Wall clock time and date at job start Tue Mar 31 2020 17:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.47193 * 2 1 4 4 N 1.30013 * 127.33462 * 269.95641 * 3 2 1 5 5 O 1.20663 * 112.29990 * 180.02562 * 4 3 2 6 6 C 1.33494 * 113.15198 * 359.71717 * 5 4 3 7 7 C 1.37358 * 106.34649 * 0.44969 * 6 5 4 8 8 C 1.47398 * 128.56554 * 179.85110 * 7 6 5 9 9 O 1.21611 * 119.99932 * 179.67873 * 8 7 6 10 10 N 1.34778 * 120.00068 * 359.68748 * 8 7 6 11 11 C 1.46499 * 120.00024 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.26435 * 34.50373 * 11 10 8 13 13 C 1.51190 * 109.26874 * 274.99814 * 11 10 8 14 14 C 1.49313 * 116.94382 * 272.66492 * 13 11 10 15 15 C 1.49192 * 121.14047 * 359.73653 * 14 13 11 16 16 H 1.09006 * 107.85095 * 121.85370 * 15 14 13 17 17 C 1.54377 * 111.10139 * 240.54465 * 15 14 13 18 18 N 1.46882 * 106.25899 * 154.33398 * 17 15 14 19 19 C 1.36945 * 125.36591 * 162.03047 * 18 17 15 20 20 H 1.07997 * 119.99756 * 179.69413 * 19 18 17 21 21 C 1.38805 * 119.99878 * 359.69319 * 19 18 17 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.46795 * 109.27090 * 341.76524 * 18 17 15 28 28 C 1.52591 * 116.85564 * 359.63127 * 15 14 13 29 29 H 1.08997 * 110.47302 * 91.64306 * 28 15 14 30 30 C 1.52805 * 110.38578 * 328.36244 * 28 15 14 31 31 H 1.09005 * 109.47037 * 300.00003 * 1 2 3 32 32 H 1.09002 * 109.46970 * 59.99484 * 1 2 3 33 33 H 1.08992 * 109.47643 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47037 * 239.99997 * 2 1 3 35 35 H 1.09005 * 109.47330 * 120.00143 * 2 1 3 36 36 H 1.08003 * 126.82661 * 180.31701 * 6 5 4 37 37 H 0.96999 * 119.99611 * 359.97438 * 10 8 7 38 38 H 1.08995 * 107.95593 * 150.78369 * 13 11 10 39 39 H 1.09000 * 107.95653 * 34.55131 * 13 11 10 40 40 H 1.09001 * 107.08271 * 236.74322 * 14 13 11 41 41 H 1.08999 * 107.07793 * 122.73678 * 14 13 11 42 42 H 1.08997 * 110.23257 * 35.08240 * 17 15 14 43 43 H 1.08997 * 110.01725 * 273.47020 * 17 15 14 44 44 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 45 45 H 1.09000 * 109.83117 * 120.81107 * 27 18 17 46 46 H 1.08993 * 109.83766 * 241.70817 * 27 18 17 47 47 H 1.08999 * 109.84127 * 183.67147 * 30 28 15 48 48 H 1.09000 * 109.84011 * 304.64640 * 30 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2959 2.1640 -1.0337 5 8 2.6846 3.2626 -0.7207 6 6 2.7412 3.4425 0.6008 7 6 2.3294 2.2620 1.1697 8 6 2.2090 1.9237 2.5992 9 8 1.8186 0.8212 2.9324 10 7 2.5315 2.8363 3.5372 11 6 2.4113 2.5002 4.9580 12 1 2.6568 1.4479 5.1007 13 6 0.9899 2.7467 5.4105 14 6 0.6583 4.1253 5.8785 15 6 1.6910 5.2018 5.9006 16 1 1.3324 6.0217 5.2781 17 6 1.9072 5.7354 7.3330 18 7 3.2740 6.2719 7.3700 19 6 3.7598 7.1393 8.3119 20 1 4.7845 7.4760 8.2584 21 6 2.9350 7.5859 9.3351 22 7 1.6861 7.1752 9.4005 23 14 3.5977 8.7685 10.6202 24 1 2.5258 9.0908 11.5961 25 1 4.7406 8.1393 11.3294 26 1 4.0534 10.0163 9.9564 27 6 4.0392 5.7269 6.2421 28 6 3.0928 4.8220 5.4325 29 1 3.2032 5.0129 4.3651 30 6 3.3862 3.3593 5.7631 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.0513 4.3376 1.1196 37 1 2.8431 3.7155 3.2714 38 1 0.7712 2.0543 6.2234 39 1 0.3262 2.5050 4.5803 40 1 0.2693 4.0343 6.8927 41 1 -0.1648 4.4839 5.2605 42 1 1.8029 4.9267 8.0562 43 1 1.1888 6.5262 7.5489 44 1 1.1099 7.4870 10.1158 45 1 4.4009 6.5403 5.6131 46 1 4.8819 5.1442 6.6139 47 1 4.4114 3.1154 5.4843 48 1 3.2402 3.1844 6.8290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980156245.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:23 Heat of formation + Delta-G solvation = 22.199151 kcal Electronic energy + Delta-G solvation = -29397.177009 eV Core-core repulsion = 25454.830475 eV Total energy + Delta-G solvation = -3942.346534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.93637 -41.50682 -39.94815 -37.18816 -36.15866 -34.92866 -33.92082 -33.26456 -32.23244 -31.78727 -30.82558 -27.99342 -26.92679 -26.04308 -25.11100 -23.78936 -22.61880 -22.13696 -21.83826 -21.52808 -19.33610 -18.89535 -18.77789 -18.71415 -17.62270 -17.19349 -16.89328 -16.54614 -16.17255 -15.80297 -15.46001 -15.35459 -15.07363 -15.01238 -14.65310 -14.28446 -14.16744 -13.80883 -13.71668 -13.61988 -13.38537 -12.97241 -12.85610 -12.73787 -12.65314 -12.62837 -12.51593 -12.30235 -12.07483 -11.91291 -11.82764 -11.66184 -11.22767 -11.14780 -10.97911 -10.88642 -10.77825 -10.77200 -10.63167 -10.03238 -8.82075 -7.77184 -5.17238 0.10839 0.75298 1.47144 1.49625 1.55943 1.90184 2.18647 2.31654 2.51761 3.00273 3.30839 3.35043 3.66275 3.70046 3.79458 3.81098 3.85427 4.01513 4.13228 4.19634 4.23949 4.32324 4.34047 4.39599 4.45918 4.56342 4.61129 4.69455 4.75321 4.86645 4.94272 4.95947 4.99880 5.10489 5.13444 5.16012 5.19384 5.22219 5.26546 5.42075 5.47301 5.51962 5.58853 5.63259 5.76375 5.91168 6.32086 6.51840 7.15834 7.16879 7.22807 7.85937 8.47116 9.26882 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025757 B = 0.002523 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.834587 B =11096.632652 C =11599.820961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.048 4.048 3 C 0.059 3.941 4 N -0.380 5.380 5 O 0.096 5.904 6 C 0.028 3.972 7 C -0.279 4.279 8 C 0.598 3.402 9 O -0.564 6.564 10 N -0.701 5.701 11 C 0.165 3.835 12 H 0.087 0.913 13 C -0.111 4.111 14 C -0.092 4.092 15 C -0.088 4.088 16 H 0.060 0.940 17 C 0.179 3.821 18 N -0.627 5.627 19 C -0.238 4.238 20 H 0.081 0.919 21 C -0.068 4.068 22 N -0.950 5.950 23 Si 0.976 3.024 24 H -0.297 1.297 25 H -0.279 1.279 26 H -0.276 1.276 27 C 0.132 3.868 28 C -0.074 4.074 29 H 0.106 0.894 30 C -0.105 4.105 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.273 0.727 37 H 0.411 0.589 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.040 0.960 41 H 0.059 0.941 42 H -0.018 1.018 43 H 0.046 0.954 44 H 0.245 0.755 45 H 0.029 0.971 46 H 0.026 0.974 47 H 0.089 0.911 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.083 -10.509 -19.305 22.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.086 4.086 3 C -0.104 4.104 4 N -0.088 5.088 5 O 0.038 5.962 6 C -0.054 4.054 7 C -0.286 4.286 8 C 0.385 3.615 9 O -0.444 6.444 10 N -0.354 5.354 11 C 0.061 3.939 12 H 0.105 0.895 13 C -0.149 4.149 14 C -0.131 4.131 15 C -0.107 4.107 16 H 0.079 0.921 17 C 0.054 3.946 18 N -0.353 5.353 19 C -0.367 4.367 20 H 0.099 0.901 21 C -0.261 4.261 22 N -0.600 5.600 23 Si 0.804 3.196 24 H -0.223 1.223 25 H -0.205 1.205 26 H -0.202 1.202 27 C 0.007 3.993 28 C -0.093 4.093 29 H 0.124 0.876 30 C -0.143 4.143 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.288 0.712 37 H 0.249 0.751 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.000 1.000 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.047 0.953 46 H 0.044 0.956 47 H 0.107 0.893 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.685 -11.320 -20.206 23.171 hybrid contribution 0.086 1.162 2.106 2.407 sum 0.771 -10.158 -18.100 20.770 Atomic orbital electron populations 1.21614 0.93170 1.03250 1.01406 1.20064 0.97116 0.87086 1.04329 1.25163 0.99000 0.99475 0.86764 1.73687 1.17658 0.93324 1.24093 1.84561 1.61581 1.26039 1.24040 1.27263 0.94816 1.00252 0.83055 1.22311 1.14936 0.96489 0.94906 1.16959 0.76819 0.84152 0.83587 1.90774 1.47898 1.23294 1.82449 1.45982 1.67001 1.16799 1.05648 1.20419 0.94635 0.99778 0.79081 0.89534 1.20707 0.96891 0.96141 1.01199 1.19753 0.98027 0.94099 1.01182 1.20926 0.95151 0.97500 0.97164 0.92138 1.21449 0.86790 0.94972 0.91437 1.44600 1.09609 1.52182 1.28871 1.19418 0.96123 1.17991 1.03167 0.90104 1.25607 0.96495 1.02714 1.01282 1.70143 1.06509 1.49011 1.34310 0.85188 0.76747 0.79018 0.78617 1.22300 1.20534 1.20205 1.21527 0.94218 0.94868 0.88646 1.21475 0.93605 0.94484 0.99759 0.87563 1.21696 0.99331 0.93474 0.99815 0.93592 0.92685 0.90008 0.89064 0.89145 0.71158 0.75064 0.91726 0.91989 0.94129 0.92264 0.99988 0.93546 0.94592 0.95292 0.95587 0.89254 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.89 71.98 0.71 -1.62 16 2 C -0.05 -0.89 6.20 29.85 0.18 -0.70 16 3 C 0.06 1.21 6.84 45.16 0.31 1.52 16 4 N -0.38 -7.91 12.01 -44.77 -0.54 -8.44 16 5 O 0.10 1.55 11.06 76.97 0.85 2.40 16 6 C 0.03 0.31 11.85 67.61 0.80 1.11 16 7 C -0.28 -5.05 6.47 -18.75 -0.12 -5.18 16 8 C 0.60 12.74 7.56 86.65 0.65 13.40 16 9 O -0.56 -15.91 15.34 -4.07 -0.06 -15.97 16 10 N -0.70 -12.25 4.89 -448.87 -2.20 -14.45 16 11 C 0.17 3.59 2.77 44.35 0.12 3.71 16 12 H 0.09 2.01 7.55 -2.39 -0.02 2.00 16 13 C -0.11 -2.70 5.46 28.83 0.16 -2.54 16 14 C -0.09 -2.64 5.40 28.20 0.15 -2.48 16 15 C -0.09 -2.86 2.88 -11.68 -0.03 -2.90 16 16 H 0.06 1.95 8.12 -2.38 -0.02 1.93 16 17 C 0.18 8.42 4.91 86.77 0.43 8.85 16 18 N -0.63 -30.73 3.39 -695.78 -2.36 -33.09 16 19 C -0.24 -13.00 10.25 84.03 0.86 -12.14 16 20 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 21 C -0.07 -3.84 5.48 84.86 0.47 -3.38 16 22 N -0.95 -56.42 10.17 21.65 0.22 -56.19 16 23 Si 0.98 45.19 29.55 68.60 2.03 47.22 16 24 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 27 C 0.13 4.79 6.84 86.64 0.59 5.38 16 28 C -0.07 -1.97 2.72 -10.68 -0.03 -2.00 16 29 H 0.11 1.90 6.16 -2.39 -0.01 1.89 16 30 C -0.11 -2.51 4.71 30.48 0.14 -2.37 16 31 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 34 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.09 1.86 7.11 -2.38 -0.02 1.84 16 36 H 0.27 0.05 7.68 -2.91 -0.02 0.03 16 37 H 0.41 4.89 5.62 -92.71 -0.52 4.37 16 38 H 0.06 1.60 8.12 -2.39 -0.02 1.58 16 39 H 0.06 1.51 7.77 -2.39 -0.02 1.49 16 40 H 0.04 1.34 7.20 -2.39 -0.02 1.32 16 41 H 0.06 1.54 8.08 -2.39 -0.02 1.52 16 42 H -0.02 -0.94 7.70 -2.39 -0.02 -0.96 16 43 H 0.05 2.57 6.23 -2.39 -0.01 2.55 16 44 H 0.24 14.24 8.31 -92.71 -0.77 13.47 16 45 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.03 0.94 7.72 -2.39 -0.02 0.92 16 47 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -73.19 376.15 3.80 -69.39 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 0.45 Total: 10.48 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 5.40 Total: -1.33 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -4.87 Total: -112.18 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.79 Total: -13.57 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -73.19 3.80 -69.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980156245.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.591 kcal (2) G-P(sol) polarization free energy of solvation -73.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds