Wall clock time and date at job start Tue Mar 31 2020 18:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46970 * 2 1 4 4 C 1.50699 * 109.46807 * 119.99843 * 2 1 3 5 5 C 1.38604 * 119.54745 * 274.99896 * 4 2 1 6 6 C 1.38589 * 119.34743 * 180.02562 * 5 4 2 7 7 C 1.38632 * 118.49168 * 359.97438 * 6 5 4 8 8 C 1.39275 * 119.05726 * 0.02562 * 7 6 5 9 9 C 1.48162 * 119.71836 * 179.97438 * 8 7 6 10 10 O 1.21521 * 120.00421 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00061 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00183 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47321 * 179.97438 * 12 11 9 14 14 H 1.08996 * 110.64128 * 303.31902 * 13 12 11 15 15 C 1.54325 * 110.71718 * 66.45279 * 13 12 11 16 16 N 1.47018 * 107.27099 * 140.73458 * 15 13 12 17 17 C 1.36941 * 125.65333 * 181.01921 * 16 15 13 18 18 H 1.08003 * 119.99654 * 10.75826 * 17 16 15 19 19 C 1.38811 * 120.00604 * 190.74952 * 17 16 15 20 20 N 1.31621 * 119.99472 * 9.07328 * 19 17 16 21 21 Si 1.86802 * 120.00075 * 189.06828 * 19 17 16 22 22 H 1.48497 * 109.46995 * 84.99393 * 21 19 17 23 23 H 1.48497 * 109.47222 * 324.99067 * 21 19 17 24 24 H 1.48502 * 109.46692 * 204.99429 * 21 19 17 25 25 C 1.47428 * 108.70261 * 1.29115 * 16 15 13 26 26 C 1.55124 * 104.71992 * 335.55012 * 25 16 15 27 27 H 1.09006 * 111.19065 * 279.19363 * 26 25 16 28 28 O 1.42905 * 110.93980 * 155.29276 * 26 25 16 29 29 N 1.31501 * 119.54931 * 95.29639 * 4 2 1 30 30 H 1.09000 * 109.47074 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47311 * 300.00673 * 1 2 3 32 32 H 1.09005 * 109.46955 * 60.00222 * 1 2 3 33 33 H 1.09005 * 109.46997 * 239.99796 * 2 1 3 34 34 H 1.09003 * 109.46791 * 179.97438 * 3 2 1 35 35 H 1.09005 * 109.47100 * 299.99689 * 3 2 1 36 36 H 1.09003 * 109.47327 * 59.99522 * 3 2 1 37 37 H 1.07997 * 120.32775 * 0.02562 * 5 4 2 38 38 H 1.08002 * 120.75411 * 180.02562 * 6 5 4 39 39 H 1.07995 * 120.46843 * 180.02562 * 7 6 5 40 40 H 0.96999 * 119.99502 * 359.97438 * 11 9 8 41 41 H 1.09003 * 109.47316 * 59.99576 * 12 11 9 42 42 H 1.09004 * 109.47201 * 299.99957 * 12 11 9 43 43 H 1.09003 * 109.88667 * 21.31809 * 15 13 12 44 44 H 1.09003 * 110.01476 * 260.22446 * 15 13 12 45 45 H 0.96997 * 119.99379 * 180.02562 * 20 19 17 46 46 H 1.08991 * 110.36854 * 94.48382 * 25 16 15 47 47 H 1.08999 * 110.36513 * 216.80406 * 25 16 15 48 48 H 0.96703 * 114.00004 * 67.95673 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1610 -0.0098 2.4195 6 6 2.6238 -0.6671 3.5484 7 6 2.9431 -2.0123 3.4462 8 6 2.7890 -2.6527 2.2191 9 6 3.1263 -4.0899 2.0932 10 8 3.5360 -4.7047 3.0581 11 7 2.9799 -4.7153 0.9083 12 6 3.3140 -6.1361 0.7837 13 6 3.0587 -6.5960 -0.6531 14 1 2.0257 -6.4011 -0.9411 15 6 4.0366 -5.9076 -1.6285 16 7 4.4372 -6.9110 -2.6256 17 6 5.3139 -6.7053 -3.6573 18 1 5.9058 -5.8025 -3.6910 19 6 5.4421 -7.6570 -4.6596 20 7 4.6008 -8.6676 -4.7188 21 14 6.8082 -7.5035 -5.9243 22 1 8.0519 -8.1100 -5.3856 23 1 7.0466 -6.0687 -6.2237 24 1 6.4119 -8.2097 -7.1691 25 6 3.7337 -8.1735 -2.3348 26 6 3.4011 -8.0999 -0.8214 27 1 4.2640 -8.3744 -0.2145 28 8 2.2744 -8.9202 -0.5056 29 7 2.3480 -1.9850 1.1600 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6766 1.9564 0.8900 37 1 1.9032 1.0379 2.4658 38 1 2.7325 -0.1434 4.4867 39 1 3.3061 -2.5558 4.3060 40 1 2.6532 -4.2244 0.1381 41 1 2.6933 -6.7166 1.4663 42 1 4.3647 -6.2855 1.0321 43 1 4.9133 -5.5533 -1.0862 44 1 3.5433 -5.0705 -2.1226 45 1 4.6906 -9.3329 -5.4190 46 1 2.8192 -8.2426 -2.9237 47 1 4.3827 -9.0251 -2.5391 48 1 2.4406 -9.8685 -0.5962 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958223253.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:16 Heat of formation + Delta-G solvation = -59.219938 kcal Electronic energy + Delta-G solvation = -28438.770546 eV Core-core repulsion = 24492.893416 eV Total energy + Delta-G solvation = -3945.877130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.80400 -40.51686 -39.66711 -36.69861 -36.48351 -36.17746 -34.19258 -33.54327 -31.72889 -31.06655 -29.31939 -28.06878 -27.43913 -25.99168 -24.87046 -24.58220 -22.57405 -21.96225 -21.46360 -20.88201 -19.13849 -18.76338 -18.31477 -17.85116 -17.15857 -16.85781 -16.69925 -16.56076 -15.90220 -15.85833 -15.66558 -15.23056 -15.03332 -14.82928 -14.74894 -14.38504 -14.17049 -14.04768 -13.68279 -13.63041 -13.35918 -13.26297 -13.07855 -12.80021 -12.78306 -12.44177 -12.44000 -12.35084 -12.06290 -11.95236 -11.87865 -11.79744 -11.58615 -11.30627 -10.93309 -10.86154 -10.72406 -10.49727 -10.28062 -9.96414 -8.92492 -7.91636 -5.28634 -0.38887 0.22792 1.45622 1.47801 1.55954 1.64311 1.97503 2.46140 2.80333 2.92719 3.16144 3.27205 3.53570 3.58167 3.69877 3.82834 3.86748 4.00586 4.04967 4.06652 4.17464 4.29945 4.32803 4.37318 4.42030 4.46178 4.54557 4.67813 4.75950 4.83802 4.84455 4.91941 4.97978 4.98803 5.02488 5.11894 5.20335 5.25662 5.28299 5.36040 5.38730 5.43215 5.46093 5.62315 5.63379 6.13847 6.32180 6.78276 6.86953 7.03106 7.04851 7.69140 8.35011 9.19697 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011790 B = 0.002778 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.274616 B =10077.422955 C =11440.772604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 C -0.143 4.143 4 C 0.122 3.878 5 C -0.137 4.137 6 C -0.071 4.071 7 C -0.125 4.125 8 C 0.057 3.943 9 C 0.566 3.434 10 O -0.569 6.569 11 N -0.700 5.700 12 C 0.145 3.855 13 C -0.088 4.088 14 H 0.088 0.912 15 C 0.142 3.858 16 N -0.621 5.621 17 C -0.249 4.249 18 H 0.080 0.920 19 C -0.060 4.060 20 N -0.947 5.947 21 Si 0.980 3.020 22 H -0.283 1.283 23 H -0.269 1.269 24 H -0.293 1.293 25 C 0.158 3.842 26 C 0.098 3.902 27 H 0.075 0.925 28 O -0.568 6.568 29 N -0.480 5.480 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.177 0.823 38 H 0.181 0.819 39 H 0.148 0.852 40 H 0.415 0.585 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.033 0.967 44 H 0.028 0.972 45 H 0.250 0.750 46 H 0.003 0.997 47 H 0.042 0.958 48 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.745 19.883 16.031 26.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.069 4.069 3 C -0.201 4.201 4 C -0.019 4.019 5 C -0.156 4.156 6 C -0.096 4.096 7 C -0.146 4.146 8 C -0.080 4.080 9 C 0.352 3.648 10 O -0.448 6.448 11 N -0.351 5.351 12 C 0.021 3.979 13 C -0.107 4.107 14 H 0.106 0.894 15 C 0.016 3.984 16 N -0.349 5.349 17 C -0.377 4.377 18 H 0.098 0.902 19 C -0.254 4.254 20 N -0.595 5.595 21 Si 0.808 3.192 22 H -0.210 1.210 23 H -0.194 1.194 24 H -0.220 1.220 25 C 0.032 3.968 26 C 0.038 3.962 27 H 0.093 0.907 28 O -0.375 6.375 29 N -0.192 5.192 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.194 0.806 38 H 0.198 0.802 39 H 0.165 0.835 40 H 0.252 0.748 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.051 0.949 44 H 0.046 0.954 45 H 0.059 0.941 46 H 0.021 0.979 47 H 0.061 0.939 48 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -7.738 19.412 15.846 26.226 hybrid contribution 0.900 -0.583 -0.855 1.371 sum -6.838 18.830 14.992 25.021 Atomic orbital electron populations 1.21786 0.92688 1.01694 1.03395 1.20153 0.96871 0.96424 0.93440 1.21918 1.01057 0.93232 1.03854 1.21727 0.94642 0.88775 0.96740 1.22620 0.97790 1.03114 0.92071 1.22052 0.94209 0.92693 1.00689 1.22278 0.98244 0.96485 0.97588 1.20920 1.01801 0.93538 0.91738 1.18277 0.77419 0.86287 0.82788 1.90743 1.48025 1.67203 1.38860 1.45846 1.65435 1.11376 1.12397 1.21252 1.00950 0.80481 0.95225 1.22198 1.00361 0.94312 0.93820 0.89394 1.21464 0.95152 0.92025 0.89715 1.44590 1.50916 1.08275 1.31087 1.19400 1.13744 1.04875 0.99707 0.90172 1.25691 1.01387 0.98076 1.00267 1.70138 1.38277 1.15472 1.35588 0.85081 0.78506 0.77857 0.77792 1.21002 1.19424 1.21974 1.21841 0.94463 0.89421 0.91066 1.23006 0.88150 0.89887 0.95193 0.90720 1.86362 1.37651 1.22447 1.91009 1.67286 1.10366 1.10580 1.30955 0.94066 0.91171 0.90528 0.90694 0.92870 0.90720 0.90173 0.80603 0.80202 0.83468 0.74784 0.90577 0.91469 0.94898 0.95447 0.94104 0.97862 0.93912 0.75523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.18 71.98 0.66 -1.08 16 2 C -0.05 -0.73 3.23 -11.54 -0.04 -0.77 16 3 C -0.14 -1.32 8.62 71.98 0.62 -0.70 16 4 C 0.12 2.25 5.79 42.70 0.25 2.50 16 5 C -0.14 -1.69 9.18 22.44 0.21 -1.49 16 6 C -0.07 -0.91 10.17 22.45 0.23 -0.68 16 7 C -0.12 -2.54 9.63 22.61 0.22 -2.33 16 8 C 0.06 1.50 6.75 41.89 0.28 1.78 16 9 C 0.57 17.75 7.81 86.88 0.68 18.43 16 10 O -0.57 -20.53 16.32 -3.78 -0.06 -20.59 16 11 N -0.70 -21.26 5.39 -465.66 -2.51 -23.77 16 12 C 0.14 4.59 5.01 86.38 0.43 5.03 16 13 C -0.09 -3.13 2.74 -9.61 -0.03 -3.15 16 14 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 15 C 0.14 5.93 6.52 86.73 0.57 6.50 16 16 N -0.62 -32.32 3.39 -691.56 -2.35 -34.67 16 17 C -0.25 -14.05 10.24 84.03 0.86 -13.19 16 18 H 0.08 4.36 7.85 -2.91 -0.02 4.34 16 19 C -0.06 -3.44 5.40 84.86 0.46 -2.98 16 20 N -0.95 -56.66 10.68 21.65 0.23 -56.43 16 21 Si 0.98 45.62 29.56 68.60 2.03 47.65 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 25 C 0.16 7.78 5.16 86.93 0.45 8.23 16 26 C 0.10 3.72 3.89 32.06 0.12 3.84 16 27 H 0.07 2.67 8.05 -2.38 -0.02 2.65 16 28 O -0.57 -19.12 13.47 -148.98 -2.01 -21.13 16 29 N -0.48 -11.91 9.45 -173.08 -1.64 -13.55 16 30 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.08 0.40 6.49 -2.39 -0.02 0.38 16 37 H 0.18 0.88 6.30 -2.91 -0.02 0.86 16 38 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16 39 H 0.15 2.92 7.64 -2.91 -0.02 2.90 16 40 H 0.42 12.11 7.66 -92.71 -0.71 11.40 16 41 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.07 2.21 8.06 -2.39 -0.02 2.19 16 43 H 0.03 1.36 7.77 -2.39 -0.02 1.34 16 44 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 46 H 0.00 0.19 8.07 -2.39 -0.02 0.17 16 47 H 0.04 2.32 6.95 -2.39 -0.02 2.30 16 48 H 0.40 10.10 9.12 -74.05 -0.68 9.43 16 Total: -1.00 -74.50 392.50 -0.74 -75.24 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: -0.41 Total: 27.30 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 5.97 Total: 19.94 kcal Atomic # 7 Polarization: -122.15 SS G_CDS: -6.26 Total: -128.41 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -2.07 Total: -41.72 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -74.50 -0.74 -75.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958223253.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.022 kcal (2) G-P(sol) polarization free energy of solvation -74.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds