Wall clock time and date at job start Tue Mar 31 2020 17:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47214 * 2 1 4 4 N 1.30016 * 127.33865 * 270.14547 * 3 2 1 5 5 O 1.20651 * 112.30292 * 180.30106 * 4 3 2 6 6 C 1.33500 * 113.15668 * 359.71670 * 5 4 3 7 7 C 1.50701 * 126.83006 * 179.97438 * 6 5 4 8 8 C 1.37360 * 106.34234 * 0.02562 * 6 5 4 9 9 C 1.47397 * 128.56539 * 179.97438 * 8 6 5 10 10 O 1.21612 * 119.99608 * 90.03041 * 9 8 6 11 11 N 1.34773 * 119.99885 * 270.02417 * 9 8 6 12 12 C 1.47680 * 134.45049 * 180.02562 * 11 9 8 13 13 C 1.53438 * 85.96991 * 155.71093 * 12 11 9 14 14 C 1.47672 * 134.45707 * 0.02562 * 11 9 8 15 15 C 1.52632 * 113.71715 * 268.84963 * 13 12 11 16 16 C 1.53186 * 109.35419 * 171.27854 * 15 13 12 17 17 C 1.52667 * 109.42930 * 58.93080 * 16 15 13 18 18 N 1.46904 * 109.34156 * 303.76656 * 17 16 15 19 19 C 1.36944 * 120.68850 * 235.30814 * 18 17 16 20 20 H 1.07998 * 119.99529 * 28.62282 * 19 18 17 21 21 C 1.38810 * 120.00033 * 208.61675 * 19 18 17 22 22 N 1.31618 * 119.99650 * 14.60379 * 21 19 18 23 23 Si 1.86799 * 119.99965 * 194.60251 * 21 19 18 24 24 H 1.48496 * 109.47147 * 84.98925 * 23 21 19 25 25 H 1.48503 * 109.46835 * 204.98944 * 23 21 19 26 26 H 1.48500 * 109.46984 * 324.98944 * 23 21 19 27 27 C 1.47111 * 118.61926 * 55.04632 * 18 17 16 28 28 H 1.08994 * 109.47655 * 59.99887 * 1 2 3 29 29 H 1.09004 * 109.47193 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47081 * 299.99550 * 1 2 3 31 31 H 1.09005 * 109.47081 * 240.00450 * 2 1 3 32 32 H 1.09005 * 109.47527 * 120.00603 * 2 1 3 33 33 H 1.09001 * 109.47176 * 270.03192 * 7 6 5 34 34 H 1.09002 * 109.46922 * 30.02651 * 7 6 5 35 35 H 1.08990 * 109.47238 * 150.02637 * 7 6 5 36 36 H 1.08997 * 113.78903 * 41.44722 * 12 11 9 37 37 H 1.08995 * 113.79129 * 269.97683 * 12 11 9 38 38 H 1.08994 * 113.79456 * 90.02458 * 14 11 9 39 39 H 1.09000 * 113.79132 * 318.54455 * 14 11 9 40 40 H 1.08998 * 109.49222 * 291.24039 * 15 13 12 41 41 H 1.08996 * 109.49206 * 51.31299 * 15 13 12 42 42 H 1.08998 * 109.48673 * 179.02651 * 16 15 13 43 43 H 1.09000 * 109.49084 * 299.09608 * 16 15 13 44 44 H 1.08995 * 109.44201 * 183.78776 * 17 16 15 45 45 H 1.08993 * 109.37034 * 63.70886 * 17 16 15 46 46 H 0.97000 * 119.99332 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.64140 * 68.57470 * 27 18 17 48 48 H 1.08999 * 109.63533 * 188.98356 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2927 2.1652 -1.0337 5 8 2.6874 3.2615 -0.7207 6 6 2.7524 3.4385 0.6009 7 6 3.2010 4.6819 1.3248 8 6 2.3303 2.2617 1.1697 9 6 2.2107 1.9231 2.5993 10 8 1.1701 2.1391 3.1903 11 7 3.2546 1.3739 3.2513 12 6 3.4853 0.9204 4.6377 13 6 4.5620 0.0028 4.0435 14 6 4.6259 0.9846 2.8657 15 6 4.0458 -1.3815 3.6604 16 6 5.1331 -2.1323 2.8855 17 6 6.3842 -2.2514 3.7524 18 7 6.8139 -0.9111 4.1731 19 6 8.0862 -0.4731 3.9186 20 1 8.6252 -0.8487 3.0614 21 6 8.6830 0.4536 4.7623 22 7 8.1621 0.6968 5.9463 23 14 10.2255 1.3554 4.2174 24 1 9.8455 2.5445 3.4131 25 1 10.9926 1.7905 5.4122 26 1 11.0644 0.4482 3.3938 27 6 5.8473 -0.0471 4.8683 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 4.2761 4.6336 1.4979 34 1 2.9695 5.5582 0.7193 35 1 2.6819 4.7531 2.2805 36 1 2.6411 0.3844 5.0712 37 1 3.8813 1.6956 5.2937 38 1 5.3612 1.7787 2.9946 39 1 4.6878 0.4993 1.8916 40 1 3.7926 -1.9378 4.5629 41 1 3.1589 -1.2788 3.0352 42 1 4.7730 -3.1278 2.6258 43 1 5.3754 -1.5839 1.9752 44 1 7.1798 -2.7256 3.1779 45 1 6.1586 -2.8546 4.6317 46 1 8.5789 1.3446 6.5357 47 1 5.6334 -0.4568 5.8554 48 1 6.2601 0.9566 4.9699 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982146490.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:43 Heat of formation + Delta-G solvation = 56.062685 kcal Electronic energy + Delta-G solvation = -30346.032541 eV Core-core repulsion = 26405.154441 eV Total energy + Delta-G solvation = -3940.878101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.96991 -41.82889 -39.60717 -37.37916 -36.37714 -34.74188 -34.57189 -32.47395 -31.94386 -31.60808 -29.14727 -27.62927 -27.33852 -27.16429 -25.71789 -24.47616 -23.94642 -22.23633 -21.21117 -20.47109 -19.31216 -18.92917 -18.61181 -18.59897 -17.60491 -17.04465 -16.91398 -16.43222 -15.72530 -15.66270 -15.41673 -15.28070 -14.98888 -14.82612 -14.46643 -14.30695 -14.19700 -14.07402 -13.97001 -13.74655 -13.55204 -13.39047 -13.18646 -12.83618 -12.73098 -12.64745 -12.57551 -12.54340 -12.22818 -12.00247 -11.91181 -11.79984 -11.60089 -11.32195 -11.15903 -11.02138 -10.97591 -10.49881 -10.46126 -9.82331 -8.58962 -7.82287 -5.27208 0.21809 0.78252 1.22527 1.50044 1.52846 1.59224 1.59475 2.01164 2.54949 2.91169 3.17619 3.25441 3.36081 3.48983 3.80879 3.82801 3.90056 4.05385 4.05953 4.20817 4.25068 4.27193 4.33572 4.39489 4.43722 4.50360 4.54789 4.59056 4.60508 4.66652 4.72406 4.77378 4.84725 4.87694 4.97965 5.00145 5.03287 5.06789 5.16904 5.19090 5.29609 5.30347 5.44497 5.58932 5.70237 5.77879 6.44928 6.52267 6.90051 7.11476 7.21576 7.91630 8.43985 9.23938 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012660 B = 0.004009 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.240610 B = 6982.450067 C = 7724.756294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.048 4.048 3 C 0.058 3.942 4 N -0.373 5.373 5 O 0.092 5.908 6 C 0.029 3.971 7 C -0.080 4.080 8 C -0.270 4.270 9 C 0.624 3.376 10 O -0.571 6.571 11 N -0.622 5.622 12 C 0.120 3.880 13 C -0.102 4.102 14 C 0.133 3.867 15 C -0.078 4.078 16 C -0.121 4.121 17 C 0.140 3.860 18 N -0.606 5.606 19 C -0.255 4.255 20 H 0.064 0.936 21 C -0.041 4.041 22 N -0.932 5.932 23 Si 0.956 3.044 24 H -0.283 1.283 25 H -0.299 1.299 26 H -0.274 1.274 27 C 0.204 3.796 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.015 0.985 46 H 0.249 0.751 47 H 0.002 0.998 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.728 1.636 -9.720 15.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.086 4.086 3 C -0.105 4.105 4 N -0.080 5.080 5 O 0.033 5.967 6 C -0.035 4.035 7 C -0.136 4.136 8 C -0.277 4.277 9 C 0.412 3.588 10 O -0.452 6.452 11 N -0.355 5.355 12 C -0.002 4.002 13 C -0.105 4.105 14 C 0.011 3.989 15 C -0.116 4.116 16 C -0.160 4.160 17 C 0.014 3.986 18 N -0.329 5.329 19 C -0.386 4.386 20 H 0.081 0.919 21 C -0.236 4.236 22 N -0.578 5.578 23 Si 0.785 3.215 24 H -0.209 1.209 25 H -0.226 1.226 26 H -0.200 1.200 27 C 0.077 3.923 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.137 0.863 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.033 0.967 46 H 0.058 0.942 47 H 0.020 0.980 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.400 1.761 -10.718 16.484 hybrid contribution 1.052 0.574 0.977 1.546 sum -11.348 2.334 -9.741 15.136 Atomic orbital electron populations 1.21679 0.92769 1.03691 1.01648 1.20127 0.97359 0.86309 1.04823 1.25112 0.99815 0.99472 0.86075 1.73556 1.17602 0.93096 1.23752 1.84498 1.62647 1.26737 1.22832 1.25154 0.96750 0.98213 0.83390 1.20665 1.03563 0.90275 0.99141 1.21851 1.14578 0.96612 0.94650 1.16571 0.82278 0.75755 0.84168 1.90776 1.29723 1.55460 1.69195 1.50143 1.12716 1.59403 1.13194 1.23313 0.97255 0.95897 0.83783 1.22620 0.96357 0.95303 0.96202 1.23146 0.80446 0.95914 0.99406 1.21091 0.97361 0.92892 1.00237 1.21804 0.95488 1.00397 0.98307 1.20943 0.95470 0.86418 0.95737 1.44243 1.08938 1.11708 1.68053 1.19417 0.91776 1.22001 1.05389 0.91875 1.25640 1.00378 1.02788 0.94834 1.70124 1.42860 1.36824 1.07963 0.85458 0.80222 0.79055 0.76753 1.20941 1.22560 1.19953 1.20380 0.85374 0.95700 0.90806 0.92445 0.89111 0.93839 0.88072 0.89425 0.87332 0.86333 0.89237 0.89246 0.89151 0.90110 0.90243 0.91456 0.91743 0.89902 0.92740 0.93126 0.96740 0.94154 0.97968 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.89 71.98 0.71 -2.02 16 2 C -0.05 -1.04 6.54 29.85 0.20 -0.84 16 3 C 0.06 1.56 6.84 45.16 0.31 1.87 16 4 N -0.37 -10.38 12.01 -44.78 -0.54 -10.91 16 5 O 0.09 2.38 11.06 76.93 0.85 3.23 16 6 C 0.03 0.69 7.55 25.48 0.19 0.89 16 7 C -0.08 -1.32 10.33 71.24 0.74 -0.59 16 8 C -0.27 -7.69 5.98 -18.74 -0.11 -7.80 16 9 C 0.62 19.81 7.83 86.66 0.68 20.49 16 10 O -0.57 -21.61 17.84 -4.07 -0.07 -21.68 16 11 N -0.62 -18.58 3.45 -847.26 -2.92 -21.51 16 12 C 0.12 3.54 7.97 86.29 0.69 4.22 16 13 C -0.10 -3.26 0.87 -52.04 -0.05 -3.31 16 14 C 0.13 4.07 7.57 86.30 0.65 4.72 16 15 C -0.08 -2.19 5.02 30.53 0.15 -2.03 16 16 C -0.12 -3.47 5.99 30.55 0.18 -3.29 16 17 C 0.14 5.18 6.43 86.19 0.55 5.74 16 18 N -0.61 -27.31 3.01 -700.45 -2.11 -29.41 16 19 C -0.26 -12.91 9.59 84.03 0.81 -12.11 16 20 H 0.06 3.16 7.87 -2.91 -0.02 3.14 16 21 C -0.04 -2.10 4.97 84.86 0.42 -1.68 16 22 N -0.93 -51.12 11.15 21.65 0.24 -50.88 16 23 Si 0.96 42.19 29.58 68.60 2.03 44.22 16 24 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 C 0.20 8.56 4.40 86.20 0.38 8.94 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 1.61 8.11 -2.39 -0.02 1.59 16 36 H 0.09 2.47 8.09 -2.39 -0.02 2.45 16 37 H 0.09 2.68 8.09 -2.39 -0.02 2.66 16 38 H 0.08 2.66 7.98 -2.39 -0.02 2.64 16 39 H 0.08 2.37 7.37 -2.39 -0.02 2.35 16 40 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.06 1.64 8.02 -2.39 -0.02 1.62 16 42 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.05 1.61 7.37 -2.39 -0.02 1.60 16 44 H 0.05 1.87 7.93 -2.39 -0.02 1.86 16 45 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.25 13.42 8.31 -92.71 -0.77 12.65 16 47 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 48 H 0.06 2.96 6.02 -2.39 -0.01 2.95 16 Total: -1.00 -64.14 391.92 4.93 -59.21 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.95 Total: 14.53 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 6.50 Total: 13.20 kcal Atomic # 7 Polarization: -107.39 SS G_CDS: -5.33 Total: -112.71 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: 0.78 Total: -18.45 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -64.14 4.93 -59.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982146490.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.273 kcal (2) G-P(sol) polarization free energy of solvation -64.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds