.93716 0.89650 0.92706 0.90239 0.90836 0.80972 0.83093 0.75137 0.90920 0.91185 0.95136 0.92483 0.94398 0.96236 0.96901 0.75721 0.80975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.18 71.98 0.66 -0.76 16 2 C -0.05 -0.60 3.23 -11.54 -0.04 -0.63 16 3 C -0.15 -1.06 8.61 71.98 0.62 -0.44 16 4 C 0.15 2.56 5.79 42.57 0.25 2.81 16 5 C -0.17 -2.50 9.16 22.33 0.20 -2.30 16 6 C -0.02 -0.39 9.72 22.73 0.22 -0.17 16 7 C -0.20 -4.52 5.89 -19.99 -0.12 -4.63 16 8 C 0.56 15.00 7.78 86.78 0.68 15.68 16 9 O -0.57 -18.99 16.42 -3.88 -0.06 -19.05 16 10 N -0.71 -17.28 5.46 -465.98 -2.54 -19.82 16 11 C 0.15 4.06 5.13 86.38 0.44 4.51 16 12 C -0.09 -2.92 2.77 -9.40 -0.03 -2.95 16 13 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 14 C 0.14 5.22 6.65 86.86 0.58 5.80 16 15 N -0.63 -31.18 3.39 -691.98 -2.35 -33.53 16 16 C -0.24 -13.15 10.28 84.03 0.86 -12.29 16 17 H 0.09 4.51 7.83 -2.91 -0.02 4.49 16 18 C -0.07 -3.83 5.49 84.86 0.47 -3.37 16 19 N -0.95 -56.69 10.31 21.65 0.22 -56.47 16 20 Si 0.98 45.32 29.55 68.60 2.03 47.35 16 21 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 24 C 0.16 7.74 5.15 86.73 0.45 8.19 16 25 C 0.10 3.48 3.80 31.78 0.12 3.60 16 26 H 0.08 2.48 8.04 -2.39 -0.02 2.46 16 27 O -0.57 -18.88 13.39 -148.98 -1.99 -20.87 16 28 C 0.14 2.83 10.71 85.02 0.91 3.74 16 29 N -0.51 -10.77 10.25 -182.81 -1.87 -12.64 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.56 8.14 -2.39 -0.02 0.55 16 32 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.08 0.38 8.14 -2.38 -0.02 0.37 16 36 H 0.07 0.36 6.48 -2.38 -0.02 0.35 16 37 H 0.17 1.40 6.29 -2.91 -0.02 1.39 16 38 H 0.15 2.70 7.74 -2.91 -0.02 2.67 16 39 H 0.41 8.33 6.54 -92.71 -0.61 7.72 16 40 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 41 H 0.07 2.00 7.96 -2.39 -0.02 1.98 16 42 H 0.03 1.14 7.90 -2.39 -0.02 1.12 16 43 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 45 H 0.02 1.08 7.29 -2.39 -0.02 1.06 16 46 H 0.01 0.69 7.51 -2.38 -0.02 0.67 16 47 H 0.39 10.06 9.12 -74.06 -0.68 9.39 16 48 H 0.17 2.86 6.42 -2.91 -0.02 2.84 16 Total: -1.00 -73.93 390.14 -0.59 -74.52 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: -0.30 Total: 23.71 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 6.27 Total: 16.79 kcal Atomic # 7 Polarization: -115.92 SS G_CDS: -6.54 Total: -122.46 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -2.06 Total: -39.92 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -73.93 -0.59 -74.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958145980.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.908 kcal (2) G-P(sol) polarization free energy of solvation -73.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds