Wall clock time and date at job start Tue Mar 31 2020 18:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 N 1.29938 * 125.38221 * 89.71383 * 3 2 1 5 5 C 1.36068 * 108.47623 * 179.87706 * 4 3 2 6 6 C 1.47417 * 126.44760 * 180.15687 * 5 4 3 7 7 O 1.21609 * 120.00411 * 180.27647 * 6 5 4 8 8 N 1.34785 * 119.99888 * 0.26661 * 6 5 4 9 9 C 1.46504 * 119.99692 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.70986 * 35.60297 * 9 8 6 11 11 C 1.53303 * 109.71246 * 275.00014 * 9 8 6 12 12 C 1.52622 * 108.50026 * 176.53192 * 11 9 8 13 13 C 1.52987 * 110.93404 * 62.21315 * 12 11 9 14 14 H 1.08996 * 112.42782 * 73.37520 * 13 12 11 15 15 C 1.55840 * 106.37186 * 198.10586 * 13 12 11 16 16 N 1.47623 * 104.47094 * 77.05191 * 15 13 12 17 17 C 1.36937 * 125.72346 * 204.83043 * 16 15 13 18 18 H 1.07997 * 119.99480 * 180.02562 * 17 16 15 19 19 C 1.38807 * 120.00261 * 0.04739 * 17 16 15 20 20 N 1.31621 * 119.99981 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00101 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47044 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47479 * 119.99629 * 21 19 17 24 24 H 1.48506 * 109.47065 * 239.99887 * 21 19 17 25 25 C 1.47421 * 108.54663 * 24.87063 * 16 15 13 26 26 C 1.53381 * 106.51751 * 359.32958 * 25 16 15 27 27 H 1.08999 * 108.15189 * 91.62090 * 26 25 16 28 28 C 1.50893 * 113.07614 * 212.47314 * 26 25 16 29 29 C 1.36092 * 107.10489 * 0.38555 * 5 4 3 30 30 O 1.34055 * 125.37593 * 270.02471 * 3 2 1 31 31 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 32 32 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 34 34 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 35 35 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 36 36 H 0.96995 * 119.99965 * 0.02562 * 8 6 5 37 37 H 1.08995 * 109.63341 * 296.23457 * 11 9 8 38 38 H 1.08998 * 109.63004 * 56.83094 * 11 9 8 39 39 H 1.09004 * 109.18372 * 182.58213 * 12 11 9 40 40 H 1.09003 * 109.18957 * 301.88587 * 12 11 9 41 41 H 1.08997 * 110.43323 * 195.80663 * 15 13 12 42 42 H 1.09000 * 110.43269 * 318.30817 * 15 13 12 43 43 H 0.96998 * 119.99705 * 180.02562 * 20 19 17 44 44 H 1.09000 * 110.04998 * 240.05938 * 25 16 15 45 45 H 1.09005 * 110.08880 * 118.61665 * 25 16 15 46 46 H 1.09000 * 109.05457 * 305.29615 * 28 26 25 47 47 H 1.08996 * 109.05666 * 186.37347 * 28 26 25 48 48 H 1.07993 * 126.52739 * 179.75117 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2782 2.1319 1.0594 5 6 2.7167 3.3577 0.6637 6 6 3.1108 4.4729 1.5436 7 8 3.4825 5.5257 1.0616 8 7 3.0590 4.3257 2.8824 9 6 3.4501 5.4342 3.7568 10 1 3.1506 6.3806 3.3069 11 6 4.9689 5.4179 3.9644 12 6 5.3557 6.6310 4.8059 13 6 4.7036 6.5677 6.1883 14 1 5.1670 5.8210 6.8330 15 6 4.7650 8.0124 6.7695 16 7 3.6870 8.7380 6.0691 17 6 3.6348 10.0912 5.8662 18 1 2.7982 10.5263 5.3396 19 6 4.6571 10.9036 6.3369 20 7 5.6766 10.3733 6.9787 21 14 4.5855 12.7497 6.0606 22 1 3.3451 13.0915 5.3192 23 1 4.5870 13.4469 7.3718 24 1 5.7678 13.1783 5.2708 25 6 2.6756 7.7613 5.6257 26 6 3.1790 6.3814 6.0671 27 1 2.7686 6.1700 7.0545 28 6 2.7797 5.2757 5.1211 29 6 2.7180 3.3623 -0.6972 30 8 2.2907 2.1526 -1.0930 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5137 0.8901 35 1 1.8934 -0.5139 -0.8900 36 1 2.7627 3.4859 3.2669 37 1 5.2577 4.5045 4.4843 38 1 5.4711 5.4672 2.9983 39 1 6.4393 6.6557 4.9219 40 1 5.0292 7.5384 4.2977 41 1 4.5794 7.9987 7.8435 42 1 5.7318 8.4679 6.5553 43 1 6.3908 10.9410 7.3079 44 1 2.5757 7.7933 4.5408 45 1 1.7158 7.9768 6.0955 46 1 1.6977 5.2928 4.9902 47 1 3.0699 4.3172 5.5513 48 1 3.0074 4.1828 -1.3370 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979670491.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:06 Heat of formation + Delta-G solvation = -25.455850 kcal Electronic energy + Delta-G solvation = -28910.581002 eV Core-core repulsion = 24966.167993 eV Total energy + Delta-G solvation = -3944.413010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.49259 -41.37457 -40.12774 -37.02596 -36.10175 -35.00400 -34.77539 -33.29441 -32.21979 -30.83226 -30.31513 -27.70688 -26.91197 -25.42450 -25.00240 -23.68294 -22.86639 -22.09711 -21.63137 -21.48781 -19.90273 -19.14467 -18.64574 -17.89803 -17.57438 -17.45630 -16.80901 -16.30255 -16.01367 -15.66449 -15.50062 -15.49672 -15.23996 -14.95094 -14.82557 -14.46296 -14.02211 -13.78432 -13.70642 -13.56808 -13.31261 -13.07613 -12.94422 -12.70223 -12.61810 -12.53108 -12.34539 -12.19556 -12.13194 -12.02931 -11.92851 -11.80184 -11.73861 -11.50053 -11.19833 -10.99510 -10.87744 -10.71682 -10.22359 -9.96008 -8.84338 -7.76427 -5.19658 0.03041 0.92373 1.43649 1.44949 1.54283 1.55001 2.00792 2.18204 2.48777 2.81124 3.32176 3.61007 3.68688 3.70200 3.74765 3.77698 4.05260 4.16177 4.22715 4.23720 4.27632 4.31280 4.36831 4.52066 4.55676 4.56856 4.64145 4.66517 4.72525 4.76997 4.92778 5.00914 5.03814 5.06377 5.07734 5.10993 5.16718 5.22722 5.35340 5.36939 5.41831 5.45871 5.51162 5.55982 5.74264 5.87731 6.27945 6.34763 6.57964 7.08627 7.12826 7.80137 8.44724 9.24950 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023142 B = 0.002364 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.651182 B =11842.935201 C =12278.920568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.026 4.026 3 C 0.203 3.797 4 N -0.478 5.478 5 C -0.096 4.096 6 C 0.597 3.403 7 O -0.573 6.573 8 N -0.692 5.692 9 C 0.150 3.850 10 H 0.059 0.941 11 C -0.111 4.111 12 C -0.093 4.093 13 C -0.097 4.097 14 H 0.105 0.895 15 C 0.156 3.844 16 N -0.623 5.623 17 C -0.235 4.235 18 H 0.074 0.926 19 C -0.068 4.068 20 N -0.946 5.946 21 Si 0.976 3.024 22 H -0.270 1.270 23 H -0.290 1.290 24 H -0.292 1.292 25 C 0.133 3.867 26 C -0.077 4.077 27 H 0.081 0.919 28 C -0.096 4.096 29 C 0.022 3.978 30 O -0.195 6.195 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.418 0.582 37 H 0.088 0.912 38 H 0.046 0.954 39 H 0.055 0.945 40 H 0.032 0.968 41 H -0.016 1.016 42 H 0.074 0.926 43 H 0.246 0.754 44 H 0.017 0.983 45 H 0.020 0.980 46 H 0.078 0.922 47 H 0.101 0.899 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.435 -26.957 -13.492 31.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.064 4.064 3 C -0.007 4.007 4 N -0.208 5.208 5 C -0.215 4.215 6 C 0.383 3.617 7 O -0.453 6.453 8 N -0.342 5.342 9 C 0.046 3.954 10 H 0.077 0.923 11 C -0.149 4.149 12 C -0.131 4.131 13 C -0.116 4.116 14 H 0.123 0.877 15 C 0.032 3.968 16 N -0.349 5.349 17 C -0.364 4.364 18 H 0.092 0.908 19 C -0.260 4.260 20 N -0.597 5.597 21 Si 0.805 3.195 22 H -0.195 1.195 23 H -0.217 1.217 24 H -0.219 1.219 25 C 0.008 3.992 26 C -0.096 4.096 27 H 0.100 0.900 28 C -0.134 4.134 29 C -0.052 4.052 30 O -0.081 6.081 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.255 0.745 37 H 0.107 0.893 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.002 0.998 42 H 0.092 0.908 43 H 0.056 0.944 44 H 0.035 0.965 45 H 0.038 0.962 46 H 0.097 0.903 47 H 0.120 0.880 48 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -8.185 -26.237 -13.152 30.469 hybrid contribution 0.199 1.860 -0.392 1.911 sum -7.986 -24.377 -13.544 29.007 Atomic orbital electron populations 1.21793 0.92390 1.04331 1.02185 1.20429 0.97213 0.81524 1.07228 1.27277 0.97823 0.97927 0.77642 1.70713 1.16816 1.02333 1.30940 1.21644 1.11732 0.94550 0.93596 1.17066 0.76956 0.85108 0.82569 1.90846 1.49585 1.28846 1.76037 1.45728 1.66020 1.17739 1.04728 1.20925 0.94871 0.89105 0.90543 0.92316 1.21773 0.94975 0.99007 0.99148 1.21210 0.99518 0.97219 0.95200 1.22509 0.94987 0.97433 0.96699 0.87698 1.22048 0.94115 0.89176 0.91511 1.44871 1.22260 1.02264 1.65458 1.19443 1.04597 0.82704 1.29665 0.90819 1.25575 0.97056 1.02353 1.01029 1.70048 1.11575 1.33917 1.44119 0.85030 0.77370 0.80064 0.77019 1.19485 1.21674 1.21875 1.21437 0.91772 0.89734 0.96291 1.21178 0.95644 0.93141 0.99643 0.90018 1.21100 1.00804 0.99350 0.92131 1.25704 0.97035 0.87062 0.95403 1.84434 1.63271 1.22279 1.38091 0.92557 0.88500 0.93021 0.86137 0.86318 0.74487 0.89346 0.93485 0.92623 0.94883 0.99817 0.90777 0.94408 0.96546 0.96229 0.90344 0.88014 0.73415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.90 71.98 0.71 -0.13 16 2 C -0.03 -0.16 6.56 29.85 0.20 0.03 16 3 C 0.20 3.12 7.56 88.39 0.67 3.79 16 4 N -0.48 -9.76 11.06 -293.03 -3.24 -13.00 16 5 C -0.10 -2.27 6.99 40.41 0.28 -1.99 16 6 C 0.60 17.36 7.78 86.66 0.67 18.04 16 7 O -0.57 -21.07 16.57 -4.06 -0.07 -21.14 16 8 N -0.69 -17.52 5.10 -445.57 -2.27 -19.79 16 9 C 0.15 4.39 2.31 45.04 0.10 4.49 16 10 H 0.06 2.21 6.22 -2.39 -0.01 2.19 16 11 C -0.11 -3.34 5.52 30.57 0.17 -3.17 16 12 C -0.09 -3.49 4.81 30.46 0.15 -3.34 16 13 C -0.10 -3.56 3.72 -9.46 -0.04 -3.60 16 14 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 15 C 0.16 7.87 5.18 87.15 0.45 8.32 16 16 N -0.62 -33.39 2.93 -690.43 -2.02 -35.41 16 17 C -0.23 -13.84 10.28 84.03 0.86 -12.97 16 18 H 0.07 4.24 7.83 -2.91 -0.02 4.22 16 19 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 20 N -0.95 -58.05 10.09 21.65 0.22 -57.83 16 21 Si 0.98 47.77 29.55 68.60 2.03 49.80 16 22 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 24 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 25 C 0.13 5.73 6.25 86.33 0.54 6.27 16 26 C -0.08 -2.53 2.69 -10.99 -0.03 -2.56 16 27 H 0.08 2.52 8.14 -2.39 -0.02 2.51 16 28 C -0.10 -2.39 4.83 29.85 0.14 -2.24 16 29 C 0.02 0.42 11.95 67.32 0.80 1.22 16 30 O -0.19 -3.21 10.73 0.32 0.00 -3.21 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.42 8.45 8.33 -92.71 -0.77 7.68 16 37 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 38 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.03 1.53 7.16 -2.39 -0.02 1.51 16 41 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 42 H 0.07 4.27 5.68 -2.39 -0.01 4.25 16 43 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 44 H 0.02 0.74 6.50 -2.39 -0.02 0.73 16 45 H 0.02 0.84 8.14 -2.38 -0.02 0.83 16 46 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.25 3.43 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -77.23 381.22 1.00 -76.22 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.20 Total: 15.74 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 6.16 Total: 8.62 kcal Atomic # 7 Polarization: -118.72 SS G_CDS: -7.32 Total: -126.04 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.06 Total: -24.35 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -77.23 1.00 -76.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979670491.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.768 kcal (2) G-P(sol) polarization free energy of solvation -77.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds