Wall clock time and date at job start Tue Mar 31 2020 18:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47597 * 2 1 4 4 C 1.50700 * 109.47198 * 179.97438 * 3 2 1 5 5 C 1.38031 * 119.51068 * 125.00163 * 4 3 2 6 6 C 1.39922 * 119.13065 * 180.02562 * 5 4 3 7 7 C 1.48163 * 120.88972 * 180.02562 * 6 5 4 8 8 O 1.21510 * 120.00365 * 205.28950 * 7 6 5 9 9 N 1.34783 * 119.99655 * 25.29456 * 7 6 5 10 10 C 1.47421 * 125.65217 * 356.32936 * 9 7 6 11 11 C 1.54907 * 104.83256 * 155.83581 * 10 9 7 12 12 C 1.55161 * 101.58005 * 37.01180 * 11 10 9 13 13 H 1.08996 * 110.72155 * 83.03638 * 12 11 10 14 14 N 1.46505 * 110.71808 * 206.13168 * 12 11 10 15 15 C 1.36930 * 120.00368 * 273.54761 * 14 12 11 16 16 H 1.08003 * 119.99756 * 359.97438 * 15 14 12 17 17 C 1.38813 * 120.00304 * 180.02562 * 15 14 12 18 18 N 1.31612 * 119.99839 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99993 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46930 * 179.97438 * 19 17 15 21 21 H 1.48498 * 109.46924 * 299.99395 * 19 17 15 22 22 H 1.48493 * 109.47035 * 59.99550 * 19 17 15 23 23 C 1.47023 * 125.64230 * 176.28720 * 9 7 6 24 24 H 1.09003 * 109.88616 * 61.68064 * 23 9 7 25 25 C 1.52996 * 109.88672 * 300.51026 * 23 9 7 26 26 C 1.39613 * 118.22079 * 0.26889 * 6 5 4 27 27 C 1.38855 * 118.94242 * 359.44346 * 26 6 5 28 28 O 1.35689 * 119.61792 * 180.31184 * 27 26 6 29 29 N 1.31872 * 119.51544 * 304.98281 * 4 3 2 30 30 H 1.09010 * 109.46730 * 59.99784 * 1 2 3 31 31 H 1.08992 * 109.47293 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47280 * 300.00338 * 1 2 3 33 33 H 1.09000 * 109.47280 * 239.99662 * 2 1 3 34 34 H 1.09005 * 109.47023 * 120.00604 * 2 1 3 35 35 H 1.09000 * 109.46989 * 60.00087 * 3 2 1 36 36 H 1.08997 * 109.47479 * 300.00075 * 3 2 1 37 37 H 1.08004 * 120.42933 * 0.02562 * 5 4 3 38 38 H 1.08997 * 110.36161 * 37.00126 * 10 9 7 39 39 H 1.08993 * 110.36519 * 274.67590 * 10 9 7 40 40 H 1.09001 * 111.00703 * 278.94093 * 11 10 9 41 41 H 1.09005 * 111.00615 * 155.08382 * 11 10 9 42 42 H 0.97001 * 119.99928 * 93.54680 * 14 12 11 43 43 H 0.97000 * 120.00536 * 180.02562 * 18 17 15 44 44 H 1.08992 * 109.47085 * 302.19346 * 25 23 9 45 45 H 1.08999 * 109.47053 * 62.19676 * 25 23 9 46 46 H 1.09004 * 109.47424 * 182.19491 * 25 23 9 47 47 H 1.07994 * 120.52879 * 179.72773 * 26 6 5 48 48 H 0.96701 * 113.99760 * 270.25671 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4423 0.0006 5 6 4.2275 2.1311 -0.9832 6 6 5.6267 2.1253 -0.9753 7 6 6.3962 2.8519 -2.0121 8 8 7.5247 2.4980 -2.2908 9 7 5.8445 3.9056 -2.6461 10 6 4.4652 4.3928 -2.4627 11 6 4.5134 5.8848 -2.8765 12 6 5.5108 5.8465 -4.0645 13 1 5.0026 5.5621 -4.9857 14 7 6.1794 7.1406 -4.2218 15 6 5.5950 8.1266 -4.9710 16 1 4.6414 7.9501 -5.4463 17 6 6.2288 9.3525 -5.1206 18 7 7.3911 9.5673 -4.5418 19 14 5.4318 10.6973 -6.1433 20 1 6.3033 11.8997 -6.1454 21 1 5.2477 10.2165 -7.5361 22 1 4.1108 11.0449 -5.5609 23 6 6.5188 4.7599 -3.6345 24 1 6.8137 4.1650 -4.4990 25 6 7.7504 5.4128 -3.0040 26 6 6.2782 1.4121 0.0327 27 6 5.5171 0.7512 0.9877 28 8 6.1362 0.0592 1.9772 29 7 4.1963 0.7844 0.9412 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5140 0.8900 35 1 1.6768 1.9562 0.8900 36 1 1.6768 1.9563 -0.8899 37 1 3.6868 2.6676 -1.7489 38 1 4.1652 4.2982 -1.4191 39 1 3.7797 3.8424 -3.1069 40 1 4.8964 6.5033 -2.0647 41 1 3.5325 6.2322 -3.2010 42 1 7.0361 7.2989 -3.7953 43 1 7.8339 10.4241 -4.6460 44 1 7.4485 5.9894 -2.1297 45 1 8.4575 4.6398 -2.7031 46 1 8.2228 6.0745 -3.7301 47 1 7.3569 1.3788 0.0718 48 1 6.3155 -0.8654 1.7578 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987137004.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:58 Heat of formation + Delta-G solvation = -40.769065 kcal Electronic energy + Delta-G solvation = -28857.585488 eV Core-core repulsion = 24912.508447 eV Total energy + Delta-G solvation = -3945.077040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.15868 -40.97626 -38.98077 -38.38582 -36.05956 -35.76894 -34.10914 -33.08397 -32.20895 -31.63449 -30.59180 -27.90220 -26.91848 -26.08934 -25.30095 -23.90285 -23.60371 -22.32143 -21.12184 -20.29182 -19.63018 -19.36966 -18.44420 -17.49246 -17.29481 -17.02141 -16.70375 -16.52335 -16.20693 -15.80633 -15.71799 -15.42381 -15.22401 -14.73219 -14.56722 -14.46660 -13.97781 -13.77213 -13.68474 -13.56016 -13.17826 -13.09431 -12.94611 -12.89976 -12.83830 -12.70792 -12.49731 -12.22324 -12.12450 -12.05270 -11.97751 -11.61541 -11.56895 -11.51856 -11.33938 -11.00412 -10.88139 -10.47655 -9.93082 -9.78364 -8.99972 -7.92062 -5.21110 -0.44045 -0.15102 1.50379 1.52450 1.53526 1.59294 1.74834 2.41569 2.58788 2.63933 3.12057 3.39429 3.41953 3.62458 3.76314 3.84382 3.87261 3.91623 4.10550 4.15009 4.23260 4.25005 4.30120 4.35250 4.37631 4.53631 4.56461 4.59771 4.69087 4.72743 4.80721 4.86816 4.91071 4.95574 5.01053 5.05724 5.19423 5.21131 5.23840 5.27652 5.40212 5.43774 5.48550 5.54711 5.56989 6.29106 6.35591 6.53000 6.79915 6.88501 7.36840 8.10384 8.33189 9.31483 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015750 B = 0.002695 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.370875 B =10385.822660 C =11734.903165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.070 4.070 4 C 0.154 3.846 5 C -0.154 4.154 6 C -0.069 4.069 7 C 0.568 3.432 8 O -0.569 6.569 9 N -0.596 5.596 10 C 0.090 3.910 11 C -0.146 4.146 12 C 0.167 3.833 13 H 0.074 0.926 14 N -0.733 5.733 15 C -0.237 4.237 16 H 0.084 0.916 17 C -0.076 4.076 18 N -0.972 5.972 19 Si 0.972 3.028 20 H -0.303 1.303 21 H -0.278 1.278 22 H -0.275 1.275 23 C 0.135 3.865 24 H 0.073 0.927 25 C -0.147 4.147 26 C -0.150 4.150 27 C 0.312 3.688 28 O -0.487 6.487 29 N -0.500 5.500 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.182 0.818 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.054 0.946 41 H 0.096 0.904 42 H 0.380 0.620 43 H 0.249 0.751 44 H 0.047 0.953 45 H 0.055 0.945 46 H 0.061 0.939 47 H 0.144 0.856 48 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.796 -20.975 9.388 26.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.108 4.108 4 C 0.016 3.984 5 C -0.174 4.174 6 C -0.080 4.080 7 C 0.357 3.643 8 O -0.449 6.449 9 N -0.328 5.328 10 C -0.031 4.031 11 C -0.186 4.186 12 C 0.057 3.943 13 H 0.092 0.908 14 N -0.376 5.376 15 C -0.369 4.369 16 H 0.102 0.898 17 C -0.268 4.268 18 N -0.623 5.623 19 Si 0.802 3.198 20 H -0.229 1.229 21 H -0.204 1.204 22 H -0.201 1.201 23 C 0.031 3.969 24 H 0.091 0.909 25 C -0.205 4.205 26 C -0.172 4.172 27 C 0.133 3.867 28 O -0.297 6.297 29 N -0.220 5.220 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.129 0.871 37 H 0.198 0.802 38 H 0.118 0.882 39 H 0.130 0.870 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.216 0.784 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.162 0.838 48 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -13.699 -21.062 10.104 27.080 hybrid contribution 1.432 1.074 -1.019 2.059 sum -12.267 -19.988 9.085 25.150 Atomic orbital electron populations 1.21765 0.94384 1.02110 1.02517 1.21391 0.96576 0.95152 1.01999 1.20803 0.85455 0.99201 1.05326 1.21472 0.97986 0.90611 0.88335 1.22992 0.92540 1.00229 1.01615 1.20066 0.94661 0.97930 0.95310 1.18130 0.85451 0.79556 0.81115 1.90756 1.20264 1.67473 1.66365 1.48462 1.15222 1.28111 1.40983 1.23057 0.82010 0.94748 1.03317 1.23420 1.01592 0.94602 0.99033 1.21411 0.91503 0.84542 0.96878 0.90781 1.42868 1.24178 1.10221 1.60311 1.19621 1.02556 0.92456 1.22219 0.89789 1.25548 0.97814 1.00585 1.02881 1.69811 1.17864 1.24375 1.50220 0.85229 0.77351 0.78431 0.78834 1.22935 1.20419 1.20137 1.21660 0.93461 0.91305 0.90485 0.90897 1.21839 0.97907 1.00049 1.00725 1.22188 1.02386 0.99017 0.93600 1.18939 0.86722 0.94076 0.86957 1.84755 1.76904 1.29573 1.38477 1.66864 1.09808 1.20359 1.24982 0.91664 0.92551 0.92348 0.92361 0.92403 0.88980 0.87133 0.80155 0.88201 0.87047 0.92742 0.88516 0.78415 0.94178 0.93377 0.92612 0.92025 0.83823 0.71670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 71.98 0.71 -0.57 16 2 C -0.11 -1.28 5.79 30.59 0.18 -1.10 16 3 C -0.07 -0.77 5.61 29.85 0.17 -0.60 16 4 C 0.15 2.64 6.17 42.50 0.26 2.90 16 5 C -0.15 -2.69 7.65 22.63 0.17 -2.52 16 6 C -0.07 -1.65 5.75 -19.90 -0.11 -1.76 16 7 C 0.57 16.99 7.45 86.88 0.65 17.64 16 8 O -0.57 -21.13 15.74 -3.75 -0.06 -21.19 16 9 N -0.60 -16.58 3.08 -791.09 -2.44 -19.02 16 10 C 0.09 1.82 5.03 86.86 0.44 2.26 16 11 C -0.15 -4.07 6.77 31.99 0.22 -3.85 16 12 C 0.17 5.84 3.46 46.18 0.16 6.00 16 13 H 0.07 2.48 8.12 -2.39 -0.02 2.46 16 14 N -0.73 -34.35 5.02 -317.32 -1.59 -35.95 16 15 C -0.24 -12.23 9.98 84.03 0.84 -11.39 16 16 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 17 C -0.08 -4.19 5.50 84.86 0.47 -3.73 16 18 N -0.97 -58.16 13.06 21.65 0.28 -57.87 16 19 Si 0.97 44.37 29.55 68.60 2.03 46.39 16 20 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 23 C 0.13 4.52 3.46 45.34 0.16 4.67 16 24 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 25 C -0.15 -5.57 7.95 71.98 0.57 -4.99 16 26 C -0.15 -3.54 9.62 22.75 0.22 -3.33 16 27 C 0.31 6.76 7.74 84.78 0.66 7.42 16 28 O -0.49 -8.90 13.56 -90.08 -1.22 -10.12 16 29 N -0.50 -10.54 9.87 -297.14 -2.93 -13.47 16 30 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.83 7.94 -2.38 -0.02 0.81 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.11 0.66 7.86 -2.39 -0.02 0.65 16 37 H 0.18 2.18 4.42 -2.91 -0.01 2.16 16 38 H 0.10 1.67 6.05 -2.39 -0.01 1.65 16 39 H 0.11 1.50 7.37 -2.39 -0.02 1.48 16 40 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 42 H 0.38 19.46 4.92 -92.71 -0.46 19.00 16 43 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 45 H 0.05 2.12 6.88 -2.39 -0.02 2.10 16 46 H 0.06 2.59 6.67 -2.39 -0.02 2.57 16 47 H 0.14 3.50 7.92 -2.91 -0.02 3.48 16 48 H 0.42 3.26 9.06 -74.06 -0.67 2.59 16 Total: -1.00 -71.91 385.63 -0.32 -72.22 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: -0.13 Total: 31.97 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 5.75 Total: 7.04 kcal Atomic # 7 Polarization: -119.63 SS G_CDS: -6.68 Total: -126.31 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -1.28 Total: -31.31 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -71.91 -0.32 -72.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987137004.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.454 kcal (2) G-P(sol) polarization free energy of solvation -71.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds