Wall clock time and date at job start Tue Mar 31 2020 18:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 N 1.29938 * 125.38221 * 89.71383 * 3 2 1 5 5 C 1.36068 * 108.47623 * 179.87706 * 4 3 2 6 6 C 1.47417 * 126.44760 * 180.15687 * 5 4 3 7 7 O 1.21609 * 120.00411 * 180.27647 * 6 5 4 8 8 N 1.34785 * 119.99888 * 0.26661 * 6 5 4 9 9 C 1.46504 * 119.99692 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.70986 * 35.60297 * 9 8 6 11 11 C 1.53303 * 109.71246 * 275.00014 * 9 8 6 12 12 C 1.52622 * 108.50026 * 176.53192 * 11 9 8 13 13 C 1.52987 * 110.93404 * 62.21315 * 12 11 9 14 14 H 1.08996 * 112.42782 * 73.37520 * 13 12 11 15 15 C 1.55840 * 106.37186 * 198.10586 * 13 12 11 16 16 N 1.47623 * 104.47094 * 77.05191 * 15 13 12 17 17 C 1.36937 * 125.72346 * 204.83043 * 16 15 13 18 18 H 1.07997 * 119.99480 * 180.02562 * 17 16 15 19 19 C 1.38807 * 120.00261 * 0.04739 * 17 16 15 20 20 N 1.31621 * 119.99981 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00101 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47044 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47479 * 119.99629 * 21 19 17 24 24 H 1.48506 * 109.47065 * 239.99887 * 21 19 17 25 25 C 1.47421 * 108.54663 * 24.87063 * 16 15 13 26 26 C 1.53381 * 106.51751 * 359.32958 * 25 16 15 27 27 H 1.08999 * 108.15189 * 91.62090 * 26 25 16 28 28 C 1.50893 * 113.07614 * 212.47314 * 26 25 16 29 29 C 1.36092 * 107.10489 * 0.38555 * 5 4 3 30 30 O 1.34055 * 125.37593 * 270.02471 * 3 2 1 31 31 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 32 32 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 34 34 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 35 35 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 36 36 H 0.96995 * 119.99965 * 0.02562 * 8 6 5 37 37 H 1.08995 * 109.63341 * 296.23457 * 11 9 8 38 38 H 1.08998 * 109.63004 * 56.83094 * 11 9 8 39 39 H 1.09004 * 109.18372 * 182.58213 * 12 11 9 40 40 H 1.09003 * 109.18957 * 301.88587 * 12 11 9 41 41 H 1.08997 * 110.43323 * 195.80663 * 15 13 12 42 42 H 1.09000 * 110.43269 * 318.30817 * 15 13 12 43 43 H 0.96998 * 119.99705 * 180.02562 * 20 19 17 44 44 H 1.09000 * 110.04998 * 240.05938 * 25 16 15 45 45 H 1.09005 * 110.08880 * 118.61665 * 25 16 15 46 46 H 1.09000 * 109.05457 * 305.29615 * 28 26 25 47 47 H 1.08996 * 109.05666 * 186.37347 * 28 26 25 48 48 H 1.07993 * 126.52739 * 179.75117 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2782 2.1319 1.0594 5 6 2.7167 3.3577 0.6637 6 6 3.1108 4.4729 1.5436 7 8 3.4825 5.5257 1.0616 8 7 3.0590 4.3257 2.8824 9 6 3.4501 5.4342 3.7568 10 1 3.1506 6.3806 3.3069 11 6 4.9689 5.4179 3.9644 12 6 5.3557 6.6310 4.8059 13 6 4.7036 6.5677 6.1883 14 1 5.1670 5.8210 6.8330 15 6 4.7650 8.0124 6.7695 16 7 3.6870 8.7380 6.0691 17 6 3.6348 10.0912 5.8662 18 1 2.7982 10.5263 5.3396 19 6 4.6571 10.9036 6.3369 20 7 5.6766 10.3733 6.9787 21 14 4.5855 12.7497 6.0606 22 1 3.3451 13.0915 5.3192 23 1 4.5870 13.4469 7.3718 24 1 5.7678 13.1783 5.2708 25 6 2.6756 7.7613 5.6257 26 6 3.1790 6.3814 6.0671 27 1 2.7686 6.1700 7.0545 28 6 2.7797 5.2757 5.1211 29 6 2.7180 3.3623 -0.6972 30 8 2.2907 2.1526 -1.0930 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5137 0.8901 35 1 1.8934 -0.5139 -0.8900 36 1 2.7627 3.4859 3.2669 37 1 5.2577 4.5045 4.4843 38 1 5.4711 5.4672 2.9983 39 1 6.4393 6.6557 4.9219 40 1 5.0292 7.5384 4.2977 41 1 4.5794 7.9987 7.8435 42 1 5.7318 8.4679 6.5553 43 1 6.3908 10.9410 7.3079 44 1 2.5757 7.7933 4.5408 45 1 1.7158 7.9768 6.0955 46 1 1.6977 5.2928 4.9902 47 1 3.0699 4.3172 5.5513 48 1 3.0074 4.1828 -1.3370 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979670491.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:07 Heat of formation + Delta-G solvation = -1.694569 kcal Electronic energy + Delta-G solvation = -28909.550636 eV Core-core repulsion = 24966.167993 eV Total energy + Delta-G solvation = -3943.382643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.74262 -40.05090 -38.73186 -35.51414 -35.35908 -34.33856 -33.24531 -31.59164 -30.72572 -29.83363 -28.85472 -26.10584 -25.17800 -24.79655 -23.91857 -22.15775 -21.78288 -21.09785 -20.48104 -19.82755 -18.72332 -17.79521 -17.15152 -16.87892 -16.51366 -16.30784 -15.29246 -15.01589 -14.88797 -14.73365 -14.41983 -13.96080 -13.81273 -13.74748 -13.59115 -13.36694 -13.18434 -12.44932 -12.30038 -12.15322 -12.00175 -11.74795 -11.68489 -11.59261 -11.42389 -11.16122 -11.04431 -10.98475 -10.86154 -10.56660 -10.44645 -10.24024 -9.95344 -9.75763 -9.63892 -9.40198 -9.35888 -9.29496 -8.84038 -8.58172 -6.74422 -5.58499 -2.99406 0.85065 1.72394 2.23282 3.03436 3.21685 3.44322 3.50011 3.52290 3.52859 4.39587 4.49447 4.55245 4.60481 4.68036 4.85402 4.96498 5.03954 5.22490 5.24029 5.29003 5.38356 5.45080 5.52033 5.54632 5.60759 5.63775 5.68241 5.74123 5.79365 5.92639 5.94663 6.05550 6.16803 6.25442 6.36346 6.48322 6.51816 6.60159 6.70699 6.76899 6.92315 7.05153 7.12712 7.21005 7.55648 7.56315 7.70123 7.93701 8.16362 8.43739 9.29265 9.89986 10.55913 11.45213 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023142 B = 0.002364 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.651182 B =11842.935201 C =12278.920568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.027 4.027 3 C 0.196 3.804 4 N -0.459 5.459 5 C -0.068 4.068 6 C 0.598 3.402 7 O -0.531 6.531 8 N -0.705 5.705 9 C 0.144 3.856 10 H 0.097 0.903 11 C -0.123 4.123 12 C -0.101 4.101 13 C -0.114 4.114 14 H 0.072 0.928 15 C 0.156 3.844 16 N -0.602 5.602 17 C -0.217 4.217 18 H 0.077 0.923 19 C -0.013 4.013 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.291 1.291 25 C 0.138 3.862 26 C -0.090 4.090 27 H 0.067 0.933 28 C -0.106 4.106 29 C 0.010 3.990 30 O -0.197 6.197 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.405 0.595 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.008 0.992 42 H 0.110 0.890 43 H 0.250 0.750 44 H 0.024 0.976 45 H 0.019 0.981 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.336 -23.693 -12.857 27.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.065 4.065 3 C -0.014 4.014 4 N -0.189 5.189 5 C -0.188 4.188 6 C 0.383 3.617 7 O -0.408 6.408 8 N -0.355 5.355 9 C 0.040 3.960 10 H 0.115 0.885 11 C -0.162 4.162 12 C -0.139 4.139 13 C -0.134 4.134 14 H 0.090 0.910 15 C 0.031 3.969 16 N -0.328 5.328 17 C -0.345 4.345 18 H 0.095 0.905 19 C -0.208 4.208 20 N -0.572 5.572 21 Si 0.743 3.257 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.218 1.218 25 C 0.013 3.987 26 C -0.110 4.110 27 H 0.085 0.915 28 C -0.144 4.144 29 C -0.064 4.064 30 O -0.083 6.083 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.239 0.761 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.026 0.974 42 H 0.127 0.873 43 H 0.061 0.939 44 H 0.042 0.958 45 H 0.037 0.963 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -7.052 -22.925 -12.530 27.061 hybrid contribution -0.106 0.874 -0.529 1.027 sum -7.159 -22.050 -13.059 26.608 Atomic orbital electron populations 1.21801 0.92878 1.03157 1.03146 1.20121 0.97000 0.83899 1.05444 1.26362 0.99642 0.96981 0.78367 1.70749 1.15638 1.02616 1.29944 1.21908 1.09386 0.94365 0.93153 1.16741 0.77806 0.85035 0.82130 1.90869 1.47587 1.27005 1.75315 1.45934 1.66526 1.17816 1.05200 1.21183 0.95141 0.89930 0.89713 0.88542 1.21900 0.94681 0.99431 1.00138 1.21365 0.99711 0.97709 0.95137 1.22596 0.93382 1.00513 0.96864 0.91008 1.22240 0.96125 0.85853 0.92672 1.44600 1.20599 1.02209 1.65376 1.19128 1.04619 0.80926 1.29863 0.90550 1.24761 0.97199 0.98128 1.00744 1.69795 1.11177 1.32858 1.43332 0.86022 0.77265 0.85151 0.77240 1.20592 1.21883 1.21802 1.21248 0.92547 0.88118 0.96830 1.21237 0.97216 0.94487 0.98026 0.91506 1.21167 1.00006 0.99298 0.93960 1.25327 0.98681 0.86537 0.95815 1.84389 1.63426 1.22567 1.37909 0.92088 0.90728 0.91579 0.87374 0.88692 0.76050 0.92437 0.92200 0.92465 0.90318 0.97445 0.87272 0.93894 0.95778 0.96287 0.91870 0.91807 0.75242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.90 37.16 0.37 -0.26 16 2 C -0.03 -0.12 6.56 -27.88 -0.18 -0.31 16 3 C 0.20 1.73 7.56 -13.08 -0.10 1.63 16 4 N -0.46 -5.11 11.06 -7.65 -0.08 -5.19 16 5 C -0.07 -0.84 6.99 -83.02 -0.58 -1.42 16 6 C 0.60 8.81 7.78 -12.52 -0.10 8.71 16 7 O -0.53 -9.52 16.57 5.27 0.09 -9.43 16 8 N -0.71 -9.46 5.10 -54.81 -0.28 -9.74 16 9 C 0.14 2.19 2.31 -67.86 -0.16 2.03 16 10 H 0.10 1.77 6.22 -51.93 -0.32 1.44 16 11 C -0.12 -1.93 5.52 -26.77 -0.15 -2.08 16 12 C -0.10 -1.88 4.81 -26.93 -0.13 -2.01 16 13 C -0.11 -2.15 3.72 -88.55 -0.33 -2.48 16 14 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 15 C 0.16 3.80 5.18 -1.91 -0.01 3.79 16 16 N -0.60 -15.57 2.93 -169.58 -0.50 -16.07 16 17 C -0.22 -6.16 10.28 -15.06 -0.15 -6.32 16 18 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 19 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 20 N -0.92 -27.21 10.09 55.49 0.56 -26.65 16 21 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 C 0.14 2.95 6.25 -3.34 -0.02 2.93 16 26 C -0.09 -1.57 2.69 -90.92 -0.24 -1.81 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 C -0.11 -1.49 4.83 -27.87 -0.13 -1.62 16 29 C 0.01 0.10 11.95 29.96 0.36 0.46 16 30 O -0.20 -1.83 10.73 6.49 0.07 -1.76 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.40 4.64 8.33 -40.82 -0.34 4.30 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.08 1.74 7.16 -51.93 -0.37 1.37 16 41 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 42 H 0.11 2.99 5.68 -51.93 -0.30 2.69 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.02 0.52 6.50 -51.93 -0.34 0.19 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.23 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 381.22 15.07 5.74 5.74 Total: -1.00 -33.39 381.22 -8.64 -42.03 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.55 Total: 2.71 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -1.66 Total: 0.77 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -0.30 Total: -57.65 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.16 Total: -11.19 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.39 -8.64 -42.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979670491.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.335 kcal (2) G-P(sol) polarization free energy of solvation -33.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds