Wall clock time and date at job start Tue Mar 31 2020 17:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.46976 * 2 1 4 4 C 1.38355 * 120.27188 * 90.00414 * 3 2 1 5 5 N 1.31882 * 121.18713 * 180.02562 * 4 3 2 6 6 C 1.32238 * 121.80105 * 359.97438 * 5 4 3 7 7 O 1.35426 * 119.79732 * 180.02562 * 6 5 4 8 8 C 1.40283 * 120.40049 * 0.02562 * 6 5 4 9 9 C 1.47524 * 120.59507 * 179.97438 * 8 6 5 10 10 O 1.21589 * 119.99929 * 0.02562 * 9 8 6 11 11 N 1.34773 * 119.99652 * 180.02562 * 9 8 6 12 12 C 1.46500 * 120.00063 * 179.97438 * 11 9 8 13 13 H 1.09005 * 110.63957 * 328.14482 * 12 11 9 14 14 C 1.54327 * 110.71866 * 91.47566 * 12 11 9 15 15 N 1.47024 * 107.26774 * 96.17335 * 14 12 11 16 16 C 1.36941 * 125.64618 * 179.20447 * 15 14 12 17 17 H 1.08005 * 119.99780 * 179.68989 * 16 15 14 18 18 C 1.38813 * 119.99913 * 359.69358 * 16 15 14 19 19 N 1.31616 * 119.99926 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99719 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47563 * 59.99703 * 20 18 16 22 22 H 1.48504 * 109.46777 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47166 * 299.99426 * 20 18 16 24 24 C 1.47426 * 108.70449 * 358.94057 * 15 14 12 25 25 C 1.54912 * 104.83261 * 24.12870 * 24 15 14 26 26 C 1.53004 * 111.00325 * 81.06512 * 25 24 15 27 27 C 1.52998 * 111.00343 * 204.88065 * 25 24 15 28 28 C 1.38343 * 120.27599 * 270.25617 * 3 2 1 29 29 H 1.08994 * 109.47544 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47370 * 300.00284 * 1 2 3 31 31 H 1.09004 * 109.47522 * 60.00032 * 1 2 3 32 32 H 1.08997 * 109.46749 * 240.00255 * 2 1 3 33 33 H 1.08992 * 109.47144 * 120.00029 * 2 1 3 34 34 H 1.07997 * 119.40790 * 359.97438 * 4 3 2 35 35 H 0.96699 * 114.00527 * 270.01762 * 7 6 5 36 36 H 0.97005 * 120.00259 * 359.97438 * 11 9 8 37 37 H 1.08995 * 109.88184 * 336.75758 * 14 12 11 38 38 H 1.09002 * 109.88385 * 215.58765 * 14 12 11 39 39 H 0.97001 * 119.99407 * 180.02562 * 19 18 16 40 40 H 1.09002 * 110.36518 * 142.96440 * 24 15 14 41 41 H 1.08995 * 110.36673 * 265.17549 * 24 15 14 42 42 H 1.08994 * 109.46864 * 61.44984 * 26 25 24 43 43 H 1.09000 * 109.46578 * 181.45533 * 26 25 24 44 44 H 1.08996 * 109.46833 * 301.45173 * 26 25 24 45 45 H 1.08992 * 109.47271 * 58.54108 * 27 25 24 46 46 H 1.09003 * 109.47056 * 178.54990 * 27 25 24 47 47 H 1.09006 * 109.46578 * 298.54351 * 27 25 24 48 48 H 1.08003 * 120.82156 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2648 2.0783 1.1949 5 7 2.7039 3.3217 1.2160 6 6 2.9420 3.9956 0.1034 7 8 3.3928 5.2708 0.1723 8 6 2.7305 3.3976 -1.1479 9 6 2.9942 4.1456 -2.3918 10 8 3.3990 5.2909 -2.3382 11 7 2.7863 3.5594 -3.5874 12 6 3.0476 4.3023 -4.8227 13 1 2.8520 5.3652 -4.6806 14 6 4.4952 4.0693 -5.3042 15 7 4.4537 2.9965 -6.3087 16 6 5.5319 2.5011 -6.9923 17 1 5.3971 1.7051 -7.7097 18 6 6.7980 3.0219 -6.7630 19 7 6.9621 3.9922 -5.8890 20 14 8.2687 2.3466 -7.6960 21 1 8.0606 2.5380 -9.1538 22 1 9.4965 3.0669 -7.2729 23 1 8.4181 0.8984 -7.4033 24 6 3.0600 2.5381 -6.4535 25 6 2.1975 3.7394 -5.9922 26 6 2.0524 4.7723 -7.1116 27 6 0.8262 3.2728 -5.4994 28 6 2.2597 2.0802 -1.1947 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0828 1.5644 2.1271 35 1 2.6909 5.9356 0.1927 36 1 2.4636 2.6456 -3.6301 37 1 5.1209 3.7669 -4.4645 38 1 4.8883 4.9818 -5.7524 39 1 7.8469 4.3563 -5.7291 40 1 2.8467 2.2955 -7.4945 41 1 2.8776 1.6717 -5.8178 42 1 1.5501 4.3157 -7.9644 43 1 1.4641 5.6168 -6.7527 44 1 3.0398 5.1201 -7.4151 45 1 0.9557 2.5715 -4.6752 46 1 0.2509 4.1332 -5.1577 47 1 0.2952 2.7812 -6.3147 48 1 2.0813 1.5896 -2.1402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977412967.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:42 Heat of formation + Delta-G solvation = -43.837632 kcal Electronic energy + Delta-G solvation = -29810.090199 eV Core-core repulsion = 25864.880095 eV Total energy + Delta-G solvation = -3945.210103 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.03962 -40.86345 -39.27352 -38.33921 -35.72131 -35.20425 -34.70107 -33.18204 -32.61246 -30.13314 -29.69894 -28.07577 -27.42548 -26.03653 -25.06190 -24.88195 -23.09353 -22.05489 -21.41340 -20.29419 -19.83196 -18.70578 -18.44379 -18.24243 -17.14472 -17.03544 -16.63955 -15.92763 -15.82365 -15.61690 -15.38286 -15.33719 -14.85573 -14.78681 -14.62035 -14.29956 -13.97964 -13.74762 -13.69588 -13.45648 -13.15352 -13.09721 -12.98474 -12.85232 -12.79811 -12.65173 -12.58231 -12.31139 -12.18826 -11.86153 -11.80297 -11.73767 -11.54049 -11.32605 -11.19250 -11.00210 -10.74817 -10.45557 -10.06749 -9.76973 -8.89563 -7.83650 -5.20538 -0.49266 0.00941 1.43244 1.46759 1.53406 1.77652 2.05902 2.48616 2.49736 2.73099 3.34701 3.43094 3.48933 3.65567 3.69698 3.72409 3.83141 3.96108 4.06743 4.14849 4.28398 4.39144 4.50068 4.52263 4.55913 4.68814 4.71373 4.82954 4.86227 4.88681 4.94274 4.95615 5.04280 5.12405 5.17114 5.20627 5.28067 5.35155 5.35575 5.39710 5.45959 5.52371 5.56044 5.69942 5.73521 6.17084 6.45419 6.55799 6.79104 7.07322 7.19080 7.77981 8.42013 9.25266 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011358 B = 0.003579 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.538579 B = 7820.727380 C = 8132.632599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.076 4.076 3 C -0.140 4.140 4 C 0.148 3.852 5 N -0.524 5.524 6 C 0.342 3.658 7 O -0.482 6.482 8 C -0.211 4.211 9 C 0.555 3.445 10 O -0.563 6.563 11 N -0.692 5.692 12 C 0.138 3.862 13 H 0.080 0.920 14 C 0.193 3.807 15 N -0.620 5.620 16 C -0.237 4.237 17 H 0.089 0.911 18 C -0.069 4.069 19 N -0.954 5.954 20 Si 0.977 3.023 21 H -0.274 1.274 22 H -0.302 1.302 23 H -0.275 1.275 24 C 0.138 3.862 25 C -0.074 4.074 26 C -0.123 4.123 27 C -0.123 4.123 28 C -0.025 4.025 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.200 0.800 35 H 0.415 0.585 36 H 0.407 0.593 37 H -0.003 1.003 38 H 0.005 0.995 39 H 0.242 0.758 40 H 0.050 0.950 41 H 0.033 0.967 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.028 0.972 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.080 0.920 48 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.417 -8.956 10.706 24.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.142 4.142 4 C -0.009 4.009 5 N -0.243 5.243 6 C 0.163 3.837 7 O -0.291 6.291 8 C -0.218 4.218 9 C 0.343 3.657 10 O -0.443 6.443 11 N -0.344 5.344 12 C 0.032 3.968 13 H 0.098 0.902 14 C 0.067 3.933 15 N -0.346 5.346 16 C -0.366 4.366 17 H 0.107 0.893 18 C -0.262 4.262 19 N -0.603 5.603 20 Si 0.805 3.195 21 H -0.200 1.200 22 H -0.228 1.228 23 H -0.201 1.201 24 C 0.013 3.987 25 C -0.076 4.076 26 C -0.181 4.181 27 C -0.181 4.181 28 C -0.051 4.051 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.216 0.784 35 H 0.276 0.724 36 H 0.245 0.755 37 H 0.015 0.985 38 H 0.024 0.976 39 H 0.051 0.949 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.099 0.901 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -19.214 -7.874 11.451 23.712 hybrid contribution 1.196 -0.066 -1.226 1.714 sum -18.018 -7.940 10.225 22.186 Atomic orbital electron populations 1.21778 0.93499 1.02932 1.02251 1.20578 0.96882 0.88914 1.05048 1.21189 1.00908 0.99584 0.92502 1.23325 0.90053 0.87825 0.99714 1.67372 1.14710 1.11373 1.30846 1.19351 0.90183 0.87174 0.87017 1.84698 1.36344 1.12620 1.95427 1.21043 1.09289 0.98073 0.93404 1.18241 0.77385 0.86188 0.83905 1.90785 1.46425 1.19486 1.87585 1.45693 1.66752 1.17520 1.04440 1.22108 0.95373 0.95782 0.83558 0.90186 1.21072 0.91501 0.90473 0.90274 1.44671 1.03286 1.40885 1.45759 1.19455 0.86035 1.14631 1.16518 0.89335 1.25678 1.00506 0.99351 1.00670 1.70237 1.21401 1.30112 1.38599 0.85175 0.78389 0.77600 0.78323 1.19955 1.22827 1.20067 1.21909 0.83209 0.94549 0.99019 1.22000 0.95549 0.96155 0.93852 1.21589 1.00846 0.98113 0.97544 1.21654 0.93134 1.01612 1.01687 1.21900 0.91675 0.90813 1.00719 0.90730 0.92265 0.92889 0.89752 0.88434 0.78377 0.72381 0.75470 0.98526 0.97645 0.94869 0.93184 0.94949 0.90406 0.91352 0.95302 0.91897 0.91637 0.90131 0.82177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.89 71.98 0.71 -0.37 16 2 C -0.08 -0.68 6.08 29.85 0.18 -0.50 16 3 C -0.14 -2.23 5.14 -19.81 -0.10 -2.33 16 4 C 0.15 2.65 10.84 84.71 0.92 3.57 16 5 N -0.52 -13.78 10.37 -308.00 -3.19 -16.97 16 6 C 0.34 10.49 7.77 85.13 0.66 11.15 16 7 O -0.48 -15.90 11.66 -66.40 -0.77 -16.68 16 8 C -0.21 -6.21 5.90 -19.91 -0.12 -6.33 16 9 C 0.56 20.21 7.77 86.69 0.67 20.89 16 10 O -0.56 -25.24 14.84 16.82 0.25 -24.99 16 11 N -0.69 -22.81 4.37 -440.08 -1.92 -24.73 16 12 C 0.14 5.31 2.59 46.18 0.12 5.43 16 13 H 0.08 3.28 7.45 -2.38 -0.02 3.27 16 14 C 0.19 10.07 4.73 86.73 0.41 10.48 16 15 N -0.62 -31.26 3.38 -691.97 -2.34 -33.60 16 16 C -0.24 -13.25 10.28 84.03 0.86 -12.39 16 17 H 0.09 4.62 7.83 -2.91 -0.02 4.59 16 18 C -0.07 -4.06 5.49 84.86 0.47 -3.59 16 19 N -0.95 -60.80 10.31 21.65 0.22 -60.58 16 20 Si 0.98 46.93 29.55 68.60 2.03 48.96 16 21 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 23 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 24 C 0.14 5.08 6.12 86.86 0.53 5.61 16 25 C -0.07 -2.26 0.83 -50.79 -0.04 -2.30 16 26 C -0.12 -3.69 8.61 71.98 0.62 -3.07 16 27 C -0.12 -2.51 8.35 71.98 0.60 -1.91 16 28 C -0.03 -0.52 9.31 22.72 0.21 -0.31 16 29 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.08 0.72 8.09 -2.39 -0.02 0.70 16 33 H 0.10 0.56 8.09 -2.39 -0.02 0.54 16 34 H 0.20 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.41 9.94 9.06 -74.06 -0.67 9.27 16 36 H 0.41 10.76 5.15 -92.70 -0.48 10.28 16 37 H 0.00 -0.21 7.41 -2.39 -0.02 -0.23 16 38 H 0.01 0.33 7.38 -2.39 -0.02 0.31 16 39 H 0.24 15.29 8.31 -92.71 -0.77 14.52 16 40 H 0.05 1.78 8.05 -2.39 -0.02 1.76 16 41 H 0.03 1.10 8.04 -2.39 -0.02 1.08 16 42 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.03 1.08 7.81 -2.39 -0.02 1.06 16 45 H 0.06 1.12 6.27 -2.39 -0.02 1.10 16 46 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 47 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 48 H 0.16 2.54 6.52 -2.91 -0.02 2.52 16 Total: -1.00 -83.18 386.03 0.81 -82.37 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -0.16 Total: 22.21 kcal Atomic # 6 Polarization: 17.31 SS G_CDS: 6.71 Total: 24.02 kcal Atomic # 7 Polarization: -128.65 SS G_CDS: -7.23 Total: -135.89 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -0.52 Total: -41.66 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -83.18 0.81 -82.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977412967.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.528 kcal (2) G-P(sol) polarization free energy of solvation -83.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds