Wall clock time and date at job start Tue Mar 31 2020 17:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47343 * 2 1 4 4 C 1.35312 * 126.66500 * 90.00161 * 3 2 1 5 5 C 1.42268 * 103.92324 * 180.02562 * 4 3 2 6 6 C 1.48333 * 126.94281 * 179.97438 * 5 4 3 7 7 O 1.21493 * 119.99696 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00255 * 179.97438 * 6 5 4 9 9 C 1.46507 * 119.99905 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.02597 * 33.95914 * 9 8 6 11 11 C 1.52521 * 109.04178 * 275.00056 * 9 8 6 12 12 C 1.53806 * 111.70143 * 185.39865 * 11 9 8 13 13 C 1.51619 * 107.02005 * 57.53288 * 12 11 9 14 14 H 1.08992 * 110.50246 * 56.32843 * 13 12 11 15 15 C 1.53064 * 116.67694 * 183.72892 * 13 12 11 16 16 N 1.48672 * 103.44152 * 155.89225 * 15 13 12 17 17 C 1.36938 * 125.78090 * 155.58613 * 16 15 13 18 18 H 1.07995 * 119.99555 * 180.02562 * 17 16 15 19 19 C 1.38805 * 120.00089 * 0.02797 * 17 16 15 20 20 N 1.31622 * 120.00381 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99832 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46965 * 59.99675 * 21 19 17 23 23 H 1.48499 * 109.47137 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47107 * 299.99837 * 21 19 17 25 25 C 1.48236 * 108.42975 * 335.62272 * 16 15 13 26 26 C 1.52333 * 105.87005 * 356.81534 * 25 16 15 27 27 H 1.08995 * 109.88594 * 272.32354 * 26 25 16 28 28 C 1.51443 * 117.44408 * 145.30468 * 26 25 16 29 29 N 1.30984 * 106.12332 * 359.97438 * 5 4 3 30 30 O 1.20905 * 111.44289 * 359.97438 * 29 5 4 31 31 H 1.09001 * 109.46695 * 59.99881 * 1 2 3 32 32 H 1.09003 * 109.47206 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47084 * 300.00067 * 1 2 3 34 34 H 1.09006 * 109.46899 * 240.00151 * 2 1 3 35 35 H 1.08998 * 109.47252 * 120.00611 * 2 1 3 36 36 H 1.08003 * 128.04165 * 359.97438 * 4 3 2 37 37 H 0.97000 * 119.99932 * 0.02562 * 8 6 5 38 38 H 1.09001 * 109.03122 * 305.97193 * 11 9 8 39 39 H 1.08998 * 109.03209 * 64.90116 * 11 9 8 40 40 H 1.09003 * 109.94462 * 176.91205 * 12 11 9 41 41 H 1.09006 * 109.94551 * 298.15721 * 12 11 9 42 42 H 1.08995 * 110.62815 * 274.37644 * 15 13 12 43 43 H 1.08996 * 110.63167 * 37.40474 * 15 13 12 44 44 H 0.97001 * 119.99937 * 179.97438 * 20 19 17 45 45 H 1.09001 * 110.16892 * 115.91835 * 25 16 15 46 46 H 1.08999 * 110.17036 * 237.64068 * 25 16 15 47 47 H 1.08991 * 109.94191 * 61.85989 * 28 26 25 48 48 H 1.09003 * 109.94191 * 300.61806 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3018 2.1826 1.0854 5 6 2.7386 3.4198 0.5354 6 6 3.1647 4.6273 1.2841 7 8 3.1628 4.6208 2.4990 8 7 3.5550 5.7312 0.6168 9 6 3.9754 6.9240 1.3564 10 1 4.4759 6.6151 2.2741 11 6 2.7426 7.7474 1.7148 12 6 3.1232 9.0824 2.3772 13 6 4.0243 9.8190 1.4054 14 1 3.5275 9.9432 0.4433 15 6 4.6088 11.1501 1.8843 16 7 5.8343 11.3069 1.0572 17 6 6.4482 12.4923 0.7523 18 1 7.3381 12.4978 0.1405 19 6 5.9267 13.6869 1.2296 20 7 4.8418 13.6803 1.9749 21 14 6.7646 15.3039 0.8142 22 1 6.7870 15.4855 -0.6595 23 1 6.0164 16.4241 1.4392 24 1 8.1562 15.2877 1.3321 25 6 6.2784 9.9625 0.6180 26 6 5.3241 8.9734 1.2748 27 1 5.6927 8.7040 2.2646 28 6 4.9638 7.7272 0.4933 29 7 2.6885 3.2774 -0.7657 30 8 2.2999 2.1751 -1.0750 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 2.2065 1.9141 2.1272 37 1 3.5569 5.7362 -0.3532 38 1 2.1744 7.9503 0.8069 39 1 2.1205 7.1750 2.4028 40 1 2.2261 9.6703 2.5711 41 1 3.6557 8.8961 3.3099 42 1 3.9112 11.9659 1.6953 43 1 4.8639 11.0989 2.9427 44 1 4.4776 14.5151 2.3087 45 1 6.2152 9.8818 -0.4672 46 1 7.3001 9.7774 0.9494 47 1 5.8591 7.1348 0.3048 48 1 4.4938 8.0032 -0.4506 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980212076.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:47 Heat of formation + Delta-G solvation = 39.377175 kcal Electronic energy + Delta-G solvation = -28363.346633 eV Core-core repulsion = 24421.744995 eV Total energy + Delta-G solvation = -3941.601639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.44160 -40.23992 -38.83741 -35.79547 -35.38205 -34.29395 -33.47233 -31.83835 -30.79558 -30.44424 -28.79193 -26.42895 -25.43961 -24.72579 -24.28511 -22.81534 -22.03297 -20.77562 -20.40777 -19.73667 -19.27515 -18.20288 -17.89237 -17.11688 -16.70033 -16.07428 -15.20210 -15.06486 -14.97391 -14.87752 -14.37934 -14.26309 -13.98078 -13.88507 -13.78023 -13.30518 -13.18215 -12.47810 -12.40104 -12.26002 -12.06381 -12.02669 -11.88956 -11.65012 -11.53461 -11.32210 -10.93742 -10.83521 -10.80445 -10.65207 -10.49483 -10.47925 -10.05394 -9.88593 -9.86597 -9.86021 -9.58954 -9.30032 -9.03660 -8.61827 -6.79221 -5.60751 -3.01681 0.77871 1.30585 2.50600 2.75460 2.93729 3.43018 3.46974 3.48445 3.64194 4.04942 4.43073 4.51397 4.59037 4.62160 4.71117 4.77638 4.89357 4.93823 5.12070 5.19218 5.24995 5.34218 5.38342 5.39359 5.48687 5.52594 5.62274 5.63868 5.66443 5.68224 5.79610 6.04807 6.15009 6.15855 6.24844 6.28966 6.39339 6.42462 6.57985 6.65639 6.70825 6.88211 7.06629 7.20633 7.58318 7.65126 7.65378 7.89724 7.89966 8.37575 9.24441 9.85683 10.52715 11.43620 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.039366 B = 0.001948 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.104903 B =14370.641054 C =14646.202998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.042 4.042 3 C -0.032 4.032 4 C -0.182 4.182 5 C -0.023 4.023 6 C 0.597 3.403 7 O -0.521 6.521 8 N -0.708 5.708 9 C 0.148 3.852 10 H 0.089 0.911 11 C -0.125 4.125 12 C -0.098 4.098 13 C -0.116 4.116 14 H 0.069 0.931 15 C 0.163 3.837 16 N -0.608 5.608 17 C -0.220 4.220 18 H 0.076 0.924 19 C -0.013 4.013 20 N -0.923 5.923 21 Si 0.914 3.086 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.286 1.286 25 C 0.145 3.855 26 C -0.103 4.103 27 H 0.071 0.929 28 C -0.106 4.106 29 N -0.332 5.332 30 O 0.122 5.878 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.180 0.820 37 H 0.405 0.595 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.104 0.896 43 H 0.013 0.987 44 H 0.252 0.748 45 H 0.022 0.978 46 H 0.024 0.976 47 H 0.066 0.934 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.810 -28.237 -3.983 29.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.080 4.080 3 C -0.095 4.095 4 C -0.204 4.204 5 C -0.182 4.182 6 C 0.380 3.620 7 O -0.396 6.396 8 N -0.358 5.358 9 C 0.045 3.955 10 H 0.107 0.893 11 C -0.164 4.164 12 C -0.136 4.136 13 C -0.136 4.136 14 H 0.088 0.912 15 C 0.039 3.961 16 N -0.334 5.334 17 C -0.349 4.349 18 H 0.094 0.906 19 C -0.208 4.208 20 N -0.572 5.572 21 Si 0.744 3.256 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.213 1.213 25 C 0.019 3.981 26 C -0.123 4.123 27 H 0.090 0.910 28 C -0.144 4.144 29 N -0.033 5.033 30 O 0.047 5.953 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.198 0.802 37 H 0.240 0.760 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.122 0.878 43 H 0.031 0.969 44 H 0.062 0.938 45 H 0.040 0.960 46 H 0.042 0.958 47 H 0.084 0.916 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.506 -27.112 -4.041 28.701 hybrid contribution 0.391 0.501 0.090 0.642 sum -8.116 -26.610 -3.951 28.100 Atomic orbital electron populations 1.21819 0.93246 1.02952 1.03057 1.20169 0.96813 0.85978 1.05084 1.24550 1.02266 0.97240 0.85429 1.22442 1.04807 0.91583 1.01564 1.23582 1.06366 0.98099 0.90155 1.16886 0.77599 0.81062 0.86428 1.90812 1.53577 1.82761 1.12418 1.46078 1.66039 1.12874 1.10856 1.21240 0.95316 0.83209 0.95754 0.89285 1.21909 0.96907 0.96619 1.00933 1.21252 0.99958 0.94058 0.98371 1.22400 0.94248 0.97744 0.99215 0.91217 1.21650 0.89122 0.93073 0.92278 1.45119 1.29051 1.00025 1.59244 1.19043 1.06853 0.82888 1.26111 0.90629 1.24771 0.98191 0.97667 1.00189 1.69806 1.22812 1.25167 1.39386 0.86165 0.78467 0.83185 0.77754 1.21248 1.21604 1.21287 1.20945 0.94979 0.85948 0.96188 1.21696 0.97689 0.93538 0.99342 0.91028 1.21539 0.97882 0.96437 0.98579 1.74181 1.14094 0.99401 1.15608 1.84778 1.59904 1.17180 1.33488 0.91929 0.91043 0.91912 0.89022 0.88184 0.80215 0.75987 0.92066 0.91990 0.91496 0.91775 0.87806 0.96875 0.93766 0.96016 0.95776 0.91564 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.47 9.89 37.16 0.37 -0.11 16 2 C -0.04 -0.14 6.50 -27.88 -0.18 -0.32 16 3 C -0.03 -0.23 6.73 -35.35 -0.24 -0.46 16 4 C -0.18 -1.63 10.92 -39.08 -0.43 -2.06 16 5 C -0.02 -0.26 7.19 -82.53 -0.59 -0.86 16 6 C 0.60 8.04 7.80 -12.11 -0.09 7.94 16 7 O -0.52 -8.43 16.58 5.37 0.09 -8.35 16 8 N -0.71 -8.69 5.03 -54.40 -0.27 -8.97 16 9 C 0.15 2.00 2.45 -67.73 -0.17 1.83 16 10 H 0.09 1.32 7.52 -51.93 -0.39 0.93 16 11 C -0.13 -1.75 5.37 -26.56 -0.14 -1.89 16 12 C -0.10 -1.55 5.71 -27.01 -0.15 -1.70 16 13 C -0.12 -2.18 2.47 -89.89 -0.22 -2.40 16 14 H 0.07 1.34 8.06 -51.93 -0.42 0.92 16 15 C 0.16 3.97 5.53 -2.81 -0.02 3.95 16 16 N -0.61 -15.80 3.45 -170.41 -0.59 -16.39 16 17 C -0.22 -6.25 10.30 -15.06 -0.16 -6.40 16 18 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 19 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 20 N -0.92 -27.22 10.11 55.49 0.56 -26.66 16 21 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 25 C 0.14 3.05 6.98 -3.43 -0.02 3.03 16 26 C -0.10 -1.79 2.30 -90.36 -0.21 -2.00 16 27 H 0.07 1.27 7.93 -51.93 -0.41 0.85 16 28 C -0.11 -1.46 5.17 -27.08 -0.14 -1.60 16 29 N -0.33 -3.67 11.84 33.29 0.39 -3.28 16 30 O 0.12 1.12 11.18 17.23 0.19 1.31 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.10 0.19 8.14 -51.93 -0.42 -0.24 16 36 H 0.18 1.35 8.06 -52.48 -0.42 0.92 16 37 H 0.41 4.37 8.37 -40.82 -0.34 4.03 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.06 1.02 7.99 -51.93 -0.41 0.61 16 42 H 0.10 2.85 5.93 -51.93 -0.31 2.54 16 43 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.02 0.45 8.08 -51.93 -0.42 0.03 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.07 0.94 8.06 -51.93 -0.42 0.53 16 LS Contribution 385.56 15.07 5.81 5.81 Total: -1.00 -32.71 385.56 -9.07 -41.78 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.74 Total: 0.91 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -2.49 Total: -3.51 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 0.09 Total: -55.29 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: 0.28 Total: -7.03 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.71 -9.07 -41.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980212076.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.153 kcal (2) G-P(sol) polarization free energy of solvation -32.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds