Wall clock time and date at job start Tue Mar 31 2020 17:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46979 * 2 1 4 4 C 1.35322 * 126.66263 * 89.70906 * 3 2 1 5 5 C 1.42268 * 103.91957 * 180.26212 * 4 3 2 6 6 C 1.48328 * 126.94131 * 180.02562 * 5 4 3 7 7 O 1.21497 * 119.99518 * 359.97114 * 6 5 4 8 8 N 1.34772 * 120.00549 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00454 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.02711 * 33.96385 * 9 8 6 11 11 C 1.52529 * 109.04655 * 275.00284 * 9 8 6 12 12 C 1.53819 * 111.70880 * 293.49173 * 11 9 8 13 13 C 1.51618 * 107.02765 * 302.45721 * 12 11 9 14 14 H 1.09000 * 110.51409 * 304.77506 * 13 12 11 15 15 C 1.53068 * 116.66656 * 176.22333 * 13 12 11 16 16 N 1.48654 * 103.44522 * 204.13447 * 15 13 12 17 17 C 1.36936 * 125.78307 * 204.37411 * 16 15 13 18 18 H 1.08001 * 120.00487 * 180.02562 * 17 16 15 19 19 C 1.38818 * 120.00087 * 0.02562 * 17 16 15 20 20 N 1.31622 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00245 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47140 * 59.99806 * 21 19 17 23 23 H 1.48501 * 109.47175 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46771 * 299.99981 * 21 19 17 25 25 C 1.48239 * 108.43624 * 24.37615 * 16 15 13 26 26 C 1.52327 * 105.86132 * 3.18647 * 25 16 15 27 27 H 1.08994 * 110.22514 * 87.80662 * 26 25 16 28 28 C 1.51443 * 117.46551 * 214.65243 * 26 25 16 29 29 N 1.30996 * 106.12420 * 0.02562 * 5 4 3 30 30 O 1.20899 * 111.43755 * 0.02562 * 29 5 4 31 31 H 1.09003 * 109.47150 * 299.99833 * 1 2 3 32 32 H 1.09003 * 109.47236 * 60.00263 * 1 2 3 33 33 H 1.09001 * 109.46894 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47150 * 240.00167 * 2 1 3 35 35 H 1.08996 * 109.46686 * 120.00104 * 2 1 3 36 36 H 1.07999 * 128.03809 * 0.26399 * 4 3 2 37 37 H 0.96997 * 119.99873 * 359.97438 * 8 6 5 38 38 H 1.09007 * 109.03178 * 54.06122 * 11 9 8 39 39 H 1.09000 * 109.03423 * 172.91434 * 11 9 8 40 40 H 1.08993 * 109.94040 * 61.83239 * 12 11 9 41 41 H 1.08994 * 109.94104 * 182.99660 * 12 11 9 42 42 H 1.08997 * 110.62430 * 322.62505 * 15 13 12 43 43 H 1.08997 * 110.62498 * 85.64226 * 15 13 12 44 44 H 0.96999 * 119.99790 * 180.02562 * 20 19 17 45 45 H 1.09005 * 110.17297 * 244.08902 * 25 16 15 46 46 H 1.08999 * 110.23777 * 122.31953 * 25 16 15 47 47 H 1.08997 * 109.94045 * 59.42548 * 28 26 25 48 48 H 1.09001 * 109.93954 * 298.19001 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2964 2.1845 1.0855 5 6 2.7304 3.4227 0.5355 6 6 3.1516 4.6319 1.2842 7 8 3.1467 4.6264 2.4991 8 7 3.5398 5.7366 0.6168 9 6 3.9552 6.9311 1.3563 10 1 4.4552 6.6243 2.2750 11 6 2.7194 7.7511 1.7122 12 6 2.0406 8.3302 0.4592 13 6 3.0787 9.1683 -0.2609 14 1 3.4930 9.9218 0.4091 15 6 2.6586 9.7821 -1.5987 16 7 3.9502 9.9890 -2.3049 17 6 4.1825 10.9034 -3.2974 18 1 5.1614 10.9741 -3.7482 19 6 3.1599 11.7396 -3.7241 20 7 1.9671 11.6538 -3.1744 21 14 3.4766 12.9864 -5.0786 22 1 3.9005 12.2789 -6.3135 23 1 2.2323 13.7506 -5.3487 24 1 4.5488 13.9205 -4.6505 25 6 4.9440 9.0378 -1.7527 26 6 4.1885 8.1879 -0.7392 27 1 3.7360 7.3274 -1.2319 28 6 4.9423 7.7371 0.4945 29 7 2.6830 3.2793 -0.7658 30 8 2.2974 2.1760 -1.0750 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.2002 1.9163 2.1272 37 1 3.5440 5.7408 -0.3531 38 1 2.0091 7.1134 2.2386 39 1 3.0132 8.5706 2.3681 40 1 1.7022 7.5210 -0.1878 41 1 1.1943 8.9529 0.7491 42 1 2.0231 9.0928 -2.1546 43 1 2.1499 10.7333 -1.4418 44 1 1.2524 12.2378 -3.4728 45 1 5.7511 9.5808 -1.2607 46 1 5.3449 8.4081 -2.5469 47 1 5.2985 8.6045 1.0501 48 1 5.7842 7.1076 0.2063 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980212069.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:43 Heat of formation + Delta-G solvation = 22.840294 kcal Electronic energy + Delta-G solvation = -29049.857437 eV Core-core repulsion = 25107.538706 eV Total energy + Delta-G solvation = -3942.318732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.18496 -41.62709 -40.07694 -37.22887 -35.85128 -35.15033 -34.65639 -33.48816 -32.08116 -31.13729 -30.57351 -27.96910 -27.03134 -25.92222 -24.95483 -23.62961 -23.54366 -22.03111 -21.54020 -21.50829 -20.17393 -18.94851 -18.80290 -18.60194 -17.99511 -17.18616 -16.78484 -16.39510 -16.00914 -15.65647 -15.50463 -15.42653 -15.25676 -14.88734 -14.79085 -14.37879 -14.25720 -13.96602 -13.54584 -13.49710 -13.45891 -13.08931 -12.88855 -12.81709 -12.69316 -12.60894 -12.41248 -12.40259 -12.03723 -11.97746 -11.85390 -11.74891 -11.58760 -11.48424 -11.44044 -11.05338 -10.82934 -10.72518 -10.48240 -10.18285 -8.89427 -7.77198 -5.21193 0.00782 0.63825 1.44702 1.48247 1.54558 1.78285 1.99544 2.04530 2.48705 2.85191 3.32116 3.43691 3.52026 3.58823 3.68187 3.78455 3.89953 4.06244 4.09058 4.16981 4.30409 4.35411 4.37923 4.42938 4.44796 4.54773 4.65545 4.71266 4.73388 4.79732 4.86927 4.94729 4.97459 5.01521 5.04751 5.06706 5.12121 5.14447 5.22240 5.33220 5.40220 5.40793 5.44665 5.52802 5.71058 5.82090 6.22208 6.28172 6.83753 7.01512 7.08390 7.75651 8.42518 9.24929 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016451 B = 0.002595 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.643980 B =10786.221444 C =11661.841905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.040 4.040 3 C -0.016 4.016 4 C -0.192 4.192 5 C -0.048 4.048 6 C 0.599 3.401 7 O -0.551 6.551 8 N -0.701 5.701 9 C 0.153 3.847 10 H 0.098 0.902 11 C -0.118 4.118 12 C -0.093 4.093 13 C -0.101 4.101 14 H 0.073 0.927 15 C 0.169 3.831 16 N -0.632 5.632 17 C -0.238 4.238 18 H 0.080 0.920 19 C -0.071 4.071 20 N -0.950 5.950 21 Si 0.980 3.020 22 H -0.280 1.280 23 H -0.294 1.294 24 H -0.276 1.276 25 C 0.138 3.862 26 C -0.092 4.092 27 H 0.060 0.940 28 C -0.098 4.098 29 N -0.353 5.353 30 O 0.122 5.878 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.124 0.876 36 H 0.195 0.805 37 H 0.407 0.593 38 H 0.061 0.939 39 H 0.089 0.911 40 H 0.048 0.952 41 H 0.063 0.937 42 H -0.019 1.019 43 H 0.068 0.932 44 H 0.246 0.754 45 H 0.033 0.967 46 H 0.023 0.977 47 H 0.096 0.904 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.247 -24.392 11.333 26.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.078 4.078 3 C -0.079 4.079 4 C -0.215 4.215 5 C -0.206 4.206 6 C 0.383 3.617 7 O -0.428 6.428 8 N -0.353 5.353 9 C 0.050 3.950 10 H 0.116 0.884 11 C -0.157 4.157 12 C -0.131 4.131 13 C -0.121 4.121 14 H 0.092 0.908 15 C 0.044 3.956 16 N -0.358 5.358 17 C -0.367 4.367 18 H 0.098 0.902 19 C -0.263 4.263 20 N -0.600 5.600 21 Si 0.809 3.191 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.201 1.201 25 C 0.014 3.986 26 C -0.111 4.111 27 H 0.079 0.921 28 C -0.136 4.136 29 N -0.053 5.053 30 O 0.046 5.954 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.126 0.874 35 H 0.142 0.858 36 H 0.213 0.787 37 H 0.244 0.756 38 H 0.079 0.921 39 H 0.107 0.893 40 H 0.067 0.933 41 H 0.082 0.918 42 H -0.001 1.001 43 H 0.086 0.914 44 H 0.055 0.945 45 H 0.051 0.949 46 H 0.041 0.959 47 H 0.115 0.885 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.486 -23.329 11.096 25.838 hybrid contribution -0.301 0.781 -0.893 1.224 sum 0.185 -22.548 10.202 24.750 Atomic orbital electron populations 1.21834 0.93038 1.03973 1.02238 1.20437 0.96766 0.83532 1.07031 1.25276 1.00231 0.98192 0.84168 1.22669 1.05425 0.90695 1.02669 1.23613 1.07853 0.98605 0.90536 1.17043 0.76971 0.81483 0.86170 1.90758 1.55221 1.83555 1.13277 1.46182 1.65462 1.12491 1.11144 1.21187 0.94914 0.83435 0.95493 0.88370 1.21864 0.96750 0.99773 0.97270 1.21197 0.97457 0.98024 0.96468 1.22173 0.96851 0.96794 0.96276 0.90842 1.21357 0.87061 0.98374 0.88762 1.45463 1.08179 1.40019 1.42184 1.19437 0.96542 1.10099 1.10611 0.90233 1.25647 0.95619 1.02236 1.02780 1.70079 1.02280 1.42051 1.45580 0.85120 0.76522 0.78657 0.78845 1.20584 1.21980 1.20142 1.21145 0.92188 0.90869 0.94395 1.21671 0.97162 0.96853 0.95457 0.92124 1.21570 0.96970 1.00578 0.94510 1.74234 1.14933 1.00324 1.15838 1.84758 1.59513 1.16777 1.34403 0.92536 0.93056 0.89051 0.87383 0.85837 0.78740 0.75611 0.92053 0.89294 0.93299 0.91823 1.00100 0.91402 0.94460 0.94874 0.95872 0.88522 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 71.98 0.71 -0.23 16 2 C -0.04 -0.23 6.50 29.85 0.19 -0.04 16 3 C -0.02 -0.23 6.73 25.01 0.17 -0.06 16 4 C -0.19 -3.58 10.92 22.60 0.25 -3.33 16 5 C -0.05 -1.21 7.19 42.96 0.31 -0.90 16 6 C 0.60 16.65 7.79 86.93 0.68 17.33 16 7 O -0.55 -17.33 16.58 -3.71 -0.06 -17.39 16 8 N -0.70 -18.27 4.65 -444.34 -2.07 -20.34 16 9 C 0.15 3.73 2.71 45.12 0.12 3.85 16 10 H 0.10 2.30 7.52 -2.38 -0.02 2.29 16 11 C -0.12 -3.03 5.43 30.71 0.17 -2.87 16 12 C -0.09 -2.93 5.57 30.42 0.17 -2.76 16 13 C -0.10 -3.77 2.50 -10.32 -0.03 -3.80 16 14 H 0.07 2.72 8.01 -2.39 -0.02 2.70 16 15 C 0.17 8.55 5.53 85.99 0.48 9.02 16 16 N -0.63 -33.44 3.45 -693.08 -2.39 -35.83 16 17 C -0.24 -13.69 10.30 84.04 0.87 -12.82 16 18 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 19 C -0.07 -4.10 5.49 84.86 0.47 -3.64 16 20 N -0.95 -58.09 10.11 21.65 0.22 -57.87 16 21 Si 0.98 46.67 29.55 68.60 2.03 48.70 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 23 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 C 0.14 5.73 6.98 85.82 0.60 6.33 16 26 C -0.09 -3.06 2.25 -10.62 -0.02 -3.08 16 27 H 0.06 2.06 6.08 -2.39 -0.01 2.04 16 28 C -0.10 -2.41 5.37 30.37 0.16 -2.25 16 29 N -0.35 -9.07 11.84 -49.51 -0.59 -9.66 16 30 O 0.12 2.56 11.18 71.90 0.80 3.36 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.20 2.85 8.06 -2.91 -0.02 2.82 16 37 H 0.41 10.89 6.56 -92.71 -0.61 10.29 16 38 H 0.06 1.63 8.13 -2.38 -0.02 1.61 16 39 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.05 1.61 7.84 -2.39 -0.02 1.60 16 41 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 42 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 43 H 0.07 3.93 5.93 -2.39 -0.01 3.92 16 44 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 45 H 0.03 1.32 8.08 -2.38 -0.02 1.30 16 46 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.10 2.20 8.03 -2.39 -0.02 2.18 16 48 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -73.05 381.63 3.59 -69.47 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.36 Total: 18.81 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 5.28 Total: 0.75 kcal Atomic # 7 Polarization: -118.87 SS G_CDS: -4.83 Total: -123.70 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.74 Total: -14.03 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -73.05 3.59 -69.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980212069.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.307 kcal (2) G-P(sol) polarization free energy of solvation -73.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds