Wall clock time and date at job start Tue Mar 31 2020 18:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.50703 * 109.46912 * 179.97438 * 3 2 1 5 5 C 1.38179 * 119.55033 * 124.99484 * 4 3 2 6 6 C 1.39793 * 118.99797 * 180.02562 * 5 4 3 7 7 C 1.48152 * 120.92219 * 180.02562 * 6 5 4 8 8 O 1.21509 * 120.00054 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00002 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00031 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47137 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.89181 * 305.69934 * 11 10 9 13 13 C 1.54916 * 111.00781 * 69.58449 * 11 10 9 14 14 N 1.47421 * 104.83623 * 155.08342 * 13 11 10 15 15 C 1.36933 * 125.64909 * 155.90621 * 14 13 11 16 16 H 1.08001 * 120.00074 * 0.02562 * 15 14 13 17 17 C 1.38811 * 120.00039 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99826 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00104 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47133 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47125 * 119.99670 * 19 17 15 22 22 H 1.48500 * 109.47316 * 239.99739 * 19 17 15 23 23 C 1.47025 * 108.70059 * 335.86882 * 14 13 11 24 24 C 1.54370 * 107.29026 * 1.09422 * 23 14 13 25 25 H 1.09005 * 110.75660 * 140.50170 * 24 23 14 26 26 O 1.42895 * 110.70727 * 263.79038 * 24 23 14 27 27 C 1.39841 * 118.15707 * 0.02562 * 6 5 4 28 28 C 1.38123 * 119.00212 * 0.02562 * 27 6 5 29 29 N 1.31793 * 119.55511 * 304.72984 * 4 3 2 30 30 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 31 31 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 32 32 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 34 34 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 35 35 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 36 36 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 37 37 H 1.07991 * 120.49906 * 359.97438 * 5 4 3 38 38 H 0.97008 * 120.00048 * 0.02562 * 9 7 6 39 39 H 1.09000 * 109.47206 * 300.00178 * 10 9 7 40 40 H 1.08997 * 109.46763 * 60.00300 * 10 9 7 41 41 H 1.09002 * 110.35980 * 273.92555 * 13 11 10 42 42 H 1.09000 * 110.36482 * 36.24196 * 13 11 10 43 43 H 0.97004 * 119.99625 * 179.97438 * 18 17 15 44 44 H 1.09004 * 109.88128 * 120.48036 * 23 14 13 45 45 H 1.08995 * 109.88324 * 241.48507 * 23 14 13 46 46 H 0.96692 * 114.00041 * 293.49342 * 26 24 23 47 47 H 1.07995 * 120.49935 * 180.02562 * 27 6 5 48 48 H 1.07998 * 119.55485 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2289 2.1317 -0.9839 6 6 5.6268 2.1235 -0.9726 7 6 6.4008 2.8484 -2.0072 8 8 5.8209 3.4609 -2.8818 9 7 7.7480 2.8285 -1.9782 10 6 8.5134 3.5448 -3.0015 11 6 10.0098 3.3618 -2.7406 12 1 10.2663 3.6594 -1.7239 13 6 10.4476 1.9021 -3.0191 14 7 11.8853 1.9926 -3.3325 15 6 12.7975 0.9808 -3.1940 16 1 12.4816 0.0153 -2.8271 17 6 14.1283 1.1959 -3.5250 18 7 14.5132 2.3723 -3.9726 19 14 15.3725 -0.1846 -3.3367 20 1 14.6907 -1.3984 -2.8203 21 1 15.9831 -0.4842 -4.6569 22 1 16.4329 0.2314 -2.3839 23 6 12.1772 3.3488 -3.8194 24 6 10.8553 4.1451 -3.7794 25 1 11.0300 5.1670 -3.4426 26 8 10.2202 4.1347 -5.0594 27 6 6.2743 1.4120 0.0423 28 6 5.5137 0.7500 0.9863 29 7 4.1967 0.7895 0.9432 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3635 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8899 37 1 3.6901 2.6679 -1.7510 38 1 8.2110 2.3391 -1.2801 39 1 8.2652 3.1472 -3.9856 40 1 8.2649 4.6055 -2.9650 41 1 10.2901 1.2838 -2.1353 42 1 9.8987 1.4971 -3.8692 43 1 15.4432 2.5228 -4.2036 44 1 12.9152 3.8239 -3.1730 45 1 12.5545 3.3027 -4.8409 46 1 10.7087 4.6110 -5.7446 47 1 7.3529 1.3807 0.0875 48 1 6.0045 0.1975 1.7738 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958159198.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:56 Heat of formation + Delta-G solvation = -36.166537 kcal Electronic energy + Delta-G solvation = -27943.578313 eV Core-core repulsion = 23998.700853 eV Total energy + Delta-G solvation = -3944.877460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.89217 -39.39137 -38.27221 -35.54022 -35.04897 -34.66175 -32.95733 -32.11287 -31.59375 -29.71446 -27.82750 -27.31184 -25.90504 -24.66378 -23.21475 -23.18216 -21.79114 -20.64144 -20.16291 -19.69756 -18.04287 -17.41807 -16.91154 -16.42422 -15.90913 -15.75718 -15.40152 -15.15507 -15.09064 -14.86755 -14.35851 -14.14415 -14.04782 -13.82297 -13.76800 -13.43390 -13.13542 -12.80005 -12.63447 -12.45125 -12.36184 -11.94631 -11.59071 -11.51420 -11.47458 -11.28247 -11.02320 -10.87918 -10.69527 -10.54938 -10.40649 -10.11676 -10.09281 -10.02858 -9.85195 -9.65139 -9.27961 -9.23569 -9.02816 -8.71498 -6.92114 -5.79840 -3.13047 0.48411 0.79182 2.76082 3.00576 3.34684 3.40534 3.42798 3.58338 3.92401 4.32799 4.35990 4.42127 4.65075 4.67265 4.69052 4.74648 4.86858 4.88423 5.04564 5.22947 5.25265 5.27471 5.34160 5.42740 5.45687 5.47983 5.49070 5.53684 5.61773 5.73789 5.77487 5.83563 5.91600 5.98064 6.02021 6.03327 6.29692 6.30391 6.32958 6.37801 6.52560 6.82299 7.32987 7.40167 7.43367 7.63985 7.69344 8.06924 8.15203 8.18703 9.12983 9.73596 10.38814 11.32238 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017587 B = 0.002192 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.725276 B =12768.451103 C =13901.816529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.069 4.069 4 C 0.125 3.875 5 C -0.115 4.115 6 C -0.080 4.080 7 C 0.554 3.446 8 O -0.532 6.532 9 N -0.716 5.716 10 C 0.140 3.860 11 C -0.110 4.110 12 H 0.089 0.911 13 C 0.145 3.855 14 N -0.603 5.603 15 C -0.227 4.227 16 H 0.079 0.921 17 C -0.010 4.010 18 N -0.924 5.924 19 Si 0.913 3.087 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.153 3.847 24 C 0.083 3.917 25 H 0.058 0.942 26 O -0.564 6.564 27 C -0.148 4.148 28 C 0.102 3.898 29 N -0.468 5.468 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.147 0.853 38 H 0.401 0.599 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.036 0.964 42 H 0.026 0.974 43 H 0.252 0.748 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.376 0.624 47 H 0.141 0.859 48 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.155 0.977 8.860 22.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.107 4.107 4 C -0.012 4.012 5 C -0.135 4.135 6 C -0.091 4.091 7 C 0.339 3.661 8 O -0.409 6.409 9 N -0.367 5.367 10 C 0.017 3.983 11 C -0.130 4.130 12 H 0.107 0.893 13 C 0.018 3.982 14 N -0.329 5.329 15 C -0.355 4.355 16 H 0.097 0.903 17 C -0.206 4.206 18 N -0.572 5.572 19 Si 0.744 3.256 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.217 1.217 23 C 0.027 3.973 24 C 0.023 3.977 25 H 0.076 0.924 26 O -0.370 6.370 27 C -0.168 4.168 28 C -0.055 4.055 29 N -0.178 5.178 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.164 0.836 38 H 0.236 0.764 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.054 0.946 42 H 0.044 0.956 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.223 0.777 47 H 0.159 0.841 48 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -22.217 0.606 9.131 24.028 hybrid contribution 2.202 -0.141 -0.524 2.268 sum -20.015 0.465 8.606 21.792 Atomic orbital electron populations 1.21784 0.95589 1.01800 1.01820 1.21443 0.95591 0.95496 1.02929 1.20601 0.87977 0.98649 1.03444 1.21279 0.96968 0.92777 0.90212 1.22140 0.93282 0.98724 0.99400 1.20449 0.94529 0.98259 0.95865 1.18144 0.82392 0.80865 0.84652 1.90779 1.69935 1.43353 1.36841 1.46035 1.05721 1.53274 1.31675 1.21254 0.89421 0.96347 0.91297 1.22694 0.92486 0.99035 0.98786 0.89262 1.21582 0.86917 0.92307 0.97364 1.44374 1.02201 1.09728 1.76598 1.19116 0.87871 0.91152 1.37356 0.90301 1.24806 0.97147 0.97245 1.01367 1.69942 1.15893 1.21141 1.50247 0.86016 0.81325 0.80926 0.77324 1.20478 1.21728 1.21735 1.21874 0.90687 0.84661 1.00034 1.23126 0.94047 0.97391 0.83127 0.92447 1.86397 1.51320 1.79255 1.20008 1.22395 1.01769 0.97580 0.95090 1.22742 0.89102 0.96255 0.97436 1.67332 1.10195 1.16896 1.23382 0.92639 0.92700 0.92614 0.92116 0.90800 0.90081 0.89804 0.83561 0.76404 0.89955 0.91484 0.94582 0.95649 0.93756 0.92930 0.93137 0.77704 0.84127 0.81964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.85 5.79 -26.73 -0.15 -1.01 16 3 C -0.07 -0.52 5.61 -27.88 -0.16 -0.68 16 4 C 0.13 1.25 6.17 -82.63 -0.51 0.74 16 5 C -0.11 -1.26 9.28 -39.02 -0.36 -1.62 16 6 C -0.08 -0.93 5.91 -104.65 -0.62 -1.54 16 7 C 0.55 7.75 7.80 -12.19 -0.10 7.65 16 8 O -0.53 -9.21 16.45 5.36 0.09 -9.12 16 9 N -0.72 -9.23 5.41 -61.16 -0.33 -9.56 16 10 C 0.14 2.09 4.67 -4.04 -0.02 2.07 16 11 C -0.11 -1.80 3.00 -88.47 -0.26 -2.06 16 12 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 13 C 0.14 2.86 6.55 -2.53 -0.02 2.84 16 14 N -0.60 -14.85 3.39 -170.04 -0.58 -15.43 16 15 C -0.23 -6.16 10.28 -15.06 -0.15 -6.32 16 16 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 17 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 18 N -0.92 -26.41 10.31 55.49 0.57 -25.84 16 19 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 C 0.15 3.51 5.14 -3.04 -0.02 3.49 16 24 C 0.08 1.47 4.09 -24.87 -0.10 1.37 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 26 O -0.56 -9.59 12.17 -35.23 -0.43 -10.02 16 27 C -0.15 -1.38 9.62 -39.02 -0.38 -1.76 16 28 C 0.10 0.92 11.17 -17.59 -0.20 0.72 16 29 N -0.47 -4.89 9.86 -9.52 -0.09 -4.98 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.60 7.95 -51.93 -0.41 0.19 16 35 H 0.08 0.51 7.87 -51.93 -0.41 0.11 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.15 1.54 7.63 -52.49 -0.40 1.14 16 38 H 0.40 4.27 6.58 -40.82 -0.27 4.01 16 39 H 0.08 1.43 7.49 -51.93 -0.39 1.04 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.03 0.54 7.96 -51.93 -0.41 0.13 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.05 1.33 7.38 -51.93 -0.38 0.94 16 45 H 0.05 1.30 7.43 -51.93 -0.39 0.91 16 46 H 0.38 5.03 9.12 45.56 0.42 5.44 16 47 H 0.14 1.01 6.54 -52.49 -0.34 0.67 16 48 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 392.33 15.07 5.91 5.91 Total: -1.00 -33.54 392.33 -9.41 -42.95 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.76 Total: 6.41 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -2.77 Total: 3.02 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.43 Total: -55.82 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.34 Total: -19.15 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.54 -9.41 -42.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958159198.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.784 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds