Wall clock time and date at job start Tue Mar 31 2020 18:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.50703 * 109.46912 * 179.97438 * 3 2 1 5 5 C 1.38179 * 119.55033 * 124.99484 * 4 3 2 6 6 C 1.39793 * 118.99797 * 180.02562 * 5 4 3 7 7 C 1.48152 * 120.92219 * 180.02562 * 6 5 4 8 8 O 1.21509 * 120.00054 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00002 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00031 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47137 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.89181 * 305.69934 * 11 10 9 13 13 C 1.54916 * 111.00781 * 69.58449 * 11 10 9 14 14 N 1.47421 * 104.83623 * 155.08342 * 13 11 10 15 15 C 1.36933 * 125.64909 * 155.90621 * 14 13 11 16 16 H 1.08001 * 120.00074 * 0.02562 * 15 14 13 17 17 C 1.38811 * 120.00039 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99826 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00104 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47133 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47125 * 119.99670 * 19 17 15 22 22 H 1.48500 * 109.47316 * 239.99739 * 19 17 15 23 23 C 1.47025 * 108.70059 * 335.86882 * 14 13 11 24 24 C 1.54370 * 107.29026 * 1.09422 * 23 14 13 25 25 H 1.09005 * 110.75660 * 140.50170 * 24 23 14 26 26 O 1.42895 * 110.70727 * 263.79038 * 24 23 14 27 27 C 1.39841 * 118.15707 * 0.02562 * 6 5 4 28 28 C 1.38123 * 119.00212 * 0.02562 * 27 6 5 29 29 N 1.31793 * 119.55511 * 304.72984 * 4 3 2 30 30 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 31 31 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 32 32 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 34 34 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 35 35 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 36 36 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 37 37 H 1.07991 * 120.49906 * 359.97438 * 5 4 3 38 38 H 0.97008 * 120.00048 * 0.02562 * 9 7 6 39 39 H 1.09000 * 109.47206 * 300.00178 * 10 9 7 40 40 H 1.08997 * 109.46763 * 60.00300 * 10 9 7 41 41 H 1.09002 * 110.35980 * 273.92555 * 13 11 10 42 42 H 1.09000 * 110.36482 * 36.24196 * 13 11 10 43 43 H 0.97004 * 119.99625 * 179.97438 * 18 17 15 44 44 H 1.09004 * 109.88128 * 120.48036 * 23 14 13 45 45 H 1.08995 * 109.88324 * 241.48507 * 23 14 13 46 46 H 0.96692 * 114.00041 * 293.49342 * 26 24 23 47 47 H 1.07995 * 120.49935 * 180.02562 * 27 6 5 48 48 H 1.07998 * 119.55485 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2289 2.1317 -0.9839 6 6 5.6268 2.1235 -0.9726 7 6 6.4008 2.8484 -2.0072 8 8 5.8209 3.4609 -2.8818 9 7 7.7480 2.8285 -1.9782 10 6 8.5134 3.5448 -3.0015 11 6 10.0098 3.3618 -2.7406 12 1 10.2663 3.6594 -1.7239 13 6 10.4476 1.9021 -3.0191 14 7 11.8853 1.9926 -3.3325 15 6 12.7975 0.9808 -3.1940 16 1 12.4816 0.0153 -2.8271 17 6 14.1283 1.1959 -3.5250 18 7 14.5132 2.3723 -3.9726 19 14 15.3725 -0.1846 -3.3367 20 1 14.6907 -1.3984 -2.8203 21 1 15.9831 -0.4842 -4.6569 22 1 16.4329 0.2314 -2.3839 23 6 12.1772 3.3488 -3.8194 24 6 10.8553 4.1451 -3.7794 25 1 11.0300 5.1670 -3.4426 26 8 10.2202 4.1347 -5.0594 27 6 6.2743 1.4120 0.0423 28 6 5.5137 0.7500 0.9863 29 7 4.1967 0.7895 0.9432 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3635 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8899 37 1 3.6901 2.6679 -1.7510 38 1 8.2110 2.3391 -1.2801 39 1 8.2652 3.1472 -3.9856 40 1 8.2649 4.6055 -2.9650 41 1 10.2901 1.2838 -2.1353 42 1 9.8987 1.4971 -3.8692 43 1 15.4432 2.5228 -4.2036 44 1 12.9152 3.8239 -3.1730 45 1 12.5545 3.3027 -4.8409 46 1 10.7087 4.6110 -5.7446 47 1 7.3529 1.3807 0.0875 48 1 6.0045 0.1975 1.7738 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958159198.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:55 Heat of formation + Delta-G solvation = -60.119019 kcal Electronic energy + Delta-G solvation = -27944.616970 eV Core-core repulsion = 23998.700853 eV Total energy + Delta-G solvation = -3945.916117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.75764 -40.50487 -39.69895 -36.43568 -36.27806 -36.04472 -34.12386 -33.53683 -32.32559 -31.30101 -29.47440 -27.92350 -27.43564 -26.04731 -24.48686 -23.90522 -22.57339 -22.12247 -21.50168 -20.91720 -19.17678 -18.96066 -18.12921 -17.66245 -16.86338 -16.71821 -16.62303 -16.50107 -16.08162 -15.79030 -15.78005 -15.37309 -15.11770 -14.96299 -14.80503 -14.62200 -14.39661 -14.23723 -13.80829 -13.55752 -13.15947 -13.13078 -13.01572 -12.95677 -12.71334 -12.34002 -12.19445 -12.09516 -12.04967 -11.91065 -11.78670 -11.68209 -11.57924 -11.31316 -10.97265 -10.80109 -10.73649 -10.48091 -10.18252 -9.99216 -8.91598 -7.86950 -5.21874 -0.36503 0.05798 1.45893 1.46849 1.56764 1.76805 1.94662 2.47982 2.78357 3.25751 3.27592 3.34627 3.45659 3.54991 3.65714 3.89307 3.92037 3.93107 3.97213 4.01402 4.19407 4.23275 4.28375 4.41548 4.56625 4.60214 4.62066 4.68228 4.79655 4.82285 4.86322 4.89537 4.91423 4.97762 5.00407 5.04416 5.22843 5.25630 5.35651 5.36653 5.42132 5.48641 5.52236 5.62162 5.70225 6.17101 6.37353 6.90544 6.92096 7.02529 7.08647 7.75259 8.39324 9.23432 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017587 B = 0.002192 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.725276 B =12768.451103 C =13901.816529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.068 4.068 4 C 0.121 3.879 5 C -0.126 4.126 6 C -0.096 4.096 7 C 0.555 3.445 8 O -0.571 6.571 9 N -0.706 5.706 10 C 0.155 3.845 11 C -0.093 4.093 12 H 0.111 0.889 13 C 0.142 3.858 14 N -0.624 5.624 15 C -0.239 4.239 16 H 0.084 0.916 17 C -0.067 4.067 18 N -0.951 5.951 19 Si 0.977 3.023 20 H -0.265 1.265 21 H -0.296 1.296 22 H -0.291 1.291 23 C 0.159 3.841 24 C 0.095 3.905 25 H 0.088 0.912 26 O -0.571 6.571 27 C -0.141 4.141 28 C 0.101 3.899 29 N -0.481 5.481 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.143 0.857 38 H 0.414 0.586 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.011 0.989 43 H 0.246 0.754 44 H 0.024 0.976 45 H 0.013 0.987 46 H 0.391 0.609 47 H 0.165 0.835 48 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.220 0.441 10.647 24.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.106 4.106 4 C -0.016 4.016 5 C -0.147 4.147 6 C -0.107 4.107 7 C 0.342 3.658 8 O -0.451 6.451 9 N -0.358 5.358 10 C 0.031 3.969 11 C -0.112 4.112 12 H 0.129 0.871 13 C 0.017 3.983 14 N -0.350 5.350 15 C -0.368 4.368 16 H 0.102 0.898 17 C -0.260 4.260 18 N -0.601 5.601 19 Si 0.806 3.194 20 H -0.189 1.189 21 H -0.224 1.224 22 H -0.218 1.218 23 C 0.033 3.967 24 C 0.035 3.965 25 H 0.106 0.894 26 O -0.379 6.379 27 C -0.161 4.161 28 C -0.056 4.056 29 N -0.191 5.191 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.161 0.839 38 H 0.251 0.749 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.029 0.971 43 H 0.056 0.944 44 H 0.042 0.958 45 H 0.031 0.969 46 H 0.240 0.760 47 H 0.182 0.818 48 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -23.306 0.055 10.938 25.745 hybrid contribution 2.506 -0.015 -1.092 2.734 sum -20.800 0.040 9.846 23.013 Atomic orbital electron populations 1.21762 0.94373 1.02190 1.02384 1.21390 0.96609 0.95097 1.01970 1.20679 0.86596 0.98980 1.04357 1.21572 0.98032 0.92260 0.89736 1.22219 0.93342 0.99269 0.99846 1.20347 0.94668 0.99413 0.96268 1.18481 0.82480 0.80262 0.84527 1.90756 1.70663 1.45167 1.38550 1.45874 1.05474 1.52992 1.31431 1.20938 0.88497 0.96743 0.90725 1.22586 0.92996 0.96167 0.99455 0.87072 1.21705 0.84247 0.95009 0.97386 1.44692 1.03915 1.09822 1.76598 1.19501 0.88656 0.92083 1.36530 0.89836 1.25625 0.99047 0.99486 1.01844 1.70153 1.15698 1.22828 1.51401 0.85020 0.78862 0.78810 0.76704 1.18936 1.22354 1.21768 1.21699 0.93063 0.84858 0.97031 1.22978 0.91450 0.98128 0.83952 0.89410 1.86379 1.51389 1.79781 1.20364 1.22635 1.02976 0.96464 0.94060 1.23282 0.88744 0.95781 0.97805 1.67410 1.11059 1.17075 1.23565 0.92014 0.92196 0.92338 0.93038 0.91748 0.89042 0.88984 0.83888 0.74870 0.92329 0.90831 0.92709 0.97129 0.94419 0.95794 0.96868 0.75959 0.81800 0.78994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 71.98 0.71 -0.82 16 2 C -0.11 -1.53 5.79 30.59 0.18 -1.36 16 3 C -0.07 -0.95 5.61 29.85 0.17 -0.78 16 4 C 0.12 2.29 6.17 42.55 0.26 2.55 16 5 C -0.13 -2.68 9.28 22.63 0.21 -2.47 16 6 C -0.10 -2.10 5.91 -19.88 -0.12 -2.22 16 7 C 0.56 14.94 7.80 86.88 0.68 15.62 16 8 O -0.57 -19.70 16.45 -3.74 -0.06 -19.76 16 9 N -0.71 -16.81 5.41 -465.70 -2.52 -19.33 16 10 C 0.15 4.36 4.67 86.38 0.40 4.76 16 11 C -0.09 -2.82 3.00 -9.40 -0.03 -2.85 16 12 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 13 C 0.14 5.43 6.55 86.86 0.57 6.00 16 14 N -0.62 -30.77 3.39 -691.89 -2.35 -33.12 16 15 C -0.24 -12.99 10.28 84.03 0.86 -12.12 16 16 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 17 C -0.07 -3.74 5.49 84.86 0.47 -3.27 16 18 N -0.95 -55.69 10.31 21.65 0.22 -55.47 16 19 Si 0.98 44.83 29.55 68.60 2.03 46.86 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 22 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 23 C 0.16 7.40 5.14 86.74 0.45 7.85 16 24 C 0.10 3.23 4.09 31.80 0.13 3.36 16 25 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 26 O -0.57 -18.91 12.17 -148.98 -1.81 -20.72 16 27 C -0.14 -2.29 9.62 22.63 0.22 -2.07 16 28 C 0.10 1.56 11.17 84.67 0.95 2.51 16 29 N -0.48 -9.18 9.86 -184.04 -1.81 -10.99 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 0.99 7.95 -2.39 -0.02 0.97 16 35 H 0.09 1.06 7.87 -2.39 -0.02 1.04 16 36 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.14 3.03 7.63 -2.92 -0.02 3.01 16 38 H 0.41 7.62 6.58 -92.70 -0.61 7.01 16 39 H 0.06 1.98 7.49 -2.39 -0.02 1.96 16 40 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16 42 H 0.01 0.45 7.96 -2.39 -0.02 0.43 16 43 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 44 H 0.02 1.24 7.38 -2.38 -0.02 1.22 16 45 H 0.01 0.70 7.43 -2.39 -0.02 0.68 16 46 H 0.39 10.18 9.12 -74.06 -0.68 9.51 16 47 H 0.16 1.78 6.54 -2.91 -0.02 1.76 16 48 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -73.91 392.33 -0.51 -74.42 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -0.31 Total: 23.42 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 6.10 Total: 14.69 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -6.46 Total: -118.91 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -1.87 Total: -40.48 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -73.91 -0.51 -74.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958159198.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.297 kcal (2) G-P(sol) polarization free energy of solvation -73.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds