Wall clock time and date at job start Tue Mar 31 2020 17:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.47193 * 2 1 4 4 N 1.30013 * 127.33462 * 269.95641 * 3 2 1 5 5 O 1.20663 * 112.29990 * 180.02562 * 4 3 2 6 6 C 1.33494 * 113.15198 * 359.71717 * 5 4 3 7 7 C 1.37358 * 106.34649 * 0.44969 * 6 5 4 8 8 C 1.47398 * 128.56554 * 179.85110 * 7 6 5 9 9 O 1.21611 * 119.99932 * 179.67873 * 8 7 6 10 10 N 1.34778 * 120.00068 * 359.68748 * 8 7 6 11 11 C 1.46499 * 120.00024 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.26435 * 34.50373 * 11 10 8 13 13 C 1.51190 * 109.26874 * 274.99814 * 11 10 8 14 14 C 1.49313 * 116.94382 * 272.66492 * 13 11 10 15 15 C 1.49192 * 121.14047 * 359.73653 * 14 13 11 16 16 H 1.09006 * 107.85095 * 121.85370 * 15 14 13 17 17 C 1.54377 * 111.10139 * 240.54465 * 15 14 13 18 18 N 1.46882 * 106.25899 * 154.33398 * 17 15 14 19 19 C 1.36945 * 125.36591 * 162.03047 * 18 17 15 20 20 H 1.07997 * 119.99756 * 179.69413 * 19 18 17 21 21 C 1.38805 * 119.99878 * 359.69319 * 19 18 17 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.46795 * 109.27090 * 341.76524 * 18 17 15 28 28 C 1.52591 * 116.85564 * 359.63127 * 15 14 13 29 29 H 1.08997 * 110.47302 * 91.64306 * 28 15 14 30 30 C 1.52805 * 110.38578 * 328.36244 * 28 15 14 31 31 H 1.09005 * 109.47037 * 300.00003 * 1 2 3 32 32 H 1.09002 * 109.46970 * 59.99484 * 1 2 3 33 33 H 1.08992 * 109.47643 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47037 * 239.99997 * 2 1 3 35 35 H 1.09005 * 109.47330 * 120.00143 * 2 1 3 36 36 H 1.08003 * 126.82661 * 180.31701 * 6 5 4 37 37 H 0.96999 * 119.99611 * 359.97438 * 10 8 7 38 38 H 1.08995 * 107.95593 * 150.78369 * 13 11 10 39 39 H 1.09000 * 107.95653 * 34.55131 * 13 11 10 40 40 H 1.09001 * 107.08271 * 236.74322 * 14 13 11 41 41 H 1.08999 * 107.07793 * 122.73678 * 14 13 11 42 42 H 1.08997 * 110.23257 * 35.08240 * 17 15 14 43 43 H 1.08997 * 110.01725 * 273.47020 * 17 15 14 44 44 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 45 45 H 1.09000 * 109.83117 * 120.81107 * 27 18 17 46 46 H 1.08993 * 109.83766 * 241.70817 * 27 18 17 47 47 H 1.08999 * 109.84127 * 183.67147 * 30 28 15 48 48 H 1.09000 * 109.84011 * 304.64640 * 30 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2959 2.1640 -1.0337 5 8 2.6846 3.2626 -0.7207 6 6 2.7412 3.4425 0.6008 7 6 2.3294 2.2620 1.1697 8 6 2.2090 1.9237 2.5992 9 8 1.8186 0.8212 2.9324 10 7 2.5315 2.8363 3.5372 11 6 2.4113 2.5002 4.9580 12 1 2.6568 1.4479 5.1007 13 6 0.9899 2.7467 5.4105 14 6 0.6583 4.1253 5.8785 15 6 1.6910 5.2018 5.9006 16 1 1.3324 6.0217 5.2781 17 6 1.9072 5.7354 7.3330 18 7 3.2740 6.2719 7.3700 19 6 3.7598 7.1393 8.3119 20 1 4.7845 7.4760 8.2584 21 6 2.9350 7.5859 9.3351 22 7 1.6861 7.1752 9.4005 23 14 3.5977 8.7685 10.6202 24 1 2.5258 9.0908 11.5961 25 1 4.7406 8.1393 11.3294 26 1 4.0534 10.0163 9.9564 27 6 4.0392 5.7269 6.2421 28 6 3.0928 4.8220 5.4325 29 1 3.2032 5.0129 4.3651 30 6 3.3862 3.3593 5.7631 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.0513 4.3376 1.1196 37 1 2.8431 3.7155 3.2714 38 1 0.7712 2.0543 6.2234 39 1 0.3262 2.5050 4.5803 40 1 0.2693 4.0343 6.8927 41 1 -0.1648 4.4839 5.2605 42 1 1.8029 4.9267 8.0562 43 1 1.1888 6.5262 7.5489 44 1 1.1099 7.4870 10.1158 45 1 4.4009 6.5403 5.6131 46 1 4.8819 5.1442 6.6139 47 1 4.4114 3.1154 5.4843 48 1 3.2402 3.1844 6.8290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980156245.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:25 Heat of formation + Delta-G solvation = 41.669344 kcal Electronic energy + Delta-G solvation = -29396.332718 eV Core-core repulsion = 25454.830475 eV Total energy + Delta-G solvation = -3941.502243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -45.18892 -40.40509 -38.76025 -35.88189 -35.32502 -33.67625 -32.51063 -32.14556 -31.49072 -30.50545 -29.29460 -26.55909 -25.34233 -24.95642 -24.36438 -22.48682 -21.43385 -21.22046 -20.74569 -20.17581 -18.51104 -17.96315 -17.69089 -16.87974 -16.82028 -15.96270 -15.72523 -15.34842 -14.94134 -14.59173 -14.47078 -14.16915 -13.96746 -13.66108 -13.59840 -13.23723 -12.91157 -12.74633 -12.42058 -12.21971 -11.98613 -11.93556 -11.83333 -11.56038 -11.32882 -11.17922 -11.00434 -10.98128 -10.74761 -10.52093 -10.24312 -10.15823 -10.06635 -10.05599 -10.02759 -9.82521 -9.45699 -9.35218 -9.07093 -8.62923 -6.84477 -5.70141 -3.08675 0.78049 1.52582 2.62390 3.03172 3.06959 3.38201 3.42742 3.43883 3.73172 3.98771 4.46988 4.54528 4.64644 4.86840 4.90420 4.92300 4.99025 5.03404 5.09171 5.18807 5.28599 5.33980 5.42707 5.47955 5.58064 5.63290 5.65182 5.74376 5.82634 5.87043 5.89129 5.94643 5.98452 6.15129 6.25240 6.32047 6.38587 6.46847 6.60028 6.65203 6.73660 6.85726 6.92223 7.34360 7.52681 7.62844 7.83598 7.90627 8.03146 8.31359 9.20931 9.81701 10.45657 11.36144 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025757 B = 0.002523 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.834587 B =11096.632652 C =11599.820961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C 0.073 3.927 4 N -0.360 5.360 5 O 0.097 5.903 6 C -0.006 4.006 7 C -0.251 4.251 8 C 0.593 3.407 9 O -0.530 6.530 10 N -0.713 5.713 11 C 0.154 3.846 12 H 0.088 0.912 13 C -0.117 4.117 14 C -0.101 4.101 15 C -0.104 4.104 16 H 0.056 0.944 17 C 0.172 3.828 18 N -0.604 5.604 19 C -0.226 4.226 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.913 3.087 24 H -0.290 1.290 25 H -0.285 1.285 26 H -0.285 1.285 27 C 0.141 3.859 28 C -0.087 4.087 29 H 0.060 0.940 30 C -0.114 4.114 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.226 0.774 37 H 0.398 0.602 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.045 0.955 42 H 0.016 0.984 43 H 0.088 0.912 44 H 0.252 0.748 45 H 0.019 0.981 46 H 0.023 0.977 47 H 0.067 0.933 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.217 -10.806 -17.242 20.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 C -0.090 4.090 4 N -0.066 5.066 5 O 0.038 5.962 6 C -0.088 4.088 7 C -0.258 4.258 8 C 0.379 3.621 9 O -0.408 6.408 10 N -0.365 5.365 11 C 0.051 3.949 12 H 0.106 0.894 13 C -0.155 4.155 14 C -0.139 4.139 15 C -0.123 4.123 16 H 0.075 0.925 17 C 0.047 3.953 18 N -0.330 5.330 19 C -0.354 4.354 20 H 0.094 0.906 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.212 1.212 26 H -0.212 1.212 27 C 0.015 3.985 28 C -0.106 4.106 29 H 0.078 0.922 30 C -0.151 4.151 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.242 0.758 37 H 0.234 0.766 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.106 0.894 44 H 0.063 0.937 45 H 0.037 0.963 46 H 0.041 0.959 47 H 0.085 0.915 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.651 -11.631 -18.102 21.526 hybrid contribution 0.453 1.225 1.461 1.960 sum -0.198 -10.405 -16.641 19.627 Atomic orbital electron populations 1.21662 0.93579 1.02513 1.02255 1.20049 0.96788 0.87308 1.04374 1.24890 0.98943 0.98898 0.86301 1.73679 1.16660 0.92666 1.23620 1.84583 1.61947 1.26674 1.23032 1.26470 0.98187 1.00083 0.84109 1.22437 1.12367 0.95158 0.95866 1.16834 0.77638 0.84649 0.82983 1.90784 1.46320 1.21824 1.81879 1.46204 1.67281 1.16398 1.06661 1.20661 0.95805 1.00098 0.78370 0.89379 1.20781 0.96008 0.97603 1.01146 1.19855 0.98450 0.93560 1.02079 1.21114 0.93049 0.96763 1.01419 0.92538 1.21719 0.87949 0.97383 0.88271 1.44274 1.08390 1.52334 1.27961 1.19013 0.95869 1.17981 1.02576 0.90592 1.24788 0.96095 1.00636 0.99015 1.69874 1.05457 1.47713 1.33994 0.86179 0.77564 0.80760 0.81148 1.21596 1.21210 1.21183 1.21259 0.93632 0.93968 0.89678 1.21465 0.96676 0.94552 0.97931 0.92187 1.21798 0.97784 0.94438 1.01118 0.91971 0.92793 0.91466 0.90116 0.88094 0.75763 0.76555 0.91595 0.92306 0.91889 0.93596 0.96565 0.89372 0.93708 0.96264 0.95924 0.91462 0.89318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.89 37.16 0.37 -0.90 16 2 C -0.05 -0.46 6.20 -27.88 -0.17 -0.63 16 3 C 0.07 0.80 6.84 -79.76 -0.55 0.26 16 4 N -0.36 -4.08 12.01 34.78 0.42 -3.66 16 5 O 0.10 0.93 11.06 18.65 0.21 1.13 16 6 C -0.01 -0.05 11.85 30.41 0.36 0.31 16 7 C -0.25 -2.61 6.47 -102.89 -0.67 -3.28 16 8 C 0.59 7.08 7.56 -12.53 -0.09 6.98 16 9 O -0.53 -7.83 15.34 5.27 0.08 -7.75 16 10 N -0.71 -7.54 4.89 -55.85 -0.27 -7.82 16 11 C 0.15 1.87 2.77 -68.91 -0.19 1.68 16 12 H 0.09 1.12 7.55 -51.93 -0.39 0.73 16 13 C -0.12 -1.52 5.46 -29.46 -0.16 -1.68 16 14 C -0.10 -1.49 5.40 -30.42 -0.16 -1.66 16 15 C -0.10 -1.76 2.88 -91.98 -0.26 -2.02 16 16 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 17 C 0.17 3.92 4.91 -3.11 -0.02 3.91 16 18 N -0.60 -14.71 3.39 -171.27 -0.58 -15.29 16 19 C -0.23 -6.12 10.25 -15.06 -0.15 -6.28 16 20 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 21 C -0.01 -0.26 5.48 -17.43 -0.10 -0.36 16 22 N -0.92 -26.33 10.17 55.49 0.56 -25.77 16 23 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.14 2.69 6.84 -3.39 -0.02 2.67 16 28 C -0.09 -1.29 2.72 -90.44 -0.25 -1.53 16 29 H 0.06 0.71 6.16 -51.93 -0.32 0.39 16 30 C -0.11 -1.50 4.71 -26.90 -0.13 -1.62 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 1.05 7.11 -51.93 -0.37 0.68 16 36 H 0.23 0.74 7.68 -52.48 -0.40 0.34 16 37 H 0.40 3.43 5.62 -40.82 -0.23 3.20 16 38 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 39 H 0.06 0.78 7.77 -51.93 -0.40 0.37 16 40 H 0.06 1.02 7.20 -51.93 -0.37 0.64 16 41 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16 42 H 0.02 0.41 7.70 -51.93 -0.40 0.01 16 43 H 0.09 2.32 6.23 -51.93 -0.32 2.00 16 44 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.02 0.43 7.72 -51.93 -0.40 0.03 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 376.15 15.07 5.67 5.67 Total: -1.00 -31.89 376.15 -8.51 -40.41 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -7.38 Total: 0.56 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -2.19 Total: -4.15 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.13 Total: -52.53 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: 0.29 Total: -6.61 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.89 -8.51 -40.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980156245.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.076 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds