Wall clock time and date at job start Tue Mar 31 2020 18:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46970 * 2 1 4 4 C 1.50699 * 109.46807 * 119.99843 * 2 1 3 5 5 C 1.38604 * 119.54745 * 274.99896 * 4 2 1 6 6 C 1.38589 * 119.34743 * 180.02562 * 5 4 2 7 7 C 1.38632 * 118.49168 * 359.97438 * 6 5 4 8 8 C 1.39275 * 119.05726 * 0.02562 * 7 6 5 9 9 C 1.48162 * 119.71836 * 179.97438 * 8 7 6 10 10 O 1.21521 * 120.00421 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00061 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00183 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47321 * 179.97438 * 12 11 9 14 14 H 1.08996 * 110.64128 * 303.31902 * 13 12 11 15 15 C 1.54325 * 110.71718 * 66.45279 * 13 12 11 16 16 N 1.47018 * 107.27099 * 140.73458 * 15 13 12 17 17 C 1.36941 * 125.65333 * 181.01921 * 16 15 13 18 18 H 1.08003 * 119.99654 * 10.75826 * 17 16 15 19 19 C 1.38811 * 120.00604 * 190.74952 * 17 16 15 20 20 N 1.31621 * 119.99472 * 9.07328 * 19 17 16 21 21 Si 1.86802 * 120.00075 * 189.06828 * 19 17 16 22 22 H 1.48497 * 109.46995 * 84.99393 * 21 19 17 23 23 H 1.48497 * 109.47222 * 324.99067 * 21 19 17 24 24 H 1.48502 * 109.46692 * 204.99429 * 21 19 17 25 25 C 1.47428 * 108.70261 * 1.29115 * 16 15 13 26 26 C 1.55124 * 104.71992 * 335.55012 * 25 16 15 27 27 H 1.09006 * 111.19065 * 279.19363 * 26 25 16 28 28 O 1.42905 * 110.93980 * 155.29276 * 26 25 16 29 29 N 1.31501 * 119.54931 * 95.29639 * 4 2 1 30 30 H 1.09000 * 109.47074 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47311 * 300.00673 * 1 2 3 32 32 H 1.09005 * 109.46955 * 60.00222 * 1 2 3 33 33 H 1.09005 * 109.46997 * 239.99796 * 2 1 3 34 34 H 1.09003 * 109.46791 * 179.97438 * 3 2 1 35 35 H 1.09005 * 109.47100 * 299.99689 * 3 2 1 36 36 H 1.09003 * 109.47327 * 59.99522 * 3 2 1 37 37 H 1.07997 * 120.32775 * 0.02562 * 5 4 2 38 38 H 1.08002 * 120.75411 * 180.02562 * 6 5 4 39 39 H 1.07995 * 120.46843 * 180.02562 * 7 6 5 40 40 H 0.96999 * 119.99502 * 359.97438 * 11 9 8 41 41 H 1.09003 * 109.47316 * 59.99576 * 12 11 9 42 42 H 1.09004 * 109.47201 * 299.99957 * 12 11 9 43 43 H 1.09003 * 109.88667 * 21.31809 * 15 13 12 44 44 H 1.09003 * 110.01476 * 260.22446 * 15 13 12 45 45 H 0.96997 * 119.99379 * 180.02562 * 20 19 17 46 46 H 1.08991 * 110.36854 * 94.48382 * 25 16 15 47 47 H 1.08999 * 110.36513 * 216.80406 * 25 16 15 48 48 H 0.96703 * 114.00004 * 67.95673 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1610 -0.0098 2.4195 6 6 2.6238 -0.6671 3.5484 7 6 2.9431 -2.0123 3.4462 8 6 2.7890 -2.6527 2.2191 9 6 3.1263 -4.0899 2.0932 10 8 3.5360 -4.7047 3.0581 11 7 2.9799 -4.7153 0.9083 12 6 3.3140 -6.1361 0.7837 13 6 3.0587 -6.5960 -0.6531 14 1 2.0257 -6.4011 -0.9411 15 6 4.0366 -5.9076 -1.6285 16 7 4.4372 -6.9110 -2.6256 17 6 5.3139 -6.7053 -3.6573 18 1 5.9058 -5.8025 -3.6910 19 6 5.4421 -7.6570 -4.6596 20 7 4.6008 -8.6676 -4.7188 21 14 6.8082 -7.5035 -5.9243 22 1 8.0519 -8.1100 -5.3856 23 1 7.0466 -6.0687 -6.2237 24 1 6.4119 -8.2097 -7.1691 25 6 3.7337 -8.1735 -2.3348 26 6 3.4011 -8.0999 -0.8214 27 1 4.2640 -8.3744 -0.2145 28 8 2.2744 -8.9202 -0.5056 29 7 2.3480 -1.9850 1.1600 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6766 1.9564 0.8900 37 1 1.9032 1.0379 2.4658 38 1 2.7325 -0.1434 4.4867 39 1 3.3061 -2.5558 4.3060 40 1 2.6532 -4.2244 0.1381 41 1 2.6933 -6.7166 1.4663 42 1 4.3647 -6.2855 1.0321 43 1 4.9133 -5.5533 -1.0862 44 1 3.5433 -5.0705 -2.1226 45 1 4.6906 -9.3329 -5.4190 46 1 2.8192 -8.2426 -2.9237 47 1 4.3827 -9.0251 -2.5391 48 1 2.4406 -9.8685 -0.5962 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958223253.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:17 Heat of formation + Delta-G solvation = -34.794590 kcal Electronic energy + Delta-G solvation = -28437.711383 eV Core-core repulsion = 24492.893416 eV Total energy + Delta-G solvation = -3944.817968 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.93385 -39.31155 -38.13849 -35.82832 -35.18378 -34.65318 -32.99717 -32.11073 -30.68306 -29.61468 -27.63180 -27.47894 -25.84158 -24.66507 -24.17047 -23.20739 -21.34933 -20.58977 -20.07115 -19.65631 -17.95164 -17.16191 -16.93589 -16.73274 -16.14269 -15.58969 -15.42804 -15.09192 -14.96637 -14.66681 -14.28047 -14.11147 -13.95238 -13.79722 -13.36558 -13.14166 -12.96316 -12.81679 -12.61040 -12.41506 -12.29638 -11.92500 -11.75579 -11.62099 -11.50383 -11.23274 -11.16176 -10.98140 -10.79435 -10.62453 -10.36027 -10.20901 -10.05748 -9.88665 -9.78901 -9.63839 -9.29787 -9.19472 -8.89723 -8.63443 -6.86028 -5.78873 -3.13071 0.43982 0.93703 2.66519 3.10646 3.38096 3.43248 3.44859 3.66760 3.75352 4.28072 4.42446 4.54322 4.65831 4.71110 4.72040 4.78645 4.87095 4.96136 5.04626 5.16789 5.26154 5.29846 5.39134 5.44139 5.47905 5.49485 5.56040 5.63479 5.68308 5.73572 5.84131 5.90652 5.92477 5.97315 6.03708 6.05229 6.21580 6.30631 6.37924 6.50635 6.63456 6.84126 7.32519 7.41177 7.50315 7.69849 7.71385 8.13635 8.20734 8.22899 9.13747 9.75415 10.41767 11.33849 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011790 B = 0.002778 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.274616 B =10077.422955 C =11440.772604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.049 4.049 3 C -0.148 4.148 4 C 0.137 3.863 5 C -0.151 4.151 6 C -0.080 4.080 7 C -0.119 4.119 8 C 0.088 3.912 9 C 0.568 3.432 10 O -0.539 6.539 11 N -0.701 5.701 12 C 0.131 3.869 13 C -0.104 4.104 14 H 0.088 0.912 15 C 0.141 3.859 16 N -0.600 5.600 17 C -0.231 4.231 18 H 0.078 0.922 19 C -0.006 4.006 20 N -0.918 5.918 21 Si 0.913 3.087 22 H -0.288 1.288 23 H -0.281 1.281 24 H -0.290 1.290 25 C 0.150 3.850 26 C 0.080 3.920 27 H 0.061 0.939 28 O -0.568 6.568 29 N -0.455 5.455 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.148 0.852 40 H 0.412 0.588 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.029 0.971 44 H 0.027 0.973 45 H 0.254 0.746 46 H 0.037 0.963 47 H 0.071 0.929 48 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.561 17.101 14.583 23.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.068 4.068 3 C -0.205 4.205 4 C -0.004 4.004 5 C -0.171 4.171 6 C -0.106 4.106 7 C -0.140 4.140 8 C -0.051 4.051 9 C 0.352 3.648 10 O -0.416 6.416 11 N -0.352 5.352 12 C 0.008 3.992 13 C -0.123 4.123 14 H 0.106 0.894 15 C 0.015 3.985 16 N -0.327 5.327 17 C -0.359 4.359 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.565 5.565 21 Si 0.743 3.257 22 H -0.215 1.215 23 H -0.206 1.206 24 H -0.217 1.217 25 C 0.025 3.975 26 C 0.020 3.980 27 H 0.079 0.921 28 O -0.372 6.372 29 N -0.167 5.167 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.166 0.834 40 H 0.249 0.751 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.046 0.954 44 H 0.045 0.955 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.089 0.911 48 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -7.546 16.623 14.385 23.242 hybrid contribution 0.902 0.203 -0.408 1.011 sum -6.643 16.826 13.977 22.860 Atomic orbital electron populations 1.21807 0.93403 1.02599 1.02115 1.20101 0.96336 0.95421 0.94967 1.21932 1.01489 0.94740 1.02359 1.21265 0.94692 0.89348 0.95067 1.22207 0.99946 1.01681 0.93252 1.21618 0.95933 0.93997 0.99061 1.22122 0.98247 0.95053 0.98574 1.21180 0.98983 0.94612 0.90297 1.17861 0.78336 0.85155 0.83452 1.90778 1.46538 1.66164 1.38085 1.45896 1.65385 1.11829 1.12064 1.21491 1.01148 0.79681 0.96870 1.22375 1.01250 0.95302 0.93355 0.89412 1.21374 0.94392 0.92638 0.90113 1.44302 1.51000 1.06612 1.30789 1.19028 1.13226 1.04732 0.98949 0.90455 1.24850 0.99095 0.98229 0.98131 1.69943 1.36736 1.14820 1.35019 0.86126 0.81458 0.77504 0.80607 1.21468 1.20628 1.21666 1.22047 0.96817 0.90687 0.87982 1.23331 0.87094 0.88849 0.98771 0.92100 1.86389 1.38414 1.20904 1.91518 1.67380 1.09477 1.09101 1.30738 0.92076 0.92626 0.91650 0.88667 0.92232 0.91575 0.92260 0.84190 0.84084 0.83444 0.75123 0.90945 0.91056 0.95358 0.95538 0.93606 0.94484 0.91082 0.77682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.18 37.16 0.34 -0.67 16 2 C -0.05 -0.40 3.23 -91.77 -0.30 -0.69 16 3 C -0.15 -0.88 8.62 37.16 0.32 -0.56 16 4 C 0.14 1.37 5.79 -82.60 -0.48 0.89 16 5 C -0.15 -1.20 9.18 -39.32 -0.36 -1.56 16 6 C -0.08 -0.65 10.17 -39.31 -0.40 -1.04 16 7 C -0.12 -1.29 9.63 -39.05 -0.38 -1.66 16 8 C 0.09 1.16 6.75 -83.01 -0.56 0.60 16 9 C 0.57 8.78 7.81 -12.18 -0.10 8.69 16 10 O -0.54 -9.60 16.32 5.35 0.09 -9.51 16 11 N -0.70 -10.55 5.39 -61.15 -0.33 -10.88 16 12 C 0.13 2.11 5.01 -4.04 -0.02 2.09 16 13 C -0.10 -1.85 2.74 -88.79 -0.24 -2.10 16 14 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 15 C 0.14 2.92 6.52 -3.07 -0.02 2.90 16 16 N -0.60 -15.25 3.39 -169.94 -0.58 -15.83 16 17 C -0.23 -6.42 10.24 -15.06 -0.15 -6.58 16 18 H 0.08 2.08 7.85 -52.48 -0.41 1.67 16 19 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 20 N -0.92 -26.70 10.68 55.49 0.59 -26.10 16 21 Si 0.91 21.93 29.56 -169.99 -5.03 16.91 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 C 0.15 3.59 5.16 -2.41 -0.01 3.58 16 26 C 0.08 1.51 3.89 -24.47 -0.10 1.42 16 27 H 0.06 1.11 8.05 -51.93 -0.42 0.69 16 28 O -0.57 -9.80 13.47 -35.23 -0.47 -10.27 16 29 N -0.46 -5.70 9.45 -6.06 -0.06 -5.75 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.28 6.49 -51.93 -0.34 -0.06 16 37 H 0.14 0.72 6.30 -52.49 -0.33 0.39 16 38 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 39 H 0.15 1.51 7.64 -52.49 -0.40 1.11 16 40 H 0.41 5.90 7.66 -40.82 -0.31 5.59 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 43 H 0.03 0.59 7.77 -51.93 -0.40 0.18 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 47 H 0.07 1.85 6.95 -51.93 -0.36 1.49 16 48 H 0.38 5.00 9.12 45.56 0.42 5.41 16 LS Contribution 392.50 15.07 5.91 5.91 Total: -1.00 -33.37 392.50 -9.17 -42.54 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -6.76 Total: 7.96 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -2.55 Total: 5.02 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: -0.37 Total: -58.56 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.39 Total: -19.78 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.37 -9.17 -42.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958223253.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.746 kcal (2) G-P(sol) polarization free energy of solvation -33.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds