Wall clock time and date at job start Tue Mar 31 2020 17:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.46976 * 2 1 4 4 C 1.38355 * 120.27188 * 90.00414 * 3 2 1 5 5 N 1.31882 * 121.18713 * 180.02562 * 4 3 2 6 6 C 1.32238 * 121.80105 * 359.97438 * 5 4 3 7 7 O 1.35426 * 119.79732 * 180.02562 * 6 5 4 8 8 C 1.40283 * 120.40049 * 0.02562 * 6 5 4 9 9 C 1.47524 * 120.59507 * 179.97438 * 8 6 5 10 10 O 1.21589 * 119.99929 * 0.02562 * 9 8 6 11 11 N 1.34773 * 119.99652 * 180.02562 * 9 8 6 12 12 C 1.46500 * 120.00063 * 179.97438 * 11 9 8 13 13 H 1.09005 * 110.63957 * 328.14482 * 12 11 9 14 14 C 1.54327 * 110.71866 * 91.47566 * 12 11 9 15 15 N 1.47024 * 107.26774 * 96.17335 * 14 12 11 16 16 C 1.36941 * 125.64618 * 179.20447 * 15 14 12 17 17 H 1.08005 * 119.99780 * 179.68989 * 16 15 14 18 18 C 1.38813 * 119.99913 * 359.69358 * 16 15 14 19 19 N 1.31616 * 119.99926 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99719 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47563 * 59.99703 * 20 18 16 22 22 H 1.48504 * 109.46777 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47166 * 299.99426 * 20 18 16 24 24 C 1.47426 * 108.70449 * 358.94057 * 15 14 12 25 25 C 1.54912 * 104.83261 * 24.12870 * 24 15 14 26 26 C 1.53004 * 111.00325 * 81.06512 * 25 24 15 27 27 C 1.52998 * 111.00343 * 204.88065 * 25 24 15 28 28 C 1.38343 * 120.27599 * 270.25617 * 3 2 1 29 29 H 1.08994 * 109.47544 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47370 * 300.00284 * 1 2 3 31 31 H 1.09004 * 109.47522 * 60.00032 * 1 2 3 32 32 H 1.08997 * 109.46749 * 240.00255 * 2 1 3 33 33 H 1.08992 * 109.47144 * 120.00029 * 2 1 3 34 34 H 1.07997 * 119.40790 * 359.97438 * 4 3 2 35 35 H 0.96699 * 114.00527 * 270.01762 * 7 6 5 36 36 H 0.97005 * 120.00259 * 359.97438 * 11 9 8 37 37 H 1.08995 * 109.88184 * 336.75758 * 14 12 11 38 38 H 1.09002 * 109.88385 * 215.58765 * 14 12 11 39 39 H 0.97001 * 119.99407 * 180.02562 * 19 18 16 40 40 H 1.09002 * 110.36518 * 142.96440 * 24 15 14 41 41 H 1.08995 * 110.36673 * 265.17549 * 24 15 14 42 42 H 1.08994 * 109.46864 * 61.44984 * 26 25 24 43 43 H 1.09000 * 109.46578 * 181.45533 * 26 25 24 44 44 H 1.08996 * 109.46833 * 301.45173 * 26 25 24 45 45 H 1.08992 * 109.47271 * 58.54108 * 27 25 24 46 46 H 1.09003 * 109.47056 * 178.54990 * 27 25 24 47 47 H 1.09006 * 109.46578 * 298.54351 * 27 25 24 48 48 H 1.08003 * 120.82156 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2648 2.0783 1.1949 5 7 2.7039 3.3217 1.2160 6 6 2.9420 3.9956 0.1034 7 8 3.3928 5.2708 0.1723 8 6 2.7305 3.3976 -1.1479 9 6 2.9942 4.1456 -2.3918 10 8 3.3990 5.2909 -2.3382 11 7 2.7863 3.5594 -3.5874 12 6 3.0476 4.3023 -4.8227 13 1 2.8520 5.3652 -4.6806 14 6 4.4952 4.0693 -5.3042 15 7 4.4537 2.9965 -6.3087 16 6 5.5319 2.5011 -6.9923 17 1 5.3971 1.7051 -7.7097 18 6 6.7980 3.0219 -6.7630 19 7 6.9621 3.9922 -5.8890 20 14 8.2687 2.3466 -7.6960 21 1 8.0606 2.5380 -9.1538 22 1 9.4965 3.0669 -7.2729 23 1 8.4181 0.8984 -7.4033 24 6 3.0600 2.5381 -6.4535 25 6 2.1975 3.7394 -5.9922 26 6 2.0524 4.7723 -7.1116 27 6 0.8262 3.2728 -5.4994 28 6 2.2597 2.0802 -1.1947 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0828 1.5644 2.1271 35 1 2.6909 5.9356 0.1927 36 1 2.4636 2.6456 -3.6301 37 1 5.1209 3.7669 -4.4645 38 1 4.8883 4.9818 -5.7524 39 1 7.8469 4.3563 -5.7291 40 1 2.8467 2.2955 -7.4945 41 1 2.8776 1.6717 -5.8178 42 1 1.5501 4.3157 -7.9644 43 1 1.4641 5.6168 -6.7527 44 1 3.0398 5.1201 -7.4151 45 1 0.9557 2.5715 -4.6752 46 1 0.2509 4.1332 -5.1577 47 1 0.2952 2.7812 -6.3147 48 1 2.0813 1.5896 -2.1402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977412967.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:43 Heat of formation + Delta-G solvation = -17.895715 kcal Electronic energy + Delta-G solvation = -29808.965273 eV Core-core repulsion = 25864.880095 eV Total energy + Delta-G solvation = -3944.085177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.95584 -39.47866 -37.86440 -37.23979 -34.46038 -33.93717 -33.25174 -32.10364 -30.70246 -29.32210 -28.08336 -26.85462 -25.65187 -24.88416 -24.21621 -23.44644 -22.02669 -20.51662 -19.94323 -19.03810 -18.64910 -17.34363 -17.13257 -16.67919 -16.08906 -15.56887 -14.89981 -14.84143 -14.49195 -14.26655 -14.17035 -13.96767 -13.88569 -13.68836 -13.34132 -13.28950 -12.86336 -12.50343 -12.42785 -12.06844 -12.03011 -11.95378 -11.69676 -11.58083 -11.39856 -11.32212 -11.10373 -10.99836 -10.76381 -10.41340 -10.28077 -10.06706 -10.00846 -9.94650 -9.89360 -9.64224 -9.33652 -8.92356 -8.62888 -8.44872 -6.82866 -5.68168 -3.03556 0.50870 0.91892 2.96597 3.34663 3.41215 3.45347 3.47793 3.51057 3.79376 4.32676 4.47706 4.50812 4.57156 4.60986 4.90477 4.97086 5.01972 5.05367 5.23626 5.26993 5.27965 5.42052 5.53023 5.53369 5.59756 5.62085 5.66983 5.78227 5.86840 5.87717 5.97532 5.99541 6.13313 6.16977 6.19556 6.26000 6.37281 6.55469 6.57862 6.64731 6.69546 6.92340 7.46919 7.55378 7.63722 7.71933 7.80823 7.89671 8.26361 8.53877 9.22465 9.83296 10.48358 11.42263 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011358 B = 0.003579 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.538579 B = 7820.727380 C = 8132.632599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 C -0.154 4.154 4 C 0.144 3.856 5 N -0.506 5.506 6 C 0.362 3.638 7 O -0.457 6.457 8 C -0.190 4.190 9 C 0.558 3.442 10 O -0.518 6.518 11 N -0.704 5.704 12 C 0.124 3.876 13 H 0.091 0.909 14 C 0.175 3.825 15 N -0.602 5.602 16 C -0.233 4.233 17 H 0.077 0.923 18 C -0.005 4.005 19 N -0.917 5.917 20 Si 0.911 3.089 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.286 1.286 24 C 0.144 3.856 25 C -0.090 4.090 26 C -0.125 4.125 27 C -0.130 4.130 28 C -0.028 4.028 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.162 0.838 35 H 0.403 0.597 36 H 0.393 0.607 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.254 0.746 40 H 0.041 0.959 41 H 0.013 0.987 42 H 0.053 0.947 43 H 0.047 0.953 44 H 0.069 0.931 45 H 0.048 0.952 46 H 0.053 0.947 47 H 0.055 0.945 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.357 -5.586 10.523 21.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 C -0.156 4.156 4 C -0.014 4.014 5 N -0.224 5.224 6 C 0.182 3.818 7 O -0.264 6.264 8 C -0.196 4.196 9 C 0.343 3.657 10 O -0.394 6.394 11 N -0.355 5.355 12 C 0.020 3.980 13 H 0.109 0.891 14 C 0.049 3.951 15 N -0.329 5.329 16 C -0.361 4.361 17 H 0.095 0.905 18 C -0.202 4.202 19 N -0.564 5.564 20 Si 0.741 3.259 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.213 1.213 24 C 0.018 3.982 25 C -0.092 4.092 26 C -0.183 4.183 27 C -0.188 4.188 28 C -0.054 4.054 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.179 0.821 35 H 0.262 0.738 36 H 0.228 0.772 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.031 0.969 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.084 -4.446 11.287 20.146 hybrid contribution 0.298 -1.030 -1.225 1.628 sum -15.786 -5.476 10.062 19.504 Atomic orbital electron populations 1.21780 0.94442 1.02054 1.02312 1.20469 0.96267 0.91229 1.03721 1.20830 1.02827 0.98330 0.93650 1.22585 0.92128 0.88913 0.97737 1.67319 1.13761 1.09842 1.31497 1.19184 0.89078 0.87219 0.86291 1.84758 1.34816 1.11526 1.95286 1.21279 1.06497 0.96633 0.95229 1.17715 0.78592 0.86504 0.82842 1.90816 1.44406 1.17340 1.86885 1.45918 1.67120 1.17035 1.05446 1.22516 0.98363 0.95593 0.81549 0.89081 1.21531 0.88659 0.92587 0.92272 1.44426 1.01334 1.40962 1.46152 1.18964 0.85074 1.15133 1.16965 0.90545 1.24809 0.97474 0.98607 0.99303 1.69947 1.21850 1.28196 1.36417 0.86231 0.82342 0.78092 0.79238 1.21178 1.21612 1.21269 1.21616 0.85768 0.92872 0.97980 1.22025 0.94099 0.97659 0.95370 1.21587 1.02588 0.97293 0.96789 1.21673 0.96105 1.00624 1.00391 1.21640 0.92677 0.92229 0.98883 0.92051 0.92497 0.92436 0.90344 0.90375 0.82111 0.73801 0.77175 0.93378 0.92698 0.93584 0.94076 0.96932 0.92804 0.93369 0.91213 0.93301 0.92838 0.92585 0.84181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.89 37.16 0.37 -0.48 16 2 C -0.08 -0.52 6.08 -27.89 -0.17 -0.69 16 3 C -0.15 -1.47 5.14 -104.54 -0.54 -2.01 16 4 C 0.14 1.48 10.84 -17.49 -0.19 1.29 16 5 N -0.51 -6.86 10.37 -12.98 -0.13 -6.99 16 6 C 0.36 5.44 7.77 -16.61 -0.13 5.31 16 7 O -0.46 -7.08 11.66 -39.74 -0.46 -7.54 16 8 C -0.19 -2.78 5.90 -104.69 -0.62 -3.40 16 9 C 0.56 9.81 7.77 -12.48 -0.10 9.71 16 10 O -0.52 -10.86 14.84 -16.48 -0.24 -11.11 16 11 N -0.70 -11.59 4.37 -53.07 -0.23 -11.82 16 12 C 0.12 2.34 2.59 -66.10 -0.17 2.16 16 13 H 0.09 1.78 7.45 -51.93 -0.39 1.39 16 14 C 0.17 4.28 4.73 -3.06 -0.01 4.27 16 15 N -0.60 -14.86 3.38 -170.07 -0.58 -15.44 16 16 C -0.23 -6.41 10.28 -15.06 -0.15 -6.56 16 17 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 18 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 19 N -0.92 -27.49 10.31 55.49 0.57 -26.91 16 20 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 C 0.14 2.78 6.12 -2.53 -0.02 2.76 16 25 C -0.09 -1.45 0.83 -152.36 -0.13 -1.57 16 26 C -0.12 -1.94 8.61 37.16 0.32 -1.62 16 27 C -0.13 -1.60 8.35 37.16 0.31 -1.29 16 28 C -0.03 -0.32 9.31 -38.89 -0.36 -0.68 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 33 H 0.08 0.42 8.09 -51.93 -0.42 0.00 16 34 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.40 4.35 9.06 45.56 0.41 4.77 16 36 H 0.39 5.53 5.15 -40.82 -0.21 5.32 16 37 H 0.05 1.37 7.41 -51.93 -0.38 0.98 16 38 H 0.05 1.52 7.38 -51.93 -0.38 1.14 16 39 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.04 0.78 8.05 -51.93 -0.42 0.37 16 41 H 0.01 0.24 8.04 -51.93 -0.42 -0.18 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 1.29 7.81 -51.93 -0.41 0.89 16 45 H 0.05 0.54 6.27 -51.93 -0.33 0.22 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.14 1.32 6.52 -52.48 -0.34 0.98 16 LS Contribution 386.03 15.07 5.82 5.82 Total: -1.00 -34.86 386.03 -8.60 -43.46 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.63 Total: 6.33 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -1.68 Total: 6.96 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: -0.37 Total: -61.17 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.71 Total: -18.65 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.86 -8.60 -43.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977412967.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.562 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds