Wall clock time and date at job start Tue Mar 31 2020 18:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47597 * 2 1 4 4 C 1.50700 * 109.47198 * 179.97438 * 3 2 1 5 5 C 1.38031 * 119.51068 * 125.00163 * 4 3 2 6 6 C 1.39922 * 119.13065 * 180.02562 * 5 4 3 7 7 C 1.48163 * 120.88972 * 180.02562 * 6 5 4 8 8 O 1.21510 * 120.00365 * 205.28950 * 7 6 5 9 9 N 1.34783 * 119.99655 * 25.29456 * 7 6 5 10 10 C 1.47421 * 125.65217 * 356.32936 * 9 7 6 11 11 C 1.54907 * 104.83256 * 155.83581 * 10 9 7 12 12 C 1.55161 * 101.58005 * 37.01180 * 11 10 9 13 13 H 1.08996 * 110.72155 * 83.03638 * 12 11 10 14 14 N 1.46505 * 110.71808 * 206.13168 * 12 11 10 15 15 C 1.36930 * 120.00368 * 273.54761 * 14 12 11 16 16 H 1.08003 * 119.99756 * 359.97438 * 15 14 12 17 17 C 1.38813 * 120.00304 * 180.02562 * 15 14 12 18 18 N 1.31612 * 119.99839 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99993 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46930 * 179.97438 * 19 17 15 21 21 H 1.48498 * 109.46924 * 299.99395 * 19 17 15 22 22 H 1.48493 * 109.47035 * 59.99550 * 19 17 15 23 23 C 1.47023 * 125.64230 * 176.28720 * 9 7 6 24 24 H 1.09003 * 109.88616 * 61.68064 * 23 9 7 25 25 C 1.52996 * 109.88672 * 300.51026 * 23 9 7 26 26 C 1.39613 * 118.22079 * 0.26889 * 6 5 4 27 27 C 1.38855 * 118.94242 * 359.44346 * 26 6 5 28 28 O 1.35689 * 119.61792 * 180.31184 * 27 26 6 29 29 N 1.31872 * 119.51544 * 304.98281 * 4 3 2 30 30 H 1.09010 * 109.46730 * 59.99784 * 1 2 3 31 31 H 1.08992 * 109.47293 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47280 * 300.00338 * 1 2 3 33 33 H 1.09000 * 109.47280 * 239.99662 * 2 1 3 34 34 H 1.09005 * 109.47023 * 120.00604 * 2 1 3 35 35 H 1.09000 * 109.46989 * 60.00087 * 3 2 1 36 36 H 1.08997 * 109.47479 * 300.00075 * 3 2 1 37 37 H 1.08004 * 120.42933 * 0.02562 * 5 4 3 38 38 H 1.08997 * 110.36161 * 37.00126 * 10 9 7 39 39 H 1.08993 * 110.36519 * 274.67590 * 10 9 7 40 40 H 1.09001 * 111.00703 * 278.94093 * 11 10 9 41 41 H 1.09005 * 111.00615 * 155.08382 * 11 10 9 42 42 H 0.97001 * 119.99928 * 93.54680 * 14 12 11 43 43 H 0.97000 * 120.00536 * 180.02562 * 18 17 15 44 44 H 1.08992 * 109.47085 * 302.19346 * 25 23 9 45 45 H 1.08999 * 109.47053 * 62.19676 * 25 23 9 46 46 H 1.09004 * 109.47424 * 182.19491 * 25 23 9 47 47 H 1.07994 * 120.52879 * 179.72773 * 26 6 5 48 48 H 0.96701 * 113.99760 * 270.25671 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4423 0.0006 5 6 4.2275 2.1311 -0.9832 6 6 5.6267 2.1253 -0.9753 7 6 6.3962 2.8519 -2.0121 8 8 7.5247 2.4980 -2.2908 9 7 5.8445 3.9056 -2.6461 10 6 4.4652 4.3928 -2.4627 11 6 4.5134 5.8848 -2.8765 12 6 5.5108 5.8465 -4.0645 13 1 5.0026 5.5621 -4.9857 14 7 6.1794 7.1406 -4.2218 15 6 5.5950 8.1266 -4.9710 16 1 4.6414 7.9501 -5.4463 17 6 6.2288 9.3525 -5.1206 18 7 7.3911 9.5673 -4.5418 19 14 5.4318 10.6973 -6.1433 20 1 6.3033 11.8997 -6.1454 21 1 5.2477 10.2165 -7.5361 22 1 4.1108 11.0449 -5.5609 23 6 6.5188 4.7599 -3.6345 24 1 6.8137 4.1650 -4.4990 25 6 7.7504 5.4128 -3.0040 26 6 6.2782 1.4121 0.0327 27 6 5.5171 0.7512 0.9877 28 8 6.1362 0.0592 1.9772 29 7 4.1963 0.7844 0.9412 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5140 0.8900 35 1 1.6768 1.9562 0.8900 36 1 1.6768 1.9563 -0.8899 37 1 3.6868 2.6676 -1.7489 38 1 4.1652 4.2982 -1.4191 39 1 3.7797 3.8424 -3.1069 40 1 4.8964 6.5033 -2.0647 41 1 3.5325 6.2322 -3.2010 42 1 7.0361 7.2989 -3.7953 43 1 7.8339 10.4241 -4.6460 44 1 7.4485 5.9894 -2.1297 45 1 8.4575 4.6398 -2.7031 46 1 8.2228 6.0745 -3.7301 47 1 7.3569 1.3788 0.0718 48 1 6.3155 -0.8654 1.7578 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987137004.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:59 Heat of formation + Delta-G solvation = -17.125855 kcal Electronic energy + Delta-G solvation = -28856.560241 eV Core-core repulsion = 24912.508447 eV Total energy + Delta-G solvation = -3944.051794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.19292 -39.85982 -37.70690 -37.57255 -35.16988 -34.39110 -32.94519 -31.61034 -31.02408 -30.69232 -28.99322 -27.22510 -25.45372 -24.97150 -23.67532 -22.95858 -22.55779 -21.61698 -20.01328 -19.08937 -18.60781 -17.61646 -17.37219 -16.53446 -16.29406 -15.81117 -15.64393 -15.33299 -15.17285 -14.68700 -14.53331 -14.22756 -13.87911 -13.72686 -13.43205 -13.16068 -13.02760 -12.72423 -12.56537 -12.44002 -12.15531 -12.07600 -11.87619 -11.70643 -11.49500 -11.44223 -11.27829 -11.03716 -11.00636 -10.84332 -10.55888 -10.37054 -10.20437 -10.07172 -10.03181 -9.72168 -9.54361 -9.11767 -8.98752 -8.57689 -7.08640 -5.86444 -3.16858 0.48789 0.66669 2.61595 2.88468 3.22622 3.38286 3.43074 3.44311 3.49558 4.08111 4.19849 4.50300 4.59083 4.68059 4.71433 4.74656 4.89153 4.90780 5.00590 5.15971 5.22410 5.23778 5.35184 5.38593 5.44738 5.46495 5.47935 5.54510 5.58834 5.70573 5.72748 5.75196 5.90413 5.91762 6.01052 6.02416 6.12766 6.13157 6.21779 6.45556 6.47258 6.60089 6.73750 6.89767 7.15374 7.53305 7.58184 7.60815 8.08505 8.31763 9.43456 9.97519 10.32324 11.35850 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015750 B = 0.002695 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.370875 B =10385.822660 C =11734.903165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.070 4.070 4 C 0.151 3.849 5 C -0.163 4.163 6 C -0.057 4.057 7 C 0.569 3.431 8 O -0.530 6.530 9 N -0.597 5.597 10 C 0.085 3.915 11 C -0.155 4.155 12 C 0.174 3.826 13 H 0.065 0.935 14 N -0.717 5.717 15 C -0.247 4.247 16 H 0.071 0.929 17 C -0.009 4.009 18 N -0.931 5.931 19 Si 0.909 3.091 20 H -0.291 1.291 21 H -0.285 1.285 22 H -0.285 1.285 23 C 0.129 3.871 24 H 0.076 0.924 25 C -0.160 4.160 26 C -0.138 4.138 27 C 0.311 3.689 28 O -0.479 6.479 29 N -0.488 5.488 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.158 0.842 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.391 0.609 43 H 0.258 0.742 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.083 0.917 47 H 0.151 0.849 48 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.418 -19.786 9.364 24.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.108 4.108 4 C 0.014 3.986 5 C -0.183 4.183 6 C -0.068 4.068 7 C 0.357 3.643 8 O -0.407 6.407 9 N -0.330 5.330 10 C -0.037 4.037 11 C -0.196 4.196 12 C 0.062 3.938 13 H 0.083 0.917 14 N -0.360 5.360 15 C -0.378 4.378 16 H 0.089 0.911 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.740 3.260 20 H -0.217 1.217 21 H -0.212 1.212 22 H -0.212 1.212 23 C 0.026 3.974 24 H 0.094 0.906 25 C -0.218 4.218 26 C -0.160 4.160 27 C 0.132 3.868 28 O -0.285 6.285 29 N -0.208 5.208 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.175 0.825 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.229 0.771 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.101 0.899 47 H 0.169 0.831 48 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -10.256 -19.807 10.070 24.472 hybrid contribution 0.400 0.847 -1.069 1.421 sum -9.857 -18.960 9.000 23.187 Atomic orbital electron populations 1.21787 0.95477 1.01801 1.01968 1.21437 0.95695 0.95442 1.02831 1.20652 0.87606 0.98782 1.03785 1.20966 0.96646 0.91817 0.89203 1.22812 0.93774 1.00512 1.01238 1.20251 0.93713 0.97151 0.95680 1.17719 0.85753 0.79726 0.81110 1.90779 1.18441 1.66287 1.65195 1.48478 1.14243 1.28583 1.41672 1.22818 0.83030 0.96903 1.00994 1.23615 1.02129 0.92423 1.01452 1.21185 0.90879 0.86527 0.95189 0.91723 1.42674 1.24173 1.08690 1.60503 1.19177 1.02679 0.92224 1.23716 0.91075 1.24761 0.96984 0.98048 1.00773 1.69640 1.16061 1.24332 1.47773 0.86247 0.78257 0.81486 0.80031 1.21670 1.21178 1.21197 1.21909 0.94188 0.91326 0.90023 0.90610 1.22013 0.97233 1.00781 1.01767 1.22188 1.02504 0.98326 0.92972 1.18922 0.86638 0.94130 0.87115 1.84810 1.77034 1.27882 1.38818 1.66749 1.09910 1.19849 1.24272 0.92589 0.92650 0.92553 0.92150 0.90875 0.89521 0.89728 0.82472 0.90473 0.90992 0.90476 0.90285 0.77057 0.93256 0.92380 0.92211 0.89854 0.83132 0.74146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.12 -0.82 5.79 -26.73 -0.15 -0.97 16 3 C -0.07 -0.52 5.61 -27.89 -0.16 -0.67 16 4 C 0.15 1.53 6.17 -82.65 -0.51 1.02 16 5 C -0.16 -1.70 7.65 -39.03 -0.30 -2.00 16 6 C -0.06 -0.73 5.75 -104.68 -0.60 -1.33 16 7 C 0.57 8.77 7.45 -12.18 -0.09 8.68 16 8 O -0.53 -9.73 15.74 5.36 0.08 -9.64 16 9 N -0.60 -8.82 3.08 -164.01 -0.51 -9.33 16 10 C 0.09 1.03 5.03 -2.53 -0.01 1.02 16 11 C -0.15 -2.36 6.77 -24.58 -0.17 -2.53 16 12 C 0.17 3.17 3.46 -66.09 -0.23 2.94 16 13 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 14 N -0.72 -16.74 5.02 -51.65 -0.26 -17.00 16 15 C -0.25 -6.44 9.98 -15.06 -0.15 -6.59 16 16 H 0.07 1.78 7.83 -52.48 -0.41 1.36 16 17 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 18 N -0.93 -27.09 13.06 55.49 0.72 -26.37 16 19 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.13 2.18 3.46 -66.95 -0.23 1.95 16 24 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 25 C -0.16 -2.92 7.95 37.16 0.30 -2.62 16 26 C -0.14 -1.67 9.62 -38.84 -0.37 -2.05 16 27 C 0.31 3.56 7.74 -17.16 -0.13 3.43 16 28 O -0.48 -4.63 13.56 -18.77 -0.25 -4.88 16 29 N -0.49 -5.63 9.87 -9.59 -0.09 -5.72 16 30 H 0.05 0.29 8.14 -51.92 -0.42 -0.13 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.59 7.94 -51.93 -0.41 0.18 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.48 7.86 -51.93 -0.41 0.07 16 37 H 0.16 1.35 4.42 -52.48 -0.23 1.12 16 38 H 0.08 0.82 6.05 -51.93 -0.31 0.50 16 39 H 0.07 0.70 7.37 -51.93 -0.38 0.31 16 40 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.39 9.72 4.92 -40.82 -0.20 9.52 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 45 H 0.06 1.09 6.88 -51.93 -0.36 0.73 16 46 H 0.08 1.65 6.67 -51.93 -0.35 1.31 16 47 H 0.15 1.79 7.92 -52.49 -0.42 1.37 16 48 H 0.40 1.78 9.06 45.56 0.41 2.20 16 LS Contribution 385.63 15.07 5.81 5.81 Total: -1.00 -32.44 385.63 -8.48 -40.93 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -6.43 Total: 10.30 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -2.54 Total: -0.60 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.13 Total: -58.41 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.17 Total: -14.53 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.44 -8.48 -40.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987137004.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.804 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds