Wall clock time and date at job start Tue Mar 31 2020 17:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47160 * 2 1 4 4 C 1.38352 * 120.27142 * 89.99886 * 3 2 1 5 5 N 1.31884 * 121.18467 * 180.23743 * 4 3 2 6 6 C 1.32236 * 121.79969 * 359.47596 * 5 4 3 7 7 O 1.35428 * 119.80057 * 180.25022 * 6 5 4 8 8 C 1.40279 * 120.39819 * 0.51994 * 6 5 4 9 9 C 1.47527 * 120.59377 * 179.72780 * 8 6 5 10 10 O 1.21590 * 120.00498 * 0.02562 * 9 8 6 11 11 N 1.34774 * 119.99996 * 180.02562 * 9 8 6 12 12 C 1.46498 * 120.00281 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.49414 * 325.06003 * 12 11 9 14 14 C 1.53189 * 109.50049 * 85.15908 * 12 11 9 15 15 N 1.46927 * 108.77615 * 174.58919 * 14 12 11 16 16 C 1.36939 * 120.63286 * 126.41306 * 15 14 12 17 17 H 1.08001 * 120.00202 * 207.66240 * 16 15 14 18 18 C 1.38811 * 119.99864 * 27.66453 * 16 15 14 19 19 N 1.31620 * 119.99797 * 17.36425 * 18 16 15 20 20 Si 1.86795 * 119.99956 * 197.36956 * 18 16 15 21 21 H 1.48501 * 109.47252 * 89.99908 * 20 18 16 22 22 H 1.48498 * 109.47215 * 209.99659 * 20 18 16 23 23 H 1.48504 * 109.47220 * 329.99702 * 20 18 16 24 24 C 1.46934 * 118.73957 * 306.39082 * 15 14 12 25 25 C 1.53195 * 108.77164 * 53.61019 * 24 15 14 26 26 C 1.53039 * 109.31279 * 305.36408 * 25 24 15 27 27 H 1.09000 * 109.45202 * 301.35482 * 26 25 24 28 28 C 1.53004 * 109.46154 * 181.39057 * 26 25 24 29 29 C 1.38339 * 120.27127 * 269.98292 * 3 2 1 30 30 H 1.09001 * 109.47374 * 299.99727 * 1 2 3 31 31 H 1.09000 * 109.47249 * 60.00090 * 1 2 3 32 32 H 1.09006 * 109.47162 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47374 * 240.00273 * 2 1 3 34 34 H 1.09000 * 109.47249 * 119.99910 * 2 1 3 35 35 H 1.07997 * 119.40672 * 359.95553 * 4 3 2 36 36 H 0.96702 * 113.99484 * 270.27017 * 7 6 5 37 37 H 0.97004 * 120.00079 * 0.02562 * 11 9 8 38 38 H 1.08996 * 109.58593 * 294.37630 * 14 12 11 39 39 H 1.09000 * 109.58840 * 54.80216 * 14 12 11 40 40 H 0.97005 * 119.99756 * 180.02562 * 19 18 16 41 41 H 1.08994 * 109.58478 * 293.82670 * 24 15 14 42 42 H 1.08994 * 109.70229 * 173.46151 * 24 15 14 43 43 H 1.09003 * 109.49212 * 185.41554 * 25 24 15 44 44 H 1.08996 * 109.50145 * 65.31805 * 25 24 15 45 45 H 1.09002 * 109.46735 * 299.93066 * 28 26 25 46 46 H 1.08996 * 109.47103 * 59.93083 * 28 26 25 47 47 H 1.08998 * 109.47058 * 179.97438 * 28 26 25 48 48 H 1.08007 * 120.82500 * 0.03580 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2648 2.0783 1.1949 5 7 2.6999 3.3231 1.2159 6 6 2.9433 3.9951 0.1033 7 8 3.3941 5.2703 0.1722 8 6 2.7318 3.3970 -1.1478 9 6 2.9962 4.1447 -2.3918 10 8 3.4015 5.2898 -2.3385 11 7 2.7885 3.5585 -3.5875 12 6 3.0515 4.3008 -4.8228 13 1 2.7994 5.3512 -4.6767 14 6 4.5339 4.1761 -5.1885 15 7 4.7543 4.8143 -6.4934 16 6 5.7145 5.7789 -6.6451 17 1 5.6022 6.5378 -7.4053 18 6 6.8321 5.7812 -5.8218 19 7 7.1509 4.7001 -5.1422 20 14 7.8833 7.3186 -5.6784 21 1 7.3729 8.1657 -4.5706 22 1 9.2896 6.9323 -5.3986 23 1 7.8231 8.0800 -6.9520 24 6 3.9253 4.3976 -7.6328 25 6 2.4497 4.5199 -7.2396 26 6 2.2002 3.7242 -5.9564 27 1 2.4700 2.6805 -6.1182 28 6 0.7201 3.8155 -5.5796 29 6 2.2651 2.0781 -1.1948 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0823 1.5645 2.1271 36 1 2.6921 5.9351 0.1921 37 1 2.4647 2.6451 -3.6301 38 1 5.1400 4.6735 -4.4314 39 1 4.8088 3.1229 -5.2458 40 1 7.9317 4.7018 -4.5666 41 1 4.1505 3.3625 -7.8892 42 1 4.1294 5.0393 -8.4898 43 1 1.8258 4.1235 -8.0407 44 1 2.2037 5.5683 -7.0712 45 1 0.4503 4.8590 -5.4172 46 1 0.1137 3.4048 -6.3868 47 1 0.5422 3.2484 -4.6659 48 1 2.0908 1.5861 -2.1403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968480621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:51 Heat of formation + Delta-G solvation = -28.428053 kcal Electronic energy + Delta-G solvation = -29687.985533 eV Core-core repulsion = 25743.443640 eV Total energy + Delta-G solvation = -3944.541894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.93642 -39.24491 -37.64857 -37.17088 -34.47766 -34.34898 -33.29853 -32.27395 -30.94501 -29.37886 -28.72496 -27.34947 -24.92623 -24.22438 -24.03837 -22.75197 -21.62799 -20.99907 -20.09722 -19.40367 -18.81958 -17.30831 -17.20766 -16.75028 -16.07087 -15.34531 -14.93512 -14.87076 -14.52741 -14.23431 -14.15794 -13.86862 -13.74425 -13.58536 -13.44563 -13.27705 -13.02393 -12.78787 -12.44956 -12.39960 -12.03705 -11.94427 -11.67184 -11.60760 -11.57838 -11.34529 -10.88131 -10.69819 -10.65650 -10.45595 -10.15491 -10.04451 -9.99047 -9.90584 -9.82065 -9.51274 -9.25117 -8.91833 -8.52230 -8.39855 -6.64563 -5.73004 -3.16475 0.51516 0.91225 2.98825 3.35082 3.46424 3.52718 3.53429 3.54420 3.80971 4.30783 4.46931 4.55132 4.57549 4.59254 4.93461 4.98871 5.03541 5.13723 5.22630 5.27292 5.38171 5.41088 5.50368 5.51489 5.56813 5.59993 5.66288 5.83791 5.88163 5.95106 5.96678 6.01017 6.09575 6.20279 6.25644 6.37375 6.44326 6.51000 6.71492 6.74919 6.91738 6.96085 7.29150 7.49783 7.73452 7.74425 7.84074 7.89789 8.49793 8.59204 9.25238 9.89321 10.43637 11.34931 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.003796 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.286934 B = 7373.750534 C = 8834.726159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.156 4.156 4 C 0.144 3.856 5 N -0.506 5.506 6 C 0.363 3.637 7 O -0.456 6.456 8 C -0.189 4.189 9 C 0.555 3.445 10 O -0.508 6.508 11 N -0.713 5.713 12 C 0.125 3.875 13 H 0.084 0.916 14 C 0.166 3.834 15 N -0.588 5.588 16 C -0.258 4.258 17 H 0.067 0.933 18 C 0.008 3.992 19 N -0.898 5.898 20 Si 0.902 3.098 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.142 3.858 25 C -0.125 4.125 26 C -0.092 4.092 27 H 0.066 0.934 28 C -0.144 4.144 29 C -0.030 4.030 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.161 0.839 36 H 0.403 0.597 37 H 0.389 0.611 38 H 0.096 0.904 39 H 0.016 0.984 40 H 0.254 0.746 41 H 0.017 0.983 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.050 0.950 47 H 0.047 0.953 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.140 -10.709 8.575 21.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 C -0.158 4.158 4 C -0.014 4.014 5 N -0.224 5.224 6 C 0.183 3.817 7 O -0.263 6.263 8 C -0.196 4.196 9 C 0.340 3.660 10 O -0.383 6.383 11 N -0.364 5.364 12 C 0.020 3.980 13 H 0.102 0.898 14 C 0.039 3.961 15 N -0.310 5.310 16 C -0.388 4.388 17 H 0.084 0.916 18 C -0.191 4.191 19 N -0.542 5.542 20 Si 0.732 3.268 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.016 3.984 25 C -0.165 4.165 26 C -0.111 4.111 27 H 0.085 0.915 28 C -0.201 4.201 29 C -0.056 4.056 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.178 0.822 36 H 0.263 0.737 37 H 0.222 0.778 38 H 0.114 0.886 39 H 0.034 0.966 40 H 0.064 0.936 41 H 0.035 0.965 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.955 -9.618 9.435 20.883 hybrid contribution -0.051 0.040 -0.595 0.599 sum -16.006 -9.578 8.840 20.641 Atomic orbital electron populations 1.21782 0.94475 1.02016 1.02342 1.20459 0.96242 0.91255 1.03629 1.20821 1.02947 0.98347 0.93699 1.22582 0.92201 0.88903 0.97731 1.67328 1.13720 1.09821 1.31552 1.19213 0.88899 0.87293 0.86302 1.84772 1.34798 1.11506 1.95261 1.21327 1.06360 0.96593 0.95326 1.17729 0.78837 0.86616 0.82818 1.90866 1.43572 1.17185 1.86709 1.45961 1.67605 1.16962 1.05913 1.22029 0.99326 0.95910 0.80701 0.89834 1.21101 0.89493 0.96159 0.89324 1.43960 1.39227 1.44881 1.02976 1.19143 0.97549 1.03547 1.18537 0.91574 1.25026 0.96509 0.96858 1.00753 1.70009 1.26938 1.25760 1.31476 0.86305 0.79355 0.83105 0.78082 1.21180 1.21788 1.20441 1.20955 0.88877 0.97248 0.91344 1.22069 0.99234 0.99827 0.95351 1.21312 0.94076 0.99968 0.95791 0.91528 1.21849 0.96267 1.01620 1.00368 1.21617 0.92903 0.92241 0.98806 0.92474 0.92460 0.92079 0.90437 0.90401 0.82152 0.73734 0.77752 0.88605 0.96583 0.93624 0.96480 0.92595 0.92609 0.92074 0.92902 0.93091 0.93390 0.84175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.89 37.16 0.37 -0.43 16 2 C -0.08 -0.47 6.08 -27.89 -0.17 -0.64 16 3 C -0.16 -1.43 5.14 -104.54 -0.54 -1.96 16 4 C 0.14 1.47 10.84 -17.49 -0.19 1.28 16 5 N -0.51 -6.94 10.37 -12.98 -0.13 -7.07 16 6 C 0.36 5.57 7.77 -16.61 -0.13 5.44 16 7 O -0.46 -7.43 11.66 -39.75 -0.46 -7.90 16 8 C -0.19 -2.77 5.90 -104.69 -0.62 -3.39 16 9 C 0.56 9.94 7.74 -12.47 -0.10 9.84 16 10 O -0.51 -11.33 14.85 -16.48 -0.24 -11.58 16 11 N -0.71 -11.44 4.32 -54.73 -0.24 -11.68 16 12 C 0.13 2.40 2.07 -67.81 -0.14 2.26 16 13 H 0.08 1.83 7.58 -51.93 -0.39 1.44 16 14 C 0.17 4.06 4.89 -3.71 -0.02 4.04 16 15 N -0.59 -14.93 3.00 -172.32 -0.52 -15.44 16 16 C -0.26 -7.30 9.59 -15.06 -0.14 -7.45 16 17 H 0.07 1.83 7.89 -52.49 -0.41 1.41 16 18 C 0.01 0.23 4.91 -17.43 -0.09 0.14 16 19 N -0.90 -27.23 11.19 55.49 0.62 -26.61 16 20 Si 0.90 22.92 29.59 -169.99 -5.03 17.89 16 21 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.14 2.92 6.51 -3.70 -0.02 2.90 16 25 C -0.13 -2.07 5.36 -26.61 -0.14 -2.21 16 26 C -0.09 -1.43 2.27 -90.58 -0.21 -1.64 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 C -0.14 -1.78 9.02 37.16 0.34 -1.45 16 29 C -0.03 -0.32 9.31 -38.89 -0.36 -0.68 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 34 H 0.08 0.38 8.09 -51.93 -0.42 -0.04 16 35 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.40 4.74 9.06 45.56 0.41 5.15 16 37 H 0.39 4.85 6.41 -40.82 -0.26 4.59 16 38 H 0.10 2.80 6.04 -51.93 -0.31 2.48 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.05 0.53 7.36 -51.93 -0.38 0.15 16 48 H 0.14 1.16 6.52 -52.48 -0.34 0.82 16 LS Contribution 386.34 15.07 5.82 5.82 Total: -1.00 -35.77 386.34 -9.07 -44.84 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -6.73 Total: 5.68 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -2.16 Total: 6.04 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -0.27 Total: -60.80 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.71 Total: -19.47 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.03 Total: 17.89 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.77 -9.07 -44.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968480621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.414 kcal (2) G-P(sol) polarization free energy of solvation -35.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds