Wall clock time and date at job start Tue Mar 31 2020 18:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46844 * 2 1 4 4 C 1.50700 * 109.47194 * 119.99672 * 2 1 3 5 5 C 1.38609 * 119.55136 * 274.99968 * 4 2 1 6 6 C 1.38576 * 119.35111 * 179.97438 * 5 4 2 7 7 C 1.38632 * 118.48904 * 0.02562 * 6 5 4 8 8 C 1.39264 * 119.06304 * 359.97438 * 7 6 5 9 9 C 1.48169 * 119.72434 * 180.02562 * 8 7 6 10 10 O 1.21513 * 119.99903 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99782 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72355 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 H 1.08998 * 110.63837 * 56.68628 * 13 12 11 15 15 C 1.54319 * 110.71874 * 293.54467 * 13 12 11 16 16 N 1.47013 * 107.27192 * 219.44212 * 15 13 12 17 17 C 1.36944 * 125.64988 * 178.91021 * 16 15 13 18 18 H 1.07995 * 119.99658 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00144 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99832 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99789 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47086 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46967 * 119.99668 * 21 19 17 24 24 H 1.48500 * 109.46992 * 239.99210 * 21 19 17 25 25 C 1.47425 * 108.70574 * 358.94341 * 16 15 13 26 26 C 1.54907 * 104.83095 * 24.12747 * 25 16 15 27 27 H 1.08997 * 111.00498 * 81.06068 * 26 25 16 28 28 O 1.42901 * 111.00522 * 204.91998 * 26 25 16 29 29 N 1.31494 * 119.54901 * 95.25732 * 4 2 1 30 30 H 1.09006 * 109.46744 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47339 * 299.99973 * 1 2 3 32 32 H 1.08996 * 109.47494 * 60.00430 * 1 2 3 33 33 H 1.09000 * 109.46891 * 239.99841 * 2 1 3 34 34 H 1.09000 * 109.47329 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.46746 * 300.00061 * 3 2 1 36 36 H 1.08997 * 109.47767 * 59.99760 * 3 2 1 37 37 H 1.08000 * 120.32094 * 359.95901 * 5 4 2 38 38 H 1.08003 * 120.75659 * 180.02562 * 6 5 4 39 39 H 1.08007 * 120.46762 * 179.97438 * 7 6 5 40 40 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 41 41 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 42 42 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 43 43 H 1.09002 * 109.88492 * 338.86040 * 15 13 12 44 44 H 1.09006 * 109.88094 * 100.02375 * 15 13 12 45 45 H 0.97007 * 119.99668 * 180.02562 * 20 19 17 46 46 H 1.08998 * 110.37003 * 142.96747 * 25 16 15 47 47 H 1.09005 * 110.36704 * 265.18125 * 25 16 15 48 48 H 0.96698 * 113.99920 * 292.19712 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.1612 -0.0098 2.4196 6 6 2.6230 -0.6672 3.5486 7 6 2.9423 -2.0124 3.4464 8 6 2.7882 -2.6529 2.2194 9 6 3.1246 -4.0904 2.0937 10 8 3.5335 -4.7053 3.0588 11 7 2.9771 -4.7159 0.9090 12 6 3.3154 -6.1357 0.7833 13 6 3.0652 -6.5942 -0.6548 14 1 3.6331 -5.9839 -1.3570 15 6 1.5589 -6.5506 -0.9875 16 7 1.2566 -7.7384 -1.7993 17 6 0.0221 -8.0818 -2.2825 18 1 -0.8327 -7.4557 -2.0739 19 6 -0.1306 -9.2352 -3.0397 20 7 0.9111 -9.9985 -3.2935 21 14 -1.8147 -9.7039 -3.6982 22 1 -2.8118 -8.6880 -3.2754 23 1 -1.7670 -9.7641 -5.1813 24 1 -2.2039 -11.0325 -3.1612 25 6 2.5023 -8.4991 -2.0063 26 6 3.4143 -8.0970 -0.8205 27 1 3.1579 -8.6589 0.0776 28 8 4.7933 -8.2687 -1.1536 29 7 2.3473 -1.9850 1.1602 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6765 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 1.9043 1.0382 2.4655 38 1 2.7317 -0.1435 4.4870 39 1 3.3055 -2.5559 4.3062 40 1 2.6511 -4.2249 0.1386 41 1 4.3662 -6.2825 1.0338 42 1 2.6949 -6.7188 1.4637 43 1 0.9752 -6.5722 -0.0671 44 1 1.3302 -5.6471 -1.5528 45 1 0.8044 -10.8043 -3.8229 46 1 2.3010 -9.5701 -1.9839 47 1 2.9640 -8.2204 -2.9536 48 1 5.0584 -9.1917 -1.2673 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958223251.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:11 Heat of formation + Delta-G solvation = -32.750093 kcal Electronic energy + Delta-G solvation = -28459.152791 eV Core-core repulsion = 24514.423480 eV Total energy + Delta-G solvation = -3944.729312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.93577 -39.30894 -38.12700 -35.83018 -35.16460 -34.66144 -33.00248 -32.11959 -30.68071 -29.59785 -27.63193 -27.47421 -25.82059 -24.67568 -24.17222 -23.21612 -21.34789 -20.55906 -20.05346 -19.64595 -17.95217 -17.16500 -16.94421 -16.75054 -16.13984 -15.53345 -15.49018 -15.15206 -14.91718 -14.62672 -14.35296 -14.12453 -13.88767 -13.70492 -13.40944 -13.14509 -12.97375 -12.78340 -12.61399 -12.38326 -12.30084 -11.93794 -11.75260 -11.54026 -11.49207 -11.24210 -11.23142 -10.95790 -10.81693 -10.60574 -10.34949 -10.21152 -10.02982 -9.90751 -9.72544 -9.61183 -9.29892 -9.14379 -8.89285 -8.70435 -6.89803 -5.70798 -3.13041 0.43876 0.93494 2.66665 3.10958 3.37425 3.42998 3.45542 3.66651 3.75149 4.27800 4.41666 4.54380 4.65731 4.71684 4.73633 4.78899 4.86712 4.95682 5.05853 5.16974 5.27513 5.30235 5.39178 5.45195 5.47928 5.51644 5.56151 5.63466 5.69107 5.72942 5.83914 5.94165 5.95097 5.97465 6.05383 6.07724 6.22893 6.30451 6.40446 6.50440 6.63151 6.84259 7.36940 7.41162 7.55956 7.69947 7.75220 8.17233 8.21067 8.29888 9.15722 9.76498 10.39880 11.33329 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011890 B = 0.002805 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.370009 B = 9978.414838 C =11502.159505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.048 4.048 3 C -0.147 4.147 4 C 0.137 3.863 5 C -0.151 4.151 6 C -0.080 4.080 7 C -0.119 4.119 8 C 0.088 3.912 9 C 0.568 3.432 10 O -0.538 6.538 11 N -0.701 5.701 12 C 0.131 3.869 13 C -0.105 4.105 14 H 0.087 0.913 15 C 0.141 3.859 16 N -0.601 5.601 17 C -0.222 4.222 18 H 0.080 0.920 19 C -0.012 4.012 20 N -0.923 5.923 21 Si 0.916 3.084 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.128 3.872 26 C 0.081 3.919 27 H 0.061 0.939 28 O -0.569 6.569 29 N -0.456 5.456 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.148 0.852 40 H 0.412 0.588 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.029 0.971 44 H 0.026 0.974 45 H 0.252 0.748 46 H 0.109 0.891 47 H 0.022 0.978 48 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.284 20.907 10.515 23.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.067 4.067 3 C -0.205 4.205 4 C -0.004 4.004 5 C -0.171 4.171 6 C -0.106 4.106 7 C -0.140 4.140 8 C -0.051 4.051 9 C 0.352 3.648 10 O -0.415 6.415 11 N -0.352 5.352 12 C 0.008 3.992 13 C -0.124 4.124 14 H 0.105 0.895 15 C 0.015 3.985 16 N -0.328 5.328 17 C -0.350 4.350 18 H 0.098 0.902 19 C -0.207 4.207 20 N -0.572 5.572 21 Si 0.747 3.253 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.003 3.997 26 C 0.021 3.979 27 H 0.079 0.921 28 O -0.374 6.374 29 N -0.167 5.167 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.166 0.834 40 H 0.248 0.752 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.047 0.953 44 H 0.044 0.956 45 H 0.063 0.937 46 H 0.127 0.873 47 H 0.040 0.960 48 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 4.391 20.443 10.321 23.318 hybrid contribution -0.921 -0.138 0.016 0.932 sum 3.470 20.304 10.337 23.047 Atomic orbital electron populations 1.21815 0.93305 1.02780 1.02125 1.20093 0.96431 0.95333 0.94892 1.21931 1.01366 0.94802 1.02398 1.21265 0.94691 0.89339 0.95096 1.22204 0.99947 1.01700 0.93248 1.21615 0.95933 0.94005 0.99046 1.22123 0.98267 0.95044 0.98560 1.21185 0.98951 0.94603 0.90325 1.17861 0.78341 0.85157 0.83466 1.90777 1.46594 1.66172 1.37991 1.45903 1.65307 1.11852 1.12118 1.21507 1.01020 0.79767 0.96912 1.22402 0.98105 0.96920 0.94960 0.89502 1.21364 0.90988 0.91442 0.94685 1.44329 1.05132 1.22911 1.60466 1.19146 0.84598 1.05402 1.25888 0.90231 1.24803 0.97791 0.97632 1.00467 1.69777 1.27568 1.16087 1.43735 0.85968 0.82882 0.78085 0.78384 1.20473 1.21701 1.21702 1.22539 0.84324 1.00617 0.92222 1.23313 0.81416 0.94185 0.98980 0.92102 1.86372 1.26105 1.31479 1.93409 1.67377 1.09459 1.09040 1.30849 0.91929 0.92613 0.91634 0.88767 0.92316 0.91596 0.92224 0.84193 0.84080 0.83435 0.75158 0.90951 0.91045 0.95330 0.95592 0.93705 0.87328 0.95976 0.77653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.18 37.16 0.34 -0.73 16 2 C -0.05 -0.39 3.23 -91.77 -0.30 -0.68 16 3 C -0.15 -0.84 8.62 37.16 0.32 -0.52 16 4 C 0.14 1.36 5.79 -82.60 -0.48 0.88 16 5 C -0.15 -1.20 9.18 -39.32 -0.36 -1.56 16 6 C -0.08 -0.65 10.17 -39.31 -0.40 -1.04 16 7 C -0.12 -1.29 9.63 -39.05 -0.38 -1.67 16 8 C 0.09 1.16 6.75 -83.01 -0.56 0.60 16 9 C 0.57 8.83 7.81 -12.18 -0.10 8.73 16 10 O -0.54 -9.65 16.32 5.35 0.09 -9.57 16 11 N -0.70 -10.61 5.39 -61.14 -0.33 -10.93 16 12 C 0.13 2.13 4.99 -4.04 -0.02 2.11 16 13 C -0.10 -1.88 2.75 -88.78 -0.24 -2.13 16 14 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 15 C 0.14 2.93 6.52 -3.07 -0.02 2.91 16 16 N -0.60 -15.31 3.39 -170.08 -0.58 -15.89 16 17 C -0.22 -6.16 10.27 -15.06 -0.15 -6.31 16 18 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 19 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 20 N -0.92 -26.55 10.09 55.49 0.56 -26.00 16 21 Si 0.92 21.93 29.55 -169.99 -5.02 16.90 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 C 0.13 3.09 5.62 -2.53 -0.01 3.07 16 26 C 0.08 1.57 3.88 -24.58 -0.10 1.48 16 27 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 28 O -0.57 -9.96 13.47 -35.23 -0.47 -10.44 16 29 N -0.46 -5.69 9.45 -6.06 -0.06 -5.75 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.27 6.48 -51.93 -0.34 -0.07 16 37 H 0.14 0.72 6.30 -52.49 -0.33 0.39 16 38 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 39 H 0.15 1.52 7.64 -52.48 -0.40 1.12 16 40 H 0.41 5.90 7.66 -40.82 -0.31 5.59 16 41 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 42 H 0.07 1.21 8.06 -51.93 -0.42 0.79 16 43 H 0.03 0.60 7.77 -51.93 -0.40 0.19 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.11 2.89 5.87 -51.93 -0.30 2.58 16 47 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.38 5.12 9.12 45.56 0.42 5.54 16 LS Contribution 391.45 15.07 5.90 5.90 Total: -1.00 -33.07 391.45 -9.17 -42.25 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.71 Total: 8.80 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -2.55 Total: 4.72 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.40 Total: -58.57 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.39 Total: -20.00 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.07 -9.17 -42.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958223251.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.497 kcal (2) G-P(sol) polarization free energy of solvation -33.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds