Wall clock time and date at job start Tue Mar 31 2020 17:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47160 * 2 1 4 4 C 1.38352 * 120.27142 * 89.99886 * 3 2 1 5 5 N 1.31884 * 121.18467 * 180.23743 * 4 3 2 6 6 C 1.32236 * 121.79969 * 359.47596 * 5 4 3 7 7 O 1.35428 * 119.80057 * 180.25022 * 6 5 4 8 8 C 1.40279 * 120.39819 * 0.51994 * 6 5 4 9 9 C 1.47527 * 120.59377 * 179.72780 * 8 6 5 10 10 O 1.21590 * 120.00498 * 0.02562 * 9 8 6 11 11 N 1.34774 * 119.99996 * 180.02562 * 9 8 6 12 12 C 1.46498 * 120.00281 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.49414 * 325.06003 * 12 11 9 14 14 C 1.53189 * 109.50049 * 85.15908 * 12 11 9 15 15 N 1.46927 * 108.77615 * 174.58919 * 14 12 11 16 16 C 1.36939 * 120.63286 * 126.41306 * 15 14 12 17 17 H 1.08001 * 120.00202 * 207.66240 * 16 15 14 18 18 C 1.38811 * 119.99864 * 27.66453 * 16 15 14 19 19 N 1.31620 * 119.99797 * 17.36425 * 18 16 15 20 20 Si 1.86795 * 119.99956 * 197.36956 * 18 16 15 21 21 H 1.48501 * 109.47252 * 89.99908 * 20 18 16 22 22 H 1.48498 * 109.47215 * 209.99659 * 20 18 16 23 23 H 1.48504 * 109.47220 * 329.99702 * 20 18 16 24 24 C 1.46934 * 118.73957 * 306.39082 * 15 14 12 25 25 C 1.53195 * 108.77164 * 53.61019 * 24 15 14 26 26 C 1.53039 * 109.31279 * 305.36408 * 25 24 15 27 27 H 1.09000 * 109.45202 * 301.35482 * 26 25 24 28 28 C 1.53004 * 109.46154 * 181.39057 * 26 25 24 29 29 C 1.38339 * 120.27127 * 269.98292 * 3 2 1 30 30 H 1.09001 * 109.47374 * 299.99727 * 1 2 3 31 31 H 1.09000 * 109.47249 * 60.00090 * 1 2 3 32 32 H 1.09006 * 109.47162 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47374 * 240.00273 * 2 1 3 34 34 H 1.09000 * 109.47249 * 119.99910 * 2 1 3 35 35 H 1.07997 * 119.40672 * 359.95553 * 4 3 2 36 36 H 0.96702 * 113.99484 * 270.27017 * 7 6 5 37 37 H 0.97004 * 120.00079 * 0.02562 * 11 9 8 38 38 H 1.08996 * 109.58593 * 294.37630 * 14 12 11 39 39 H 1.09000 * 109.58840 * 54.80216 * 14 12 11 40 40 H 0.97005 * 119.99756 * 180.02562 * 19 18 16 41 41 H 1.08994 * 109.58478 * 293.82670 * 24 15 14 42 42 H 1.08994 * 109.70229 * 173.46151 * 24 15 14 43 43 H 1.09003 * 109.49212 * 185.41554 * 25 24 15 44 44 H 1.08996 * 109.50145 * 65.31805 * 25 24 15 45 45 H 1.09002 * 109.46735 * 299.93066 * 28 26 25 46 46 H 1.08996 * 109.47103 * 59.93083 * 28 26 25 47 47 H 1.08998 * 109.47058 * 179.97438 * 28 26 25 48 48 H 1.08007 * 120.82500 * 0.03580 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2648 2.0783 1.1949 5 7 2.6999 3.3231 1.2159 6 6 2.9433 3.9951 0.1033 7 8 3.3941 5.2703 0.1722 8 6 2.7318 3.3970 -1.1478 9 6 2.9962 4.1447 -2.3918 10 8 3.4015 5.2898 -2.3385 11 7 2.7885 3.5585 -3.5875 12 6 3.0515 4.3008 -4.8228 13 1 2.7994 5.3512 -4.6767 14 6 4.5339 4.1761 -5.1885 15 7 4.7543 4.8143 -6.4934 16 6 5.7145 5.7789 -6.6451 17 1 5.6022 6.5378 -7.4053 18 6 6.8321 5.7812 -5.8218 19 7 7.1509 4.7001 -5.1422 20 14 7.8833 7.3186 -5.6784 21 1 7.3729 8.1657 -4.5706 22 1 9.2896 6.9323 -5.3986 23 1 7.8231 8.0800 -6.9520 24 6 3.9253 4.3976 -7.6328 25 6 2.4497 4.5199 -7.2396 26 6 2.2002 3.7242 -5.9564 27 1 2.4700 2.6805 -6.1182 28 6 0.7201 3.8155 -5.5796 29 6 2.2651 2.0781 -1.1948 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0823 1.5645 2.1271 36 1 2.6921 5.9351 0.1921 37 1 2.4647 2.6451 -3.6301 38 1 5.1400 4.6735 -4.4314 39 1 4.8088 3.1229 -5.2458 40 1 7.9317 4.7018 -4.5666 41 1 4.1505 3.3625 -7.8892 42 1 4.1294 5.0393 -8.4898 43 1 1.8258 4.1235 -8.0407 44 1 2.2037 5.5683 -7.0712 45 1 0.4503 4.8590 -5.4172 46 1 0.1137 3.4048 -6.3868 47 1 0.5422 3.2484 -4.6659 48 1 2.0908 1.5861 -2.1403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968480621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:50 Heat of formation + Delta-G solvation = -55.285310 kcal Electronic energy + Delta-G solvation = -29689.150152 eV Core-core repulsion = 25743.443640 eV Total energy + Delta-G solvation = -3945.706512 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.00977 -40.62456 -39.07565 -38.35295 -36.10792 -35.21106 -34.81212 -33.42690 -32.76976 -30.47115 -29.97073 -28.98294 -26.17529 -25.69950 -24.98409 -24.05064 -22.81445 -22.47527 -21.52173 -20.84134 -19.92301 -18.79851 -18.41328 -18.27607 -17.15257 -16.96937 -16.64872 -15.93103 -15.81124 -15.50274 -15.43989 -15.24797 -14.93621 -14.82393 -14.63759 -14.54138 -14.15765 -14.10023 -13.70016 -13.55319 -13.28746 -13.09997 -13.05920 -12.82219 -12.78222 -12.59859 -12.34552 -12.32033 -12.16801 -11.90940 -11.79849 -11.64234 -11.47234 -11.22000 -11.09752 -11.00052 -10.57944 -10.44619 -10.13454 -9.78744 -8.71809 -7.91807 -5.37146 -0.49058 0.01164 1.37732 1.44196 1.49383 1.79795 2.06060 2.46474 2.49549 2.73450 3.24651 3.43906 3.61921 3.69579 3.74591 3.84254 3.84744 3.99630 4.14085 4.17897 4.27968 4.47060 4.52053 4.56300 4.58215 4.66520 4.70589 4.73120 4.84601 4.92580 4.94252 4.98113 5.11728 5.18109 5.20513 5.20662 5.27718 5.35557 5.39961 5.42792 5.45604 5.52480 5.52840 5.60020 5.77198 6.33316 6.46964 6.57525 6.78529 7.09282 7.25024 7.83318 8.31586 9.12607 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.003796 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.286934 B = 7373.750534 C = 8834.726159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.075 4.075 3 C -0.139 4.139 4 C 0.146 3.854 5 N -0.526 5.526 6 C 0.338 3.662 7 O -0.484 6.484 8 C -0.211 4.211 9 C 0.552 3.448 10 O -0.565 6.565 11 N -0.698 5.698 12 C 0.142 3.858 13 H 0.050 0.950 14 C 0.178 3.822 15 N -0.609 5.609 16 C -0.263 4.263 17 H 0.069 0.931 18 C -0.050 4.050 19 N -0.930 5.930 20 Si 0.959 3.041 21 H -0.297 1.297 22 H -0.292 1.292 23 H -0.259 1.259 24 C 0.135 3.865 25 C -0.116 4.116 26 C -0.085 4.085 27 H 0.082 0.918 28 C -0.135 4.135 29 C -0.023 4.023 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.199 0.801 36 H 0.413 0.587 37 H 0.410 0.590 38 H 0.040 0.960 39 H -0.001 1.001 40 H 0.246 0.754 41 H 0.023 0.977 42 H 0.055 0.945 43 H 0.098 0.902 44 H 0.049 0.951 45 H 0.041 0.959 46 H 0.079 0.921 47 H 0.063 0.937 48 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.075 -13.537 8.284 25.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.141 4.141 4 C -0.011 4.011 5 N -0.245 5.245 6 C 0.159 3.841 7 O -0.293 6.293 8 C -0.218 4.218 9 C 0.339 3.661 10 O -0.444 6.444 11 N -0.350 5.350 12 C 0.036 3.964 13 H 0.068 0.932 14 C 0.051 3.949 15 N -0.333 5.333 16 C -0.393 4.393 17 H 0.087 0.913 18 C -0.246 4.246 19 N -0.576 5.576 20 Si 0.787 3.213 21 H -0.224 1.224 22 H -0.218 1.218 23 H -0.183 1.183 24 C 0.011 3.989 25 C -0.155 4.155 26 C -0.104 4.104 27 H 0.100 0.900 28 C -0.192 4.192 29 C -0.049 4.049 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.215 0.785 36 H 0.274 0.726 37 H 0.247 0.753 38 H 0.058 0.942 39 H 0.017 0.983 40 H 0.055 0.945 41 H 0.040 0.960 42 H 0.074 0.926 43 H 0.116 0.884 44 H 0.068 0.932 45 H 0.060 0.940 46 H 0.098 0.902 47 H 0.082 0.918 48 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -18.946 -12.486 9.108 24.450 hybrid contribution 0.809 0.805 -0.464 1.232 sum -18.137 -11.682 8.644 23.241 Atomic orbital electron populations 1.21783 0.93665 1.02923 1.02166 1.20577 0.96712 0.88772 1.05209 1.21207 1.00791 0.99688 0.92458 1.23339 0.90167 0.87747 0.99868 1.67362 1.14741 1.11485 1.30900 1.19404 0.90351 0.87107 0.87227 1.84712 1.36348 1.12819 1.95452 1.21068 1.09242 0.98218 0.93231 1.18304 0.77481 0.86172 0.84133 1.90830 1.46161 1.19834 1.87578 1.45705 1.66972 1.17711 1.04623 1.21521 0.96454 0.95157 0.83272 0.93151 1.20784 0.92236 0.93979 0.87869 1.44247 1.39496 1.44760 1.04807 1.19506 0.97776 1.04136 1.17903 0.91302 1.25763 0.98200 0.99338 1.01256 1.70166 1.27319 1.27553 1.32574 0.85383 0.77605 0.80010 0.78253 1.22430 1.21819 1.18295 1.21184 0.90745 0.97220 0.89791 1.21971 0.96568 0.99805 0.97150 1.21280 0.95653 1.00059 0.93376 0.89998 1.21772 0.93566 1.01596 1.02249 1.21936 0.91490 0.90514 1.00922 0.92508 0.92886 0.90661 0.89318 0.88502 0.78457 0.72571 0.75265 0.94168 0.98265 0.94549 0.95951 0.92637 0.88353 0.93196 0.93960 0.90162 0.91753 0.81430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 71.98 0.71 -0.25 16 2 C -0.07 -0.57 6.08 29.85 0.18 -0.39 16 3 C -0.14 -2.11 5.14 -19.81 -0.10 -2.21 16 4 C 0.15 2.62 10.84 84.71 0.92 3.54 16 5 N -0.53 -14.22 10.37 -308.00 -3.19 -17.42 16 6 C 0.34 10.77 7.77 85.13 0.66 11.43 16 7 O -0.48 -17.17 11.66 -66.42 -0.77 -17.95 16 8 C -0.21 -6.25 5.90 -19.91 -0.12 -6.37 16 9 C 0.55 20.66 7.74 86.69 0.67 21.34 16 10 O -0.56 -27.26 14.85 16.82 0.25 -27.01 16 11 N -0.70 -22.46 4.32 -445.34 -1.92 -24.38 16 12 C 0.14 5.53 2.07 45.07 0.09 5.62 16 13 H 0.05 2.32 7.58 -2.39 -0.02 2.30 16 14 C 0.18 9.12 4.89 86.36 0.42 9.54 16 15 N -0.61 -31.84 3.00 -699.09 -2.09 -33.93 16 16 C -0.26 -15.34 9.59 84.03 0.81 -14.54 16 17 H 0.07 3.88 7.89 -2.91 -0.02 3.86 16 18 C -0.05 -3.01 4.91 84.86 0.42 -2.60 16 19 N -0.93 -59.41 11.19 21.65 0.24 -59.17 16 20 Si 0.96 49.00 29.59 68.60 2.03 51.03 16 21 H -0.30 -15.58 7.11 99.48 0.71 -14.88 16 22 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 23 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 24 C 0.14 5.47 6.51 86.36 0.56 6.03 16 25 C -0.12 -3.55 5.36 30.67 0.16 -3.39 16 26 C -0.08 -2.42 2.27 -10.76 -0.02 -2.45 16 27 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 28 C -0.13 -2.83 9.02 71.98 0.65 -2.18 16 29 C -0.02 -0.44 9.31 22.72 0.21 -0.23 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.07 0.32 8.14 -2.38 -0.02 0.30 16 33 H 0.09 0.56 8.09 -2.39 -0.02 0.54 16 34 H 0.10 0.45 8.09 -2.39 -0.02 0.43 16 35 H 0.20 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.41 11.09 9.06 -74.06 -0.67 10.42 16 37 H 0.41 9.45 6.41 -92.71 -0.59 8.85 16 38 H 0.04 2.50 6.04 -2.39 -0.01 2.49 16 39 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.25 15.41 8.31 -92.70 -0.77 14.63 16 41 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.06 2.20 7.94 -2.39 -0.02 2.18 16 43 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.06 1.15 7.36 -2.39 -0.02 1.14 16 48 H 0.17 2.19 6.52 -2.91 -0.02 2.17 16 Total: -1.00 -85.80 386.34 0.48 -85.32 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -0.28 Total: 20.61 kcal Atomic # 6 Polarization: 16.66 SS G_CDS: 6.23 Total: 22.89 kcal Atomic # 7 Polarization: -127.93 SS G_CDS: -6.97 Total: -134.90 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -0.52 Total: -44.96 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.03 Total: 51.03 kcal Total: -85.80 0.48 -85.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968480621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.039 kcal (2) G-P(sol) polarization free energy of solvation -85.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds