Wall clock time and date at job start Tue Mar 31 2020 17:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47343 * 2 1 4 4 C 1.35312 * 126.66500 * 90.00161 * 3 2 1 5 5 C 1.42268 * 103.92324 * 180.02562 * 4 3 2 6 6 C 1.48333 * 126.94281 * 179.97438 * 5 4 3 7 7 O 1.21493 * 119.99696 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00255 * 179.97438 * 6 5 4 9 9 C 1.46507 * 119.99905 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.02597 * 33.95914 * 9 8 6 11 11 C 1.52521 * 109.04178 * 275.00056 * 9 8 6 12 12 C 1.53806 * 111.70143 * 185.39865 * 11 9 8 13 13 C 1.51619 * 107.02005 * 57.53288 * 12 11 9 14 14 H 1.08992 * 110.50246 * 56.32843 * 13 12 11 15 15 C 1.53064 * 116.67694 * 183.72892 * 13 12 11 16 16 N 1.48672 * 103.44152 * 155.89225 * 15 13 12 17 17 C 1.36938 * 125.78090 * 155.58613 * 16 15 13 18 18 H 1.07995 * 119.99555 * 180.02562 * 17 16 15 19 19 C 1.38805 * 120.00089 * 0.02797 * 17 16 15 20 20 N 1.31622 * 120.00381 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99832 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46965 * 59.99675 * 21 19 17 23 23 H 1.48499 * 109.47137 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47107 * 299.99837 * 21 19 17 25 25 C 1.48236 * 108.42975 * 335.62272 * 16 15 13 26 26 C 1.52333 * 105.87005 * 356.81534 * 25 16 15 27 27 H 1.08995 * 109.88594 * 272.32354 * 26 25 16 28 28 C 1.51443 * 117.44408 * 145.30468 * 26 25 16 29 29 N 1.30984 * 106.12332 * 359.97438 * 5 4 3 30 30 O 1.20905 * 111.44289 * 359.97438 * 29 5 4 31 31 H 1.09001 * 109.46695 * 59.99881 * 1 2 3 32 32 H 1.09003 * 109.47206 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47084 * 300.00067 * 1 2 3 34 34 H 1.09006 * 109.46899 * 240.00151 * 2 1 3 35 35 H 1.08998 * 109.47252 * 120.00611 * 2 1 3 36 36 H 1.08003 * 128.04165 * 359.97438 * 4 3 2 37 37 H 0.97000 * 119.99932 * 0.02562 * 8 6 5 38 38 H 1.09001 * 109.03122 * 305.97193 * 11 9 8 39 39 H 1.08998 * 109.03209 * 64.90116 * 11 9 8 40 40 H 1.09003 * 109.94462 * 176.91205 * 12 11 9 41 41 H 1.09006 * 109.94551 * 298.15721 * 12 11 9 42 42 H 1.08995 * 110.62815 * 274.37644 * 15 13 12 43 43 H 1.08996 * 110.63167 * 37.40474 * 15 13 12 44 44 H 0.97001 * 119.99937 * 179.97438 * 20 19 17 45 45 H 1.09001 * 110.16892 * 115.91835 * 25 16 15 46 46 H 1.08999 * 110.17036 * 237.64068 * 25 16 15 47 47 H 1.08991 * 109.94191 * 61.85989 * 28 26 25 48 48 H 1.09003 * 109.94191 * 300.61806 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3018 2.1826 1.0854 5 6 2.7386 3.4198 0.5354 6 6 3.1647 4.6273 1.2841 7 8 3.1628 4.6208 2.4990 8 7 3.5550 5.7312 0.6168 9 6 3.9754 6.9240 1.3564 10 1 4.4759 6.6151 2.2741 11 6 2.7426 7.7474 1.7148 12 6 3.1232 9.0824 2.3772 13 6 4.0243 9.8190 1.4054 14 1 3.5275 9.9432 0.4433 15 6 4.6088 11.1501 1.8843 16 7 5.8343 11.3069 1.0572 17 6 6.4482 12.4923 0.7523 18 1 7.3381 12.4978 0.1405 19 6 5.9267 13.6869 1.2296 20 7 4.8418 13.6803 1.9749 21 14 6.7646 15.3039 0.8142 22 1 6.7870 15.4855 -0.6595 23 1 6.0164 16.4241 1.4392 24 1 8.1562 15.2877 1.3321 25 6 6.2784 9.9625 0.6180 26 6 5.3241 8.9734 1.2748 27 1 5.6927 8.7040 2.2646 28 6 4.9638 7.7272 0.4933 29 7 2.6885 3.2774 -0.7657 30 8 2.2999 2.1751 -1.0750 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 2.2065 1.9141 2.1272 37 1 3.5569 5.7362 -0.3532 38 1 2.1744 7.9503 0.8069 39 1 2.1205 7.1750 2.4028 40 1 2.2261 9.6703 2.5711 41 1 3.6557 8.8961 3.3099 42 1 3.9112 11.9659 1.6953 43 1 4.8639 11.0989 2.9427 44 1 4.4776 14.5151 2.3087 45 1 6.2152 9.8818 -0.4672 46 1 7.3001 9.7774 0.9494 47 1 5.8591 7.1348 0.3048 48 1 4.4938 8.0032 -0.4506 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980212076.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:46 Heat of formation + Delta-G solvation = 19.434878 kcal Electronic energy + Delta-G solvation = -28364.211396 eV Core-core repulsion = 24421.744995 eV Total energy + Delta-G solvation = -3942.466401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.17781 -41.43234 -40.20159 -37.23333 -35.84837 -35.30499 -34.77878 -33.54012 -32.09850 -31.14212 -30.44860 -27.96030 -27.04599 -25.70171 -24.93141 -23.64591 -23.50456 -21.93513 -21.63436 -21.35130 -20.59869 -18.93532 -18.80122 -18.58314 -17.98388 -17.15653 -16.88596 -16.25011 -15.96306 -15.70020 -15.62553 -15.42512 -15.33262 -14.95471 -14.87132 -14.36205 -14.14485 -13.68355 -13.56562 -13.51797 -13.48291 -13.19366 -12.98267 -12.88213 -12.75022 -12.66334 -12.40301 -12.19109 -11.97368 -11.84779 -11.81511 -11.74264 -11.65511 -11.58808 -11.42311 -11.13437 -10.86230 -10.72352 -10.47544 -10.22499 -8.88233 -7.76244 -5.20212 -0.00846 0.63322 1.45550 1.49086 1.55423 1.71135 1.97609 2.01139 2.49638 2.81799 3.33137 3.43101 3.50893 3.62691 3.63889 3.88484 3.90426 4.05393 4.08189 4.17242 4.30262 4.36384 4.38779 4.40753 4.45792 4.50907 4.63207 4.67963 4.73022 4.75271 4.92464 4.96908 4.97227 5.00076 5.05662 5.08388 5.14865 5.15401 5.21775 5.30660 5.37317 5.41547 5.45520 5.53489 5.73275 5.83501 6.22701 6.29445 6.84905 6.99260 7.09475 7.76553 8.43535 9.25943 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.039366 B = 0.001948 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.104903 B =14370.641054 C =14646.202998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.041 4.041 3 C -0.012 4.012 4 C -0.196 4.196 5 C -0.045 4.045 6 C 0.597 3.403 7 O -0.554 6.554 8 N -0.699 5.699 9 C 0.155 3.845 10 H 0.078 0.922 11 C -0.115 4.115 12 C -0.091 4.091 13 C -0.103 4.103 14 H 0.069 0.931 15 C 0.166 3.834 16 N -0.632 5.632 17 C -0.239 4.239 18 H 0.080 0.920 19 C -0.070 4.070 20 N -0.950 5.950 21 Si 0.981 3.019 22 H -0.276 1.276 23 H -0.293 1.293 24 H -0.279 1.279 25 C 0.140 3.860 26 C -0.089 4.089 27 H 0.068 0.932 28 C -0.094 4.094 29 N -0.346 5.346 30 O 0.125 5.875 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.191 0.809 37 H 0.415 0.585 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.069 0.931 43 H -0.014 1.014 44 H 0.246 0.754 45 H 0.031 0.969 46 H 0.025 0.975 47 H 0.084 0.916 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.984 -30.856 -5.325 32.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.079 4.079 3 C -0.075 4.075 4 C -0.219 4.219 5 C -0.203 4.203 6 C 0.382 3.618 7 O -0.431 6.431 8 N -0.349 5.349 9 C 0.052 3.948 10 H 0.096 0.904 11 C -0.154 4.154 12 C -0.130 4.130 13 C -0.123 4.123 14 H 0.087 0.913 15 C 0.042 3.958 16 N -0.359 5.359 17 C -0.368 4.368 18 H 0.098 0.902 19 C -0.262 4.262 20 N -0.600 5.600 21 Si 0.809 3.191 22 H -0.202 1.202 23 H -0.219 1.219 24 H -0.206 1.206 25 C 0.015 3.985 26 C -0.108 4.108 27 H 0.087 0.913 28 C -0.132 4.132 29 N -0.046 5.046 30 O 0.048 5.952 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.128 0.872 35 H 0.138 0.862 36 H 0.208 0.792 37 H 0.251 0.749 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.004 0.996 44 H 0.056 0.944 45 H 0.049 0.951 46 H 0.043 0.957 47 H 0.103 0.897 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.666 -29.754 -5.421 31.461 hybrid contribution 0.442 1.244 0.490 1.409 sum -8.223 -28.509 -4.931 30.079 Atomic orbital electron populations 1.21829 0.92955 1.03955 1.02314 1.20437 0.96845 0.83583 1.06999 1.25195 1.00106 0.98104 0.84074 1.22665 1.05489 0.91022 1.02679 1.23478 1.07884 0.98271 0.90662 1.17114 0.76925 0.81608 0.86150 1.90790 1.55047 1.83425 1.13805 1.45924 1.65557 1.12220 1.11222 1.21028 0.94868 0.83510 0.95436 0.90375 1.21794 0.97207 0.95251 1.01110 1.21185 0.99332 0.94831 0.97660 1.22176 0.95424 0.95159 0.99507 0.91251 1.21406 0.88474 0.95068 0.90850 1.45468 1.29705 1.01315 1.59400 1.19444 1.07126 0.84231 1.25984 0.90215 1.25641 0.99055 1.01023 1.00524 1.70073 1.24084 1.25412 1.40392 0.85118 0.77456 0.78771 0.77779 1.20222 1.21949 1.20553 1.21125 0.95816 0.84681 0.96850 1.21572 0.95603 0.94121 0.99521 0.91340 1.21430 0.98827 0.94641 0.98295 1.74172 1.14717 1.00354 1.15342 1.84750 1.59377 1.16878 1.34187 0.92704 0.89193 0.92664 0.87199 0.86162 0.79175 0.74880 0.91088 0.91994 0.91282 0.92080 0.91305 0.99618 0.94422 0.95069 0.95666 0.89706 0.90020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 9.89 71.98 0.71 0.16 16 2 C -0.04 -0.14 6.50 29.85 0.19 0.05 16 3 C -0.01 -0.14 6.73 25.01 0.17 0.03 16 4 C -0.20 -3.22 10.92 22.60 0.25 -2.98 16 5 C -0.05 -0.99 7.19 42.96 0.31 -0.68 16 6 C 0.60 15.51 7.80 86.93 0.68 16.19 16 7 O -0.55 -17.65 16.58 -3.69 -0.06 -17.71 16 8 N -0.70 -16.00 5.03 -444.33 -2.24 -18.24 16 9 C 0.16 3.93 2.45 45.12 0.11 4.04 16 10 H 0.08 2.22 7.52 -2.38 -0.02 2.20 16 11 C -0.12 -3.05 5.37 30.71 0.17 -2.88 16 12 C -0.09 -2.86 5.71 30.41 0.17 -2.69 16 13 C -0.10 -3.87 2.47 -10.32 -0.03 -3.89 16 14 H 0.07 2.62 8.06 -2.39 -0.02 2.60 16 15 C 0.17 8.41 5.53 85.98 0.48 8.89 16 16 N -0.63 -33.53 3.45 -693.07 -2.39 -35.92 16 17 C -0.24 -13.76 10.30 84.03 0.87 -12.89 16 18 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 19 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 20 N -0.95 -57.95 10.11 21.65 0.22 -57.73 16 21 Si 0.98 46.62 29.55 68.60 2.03 48.65 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 25 C 0.14 5.82 6.98 85.82 0.60 6.42 16 26 C -0.09 -3.00 2.30 -10.62 -0.02 -3.03 16 27 H 0.07 2.38 7.93 -2.39 -0.02 2.36 16 28 C -0.09 -2.37 5.17 30.37 0.16 -2.21 16 29 N -0.35 -7.15 11.84 -49.51 -0.59 -7.73 16 30 O 0.12 2.06 11.18 71.82 0.80 2.86 16 31 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.05 0.29 8.14 -2.39 -0.02 0.28 16 34 H 0.11 0.05 8.14 -2.38 -0.02 0.03 16 35 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 36 H 0.19 2.59 8.06 -2.91 -0.02 2.56 16 37 H 0.41 8.08 8.37 -92.71 -0.78 7.30 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.06 1.95 7.99 -2.38 -0.02 1.93 16 42 H 0.07 3.97 5.93 -2.39 -0.01 3.96 16 43 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 44 H 0.25 14.61 8.31 -92.71 -0.77 13.83 16 45 H 0.03 1.25 8.08 -2.39 -0.02 1.23 16 46 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.08 1.94 8.06 -2.39 -0.02 1.92 16 Total: -1.00 -72.96 385.56 3.23 -69.73 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.19 Total: 15.16 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 5.27 Total: 0.92 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -4.99 Total: -119.62 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: 0.74 Total: -14.85 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -72.96 3.23 -69.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980212076.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.167 kcal (2) G-P(sol) polarization free energy of solvation -72.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds