Wall clock time and date at job start Tue Mar 31 2020 17:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47214 * 2 1 4 4 N 1.30016 * 127.33865 * 270.14547 * 3 2 1 5 5 O 1.20651 * 112.30292 * 180.30106 * 4 3 2 6 6 C 1.33500 * 113.15668 * 359.71670 * 5 4 3 7 7 C 1.50701 * 126.83006 * 179.97438 * 6 5 4 8 8 C 1.37360 * 106.34234 * 0.02562 * 6 5 4 9 9 C 1.47397 * 128.56539 * 179.97438 * 8 6 5 10 10 O 1.21612 * 119.99608 * 90.03041 * 9 8 6 11 11 N 1.34773 * 119.99885 * 270.02417 * 9 8 6 12 12 C 1.47680 * 134.45049 * 180.02562 * 11 9 8 13 13 C 1.53438 * 85.96991 * 155.71093 * 12 11 9 14 14 C 1.47672 * 134.45707 * 0.02562 * 11 9 8 15 15 C 1.52632 * 113.71715 * 268.84963 * 13 12 11 16 16 C 1.53186 * 109.35419 * 171.27854 * 15 13 12 17 17 C 1.52667 * 109.42930 * 58.93080 * 16 15 13 18 18 N 1.46904 * 109.34156 * 303.76656 * 17 16 15 19 19 C 1.36944 * 120.68850 * 235.30814 * 18 17 16 20 20 H 1.07998 * 119.99529 * 28.62282 * 19 18 17 21 21 C 1.38810 * 120.00033 * 208.61675 * 19 18 17 22 22 N 1.31618 * 119.99650 * 14.60379 * 21 19 18 23 23 Si 1.86799 * 119.99965 * 194.60251 * 21 19 18 24 24 H 1.48496 * 109.47147 * 84.98925 * 23 21 19 25 25 H 1.48503 * 109.46835 * 204.98944 * 23 21 19 26 26 H 1.48500 * 109.46984 * 324.98944 * 23 21 19 27 27 C 1.47111 * 118.61926 * 55.04632 * 18 17 16 28 28 H 1.08994 * 109.47655 * 59.99887 * 1 2 3 29 29 H 1.09004 * 109.47193 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47081 * 299.99550 * 1 2 3 31 31 H 1.09005 * 109.47081 * 240.00450 * 2 1 3 32 32 H 1.09005 * 109.47527 * 120.00603 * 2 1 3 33 33 H 1.09001 * 109.47176 * 270.03192 * 7 6 5 34 34 H 1.09002 * 109.46922 * 30.02651 * 7 6 5 35 35 H 1.08990 * 109.47238 * 150.02637 * 7 6 5 36 36 H 1.08997 * 113.78903 * 41.44722 * 12 11 9 37 37 H 1.08995 * 113.79129 * 269.97683 * 12 11 9 38 38 H 1.08994 * 113.79456 * 90.02458 * 14 11 9 39 39 H 1.09000 * 113.79132 * 318.54455 * 14 11 9 40 40 H 1.08998 * 109.49222 * 291.24039 * 15 13 12 41 41 H 1.08996 * 109.49206 * 51.31299 * 15 13 12 42 42 H 1.08998 * 109.48673 * 179.02651 * 16 15 13 43 43 H 1.09000 * 109.49084 * 299.09608 * 16 15 13 44 44 H 1.08995 * 109.44201 * 183.78776 * 17 16 15 45 45 H 1.08993 * 109.37034 * 63.70886 * 17 16 15 46 46 H 0.97000 * 119.99332 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.64140 * 68.57470 * 27 18 17 48 48 H 1.08999 * 109.63533 * 188.98356 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2927 2.1652 -1.0337 5 8 2.6874 3.2615 -0.7207 6 6 2.7524 3.4385 0.6009 7 6 3.2010 4.6819 1.3248 8 6 2.3303 2.2617 1.1697 9 6 2.2107 1.9231 2.5993 10 8 1.1701 2.1391 3.1903 11 7 3.2546 1.3739 3.2513 12 6 3.4853 0.9204 4.6377 13 6 4.5620 0.0028 4.0435 14 6 4.6259 0.9846 2.8657 15 6 4.0458 -1.3815 3.6604 16 6 5.1331 -2.1323 2.8855 17 6 6.3842 -2.2514 3.7524 18 7 6.8139 -0.9111 4.1731 19 6 8.0862 -0.4731 3.9186 20 1 8.6252 -0.8487 3.0614 21 6 8.6830 0.4536 4.7623 22 7 8.1621 0.6968 5.9463 23 14 10.2255 1.3554 4.2174 24 1 9.8455 2.5445 3.4131 25 1 10.9926 1.7905 5.4122 26 1 11.0644 0.4482 3.3938 27 6 5.8473 -0.0471 4.8683 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 4.2761 4.6336 1.4979 34 1 2.9695 5.5582 0.7193 35 1 2.6819 4.7531 2.2805 36 1 2.6411 0.3844 5.0712 37 1 3.8813 1.6956 5.2937 38 1 5.3612 1.7787 2.9946 39 1 4.6878 0.4993 1.8916 40 1 3.7926 -1.9378 4.5629 41 1 3.1589 -1.2788 3.0352 42 1 4.7730 -3.1278 2.6258 43 1 5.3754 -1.5839 1.9752 44 1 7.1798 -2.7256 3.1779 45 1 6.1586 -2.8546 4.6317 46 1 8.5789 1.3446 6.5357 47 1 5.6334 -0.4568 5.8554 48 1 6.2601 0.9566 4.9699 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982146490.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:44 Heat of formation + Delta-G solvation = 71.526180 kcal Electronic energy + Delta-G solvation = -30345.361994 eV Core-core repulsion = 26405.154441 eV Total energy + Delta-G solvation = -3940.207553 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.91276 -40.48939 -38.23445 -35.82872 -35.38043 -33.70694 -32.92744 -31.48258 -30.42744 -30.05459 -28.17079 -26.31661 -26.01066 -25.43668 -24.70785 -23.38715 -22.34123 -20.81370 -20.11435 -19.26503 -17.90557 -17.83531 -17.43524 -16.84963 -16.39310 -15.80798 -15.55477 -14.78244 -14.58388 -14.41190 -14.06743 -13.95551 -13.66726 -13.50304 -13.45182 -13.20031 -13.01652 -12.93443 -12.72875 -12.57510 -12.39532 -11.90450 -11.76513 -11.74783 -11.64299 -11.32732 -11.04754 -10.96623 -10.84872 -10.55133 -10.43001 -10.26059 -10.07992 -9.99125 -9.87185 -9.65225 -9.49859 -9.40871 -8.57890 -8.50546 -6.74725 -5.88331 -3.31757 1.25220 1.85463 2.48601 2.71997 3.13502 3.30942 3.39182 3.39413 3.93754 4.16325 4.39917 4.52061 4.74062 4.81187 4.96325 5.07350 5.13863 5.16583 5.20048 5.21069 5.28504 5.33396 5.40780 5.49398 5.62065 5.66755 5.67329 5.68345 5.76352 5.80524 5.84389 5.88354 5.89852 6.00155 6.03327 6.06486 6.18189 6.32084 6.45274 6.54105 6.67198 6.77515 6.91754 7.15932 7.47720 7.71363 7.81507 8.15636 8.18539 8.35129 9.11967 9.74281 10.31918 11.20534 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012660 B = 0.004009 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.240610 B = 6982.450067 C = 7724.756294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 C 0.059 3.941 4 N -0.357 5.357 5 O 0.094 5.906 6 C 0.014 3.986 7 C -0.078 4.078 8 C -0.237 4.237 9 C 0.616 3.384 10 O -0.540 6.540 11 N -0.629 5.629 12 C 0.118 3.882 13 C -0.110 4.110 14 C 0.124 3.876 15 C -0.083 4.083 16 C -0.134 4.134 17 C 0.145 3.855 18 N -0.590 5.590 19 C -0.252 4.252 20 H 0.066 0.934 21 C 0.005 3.995 22 N -0.904 5.904 23 Si 0.901 3.099 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.191 3.809 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.047 0.953 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.018 0.982 46 H 0.255 0.745 47 H 0.027 0.973 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.083 1.913 -8.174 13.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 C -0.103 4.103 4 N -0.063 5.063 5 O 0.033 5.967 6 C -0.049 4.049 7 C -0.136 4.136 8 C -0.245 4.245 9 C 0.403 3.597 10 O -0.418 6.418 11 N -0.362 5.362 12 C -0.004 4.004 13 C -0.113 4.113 14 C 0.002 3.998 15 C -0.121 4.121 16 C -0.173 4.173 17 C 0.018 3.982 18 N -0.312 5.312 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.205 1.205 27 C 0.064 3.936 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.036 0.964 46 H 0.065 0.935 47 H 0.045 0.955 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.755 2.050 -9.146 15.034 hybrid contribution 0.830 0.519 0.482 1.091 sum -10.925 2.568 -8.664 14.178 Atomic orbital electron populations 1.21722 0.93547 1.02480 1.02669 1.19987 0.96754 0.87523 1.04157 1.24720 1.00492 0.98593 0.86527 1.73570 1.16632 0.92674 1.23378 1.84513 1.62691 1.26938 1.22581 1.24572 0.98791 0.97838 0.83700 1.20463 1.03079 0.90733 0.99297 1.21887 1.12036 0.95248 0.95289 1.16485 0.82934 0.76560 0.83724 1.90796 1.28600 1.54106 1.68290 1.50234 1.13005 1.59748 1.13249 1.23311 0.97333 0.96049 0.83711 1.22828 0.98179 0.93810 0.96486 1.23293 0.80551 0.96442 0.99522 1.21101 0.97064 0.94133 0.99753 1.21942 0.97294 0.98623 0.99428 1.20794 0.93836 0.88173 0.95366 1.43996 1.09262 1.10028 1.67925 1.19168 0.90707 1.22431 1.05841 0.91678 1.25049 0.97864 1.01713 0.94706 1.69984 1.41642 1.36147 1.07035 0.86337 0.83026 0.80027 0.77553 1.21395 1.21694 1.20488 1.20682 0.83903 0.97813 0.91155 0.92438 0.91421 0.91894 0.89544 0.89413 0.88519 0.89177 0.88836 0.90374 0.89190 0.89141 0.90806 0.91942 0.93421 0.92914 0.92489 0.92846 0.96379 0.93523 0.95542 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.89 37.16 0.37 -1.19 16 2 C -0.05 -0.54 6.54 -27.89 -0.18 -0.72 16 3 C 0.06 0.84 6.84 -79.76 -0.55 0.29 16 4 N -0.36 -5.21 12.01 34.78 0.42 -4.79 16 5 O 0.09 1.28 11.06 18.63 0.21 1.49 16 6 C 0.01 0.18 7.55 -34.63 -0.26 -0.08 16 7 C -0.08 -0.73 10.33 36.01 0.37 -0.36 16 8 C -0.24 -3.52 5.98 -102.89 -0.62 -4.14 16 9 C 0.62 10.08 7.83 -12.53 -0.10 9.98 16 10 O -0.54 -10.37 17.84 5.27 0.09 -10.28 16 11 N -0.63 -9.74 3.45 -181.77 -0.63 -10.37 16 12 C 0.12 1.79 7.97 -3.18 -0.03 1.77 16 13 C -0.11 -1.81 0.87 -154.43 -0.13 -1.94 16 14 C 0.12 1.96 7.57 -3.17 -0.02 1.94 16 15 C -0.08 -1.25 5.02 -26.82 -0.13 -1.39 16 16 C -0.13 -2.08 5.99 -26.81 -0.16 -2.25 16 17 C 0.14 2.76 6.43 -3.99 -0.03 2.73 16 18 N -0.59 -13.27 3.01 -172.75 -0.52 -13.79 16 19 C -0.25 -6.35 9.59 -15.06 -0.14 -6.49 16 20 H 0.07 1.64 7.87 -52.49 -0.41 1.22 16 21 C 0.01 0.14 4.97 -17.43 -0.09 0.05 16 22 N -0.90 -24.25 11.15 55.49 0.62 -23.63 16 23 Si 0.90 20.42 29.58 -169.99 -5.03 15.39 16 24 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 C 0.19 3.96 4.40 -3.81 -0.02 3.95 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.91 8.11 -51.93 -0.42 0.49 16 36 H 0.08 1.14 8.09 -51.93 -0.42 0.72 16 37 H 0.09 1.34 8.09 -51.93 -0.42 0.92 16 38 H 0.09 1.50 7.98 -51.93 -0.41 1.09 16 39 H 0.07 1.17 7.37 -51.93 -0.38 0.78 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.68 8.02 -51.93 -0.42 0.27 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.92 7.37 -51.93 -0.38 0.54 16 44 H 0.05 1.02 7.93 -51.93 -0.41 0.60 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 47 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.09 2.11 6.02 -51.93 -0.31 1.80 16 LS Contribution 391.92 15.07 5.91 5.91 Total: -1.00 -29.71 391.92 -8.43 -38.14 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -7.78 Total: -0.23 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -1.72 Total: 2.16 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.11 Total: -52.58 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.30 Total: -8.79 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.71 -8.43 -38.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982146490.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.666 kcal (2) G-P(sol) polarization free energy of solvation -29.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds