Wall clock time and date at job start Tue Mar 31 2020 18:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47278 * 2 1 4 4 C 1.50707 * 109.47105 * 179.97438 * 3 2 1 5 5 C 1.38023 * 119.51105 * 125.25739 * 4 3 2 6 6 C 1.39927 * 119.13151 * 180.25061 * 5 4 3 7 7 C 1.48159 * 120.89083 * 179.77511 * 6 5 4 8 8 O 1.21512 * 120.00251 * 349.39439 * 7 6 5 9 9 N 1.34775 * 119.99955 * 169.38830 * 7 6 5 10 10 C 1.47426 * 125.64768 * 353.42258 * 9 7 6 11 11 C 1.54914 * 104.82958 * 203.86053 * 10 9 7 12 12 C 1.55152 * 101.58648 * 322.98895 * 11 10 9 13 13 H 1.08997 * 110.72050 * 277.14492 * 12 11 10 14 14 N 1.46495 * 110.72308 * 154.04425 * 12 11 10 15 15 C 1.36932 * 120.00243 * 86.45274 * 14 12 11 16 16 H 1.08000 * 119.99478 * 0.02562 * 15 14 12 17 17 C 1.38810 * 120.00464 * 179.97438 * 15 14 12 18 18 N 1.31629 * 119.99628 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00414 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47238 * 59.99997 * 19 17 15 21 21 H 1.48506 * 109.47370 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47016 * 300.00212 * 19 17 15 23 23 C 1.47029 * 125.64708 * 173.11081 * 9 7 6 24 24 H 1.08993 * 109.88109 * 298.62253 * 23 9 7 25 25 C 1.52997 * 109.88203 * 59.79440 * 23 9 7 26 26 C 1.39605 * 118.21512 * 359.50471 * 6 5 4 27 27 C 1.38848 * 118.95398 * 0.25012 * 26 6 5 28 28 O 1.35678 * 119.62813 * 179.97438 * 27 26 6 29 29 N 1.31879 * 119.51286 * 305.00396 * 4 3 2 30 30 H 1.08999 * 109.47422 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46958 * 299.99687 * 1 2 3 32 32 H 1.09002 * 109.46994 * 59.99314 * 1 2 3 33 33 H 1.09005 * 109.46769 * 240.00056 * 2 1 3 34 34 H 1.09000 * 109.47502 * 120.00704 * 2 1 3 35 35 H 1.09005 * 109.47175 * 60.00305 * 3 2 1 36 36 H 1.08993 * 109.47699 * 300.00132 * 3 2 1 37 37 H 1.08001 * 120.43569 * 0.02562 * 5 4 3 38 38 H 1.08992 * 110.36757 * 322.69844 * 10 9 7 39 39 H 1.08993 * 110.36629 * 85.02312 * 10 9 7 40 40 H 1.09003 * 111.00412 * 81.06751 * 11 10 9 41 41 H 1.09005 * 111.00068 * 204.91445 * 11 10 9 42 42 H 0.97002 * 119.99857 * 266.45947 * 14 12 11 43 43 H 0.97003 * 119.99800 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.47442 * 58.54472 * 25 23 9 45 45 H 1.09001 * 109.47192 * 178.54603 * 25 23 9 46 46 H 1.09005 * 109.47160 * 298.54145 * 25 23 9 47 47 H 1.08004 * 120.52539 * 180.22574 * 26 6 5 48 48 H 0.96707 * 113.99814 * 90.00288 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.2274 2.1356 -0.9800 6 6 5.6266 2.1258 -0.9749 7 6 6.3961 2.8524 -2.0118 8 8 5.8271 3.3039 -2.9859 9 7 7.7272 3.0127 -1.8745 10 6 8.5196 2.6406 -0.6882 11 6 9.7788 3.5405 -0.7543 12 6 10.0507 3.5844 -2.2812 13 1 10.6067 2.7025 -2.5994 14 7 10.7703 4.8075 -2.6447 15 6 12.1375 4.8435 -2.5767 16 1 12.6853 3.9699 -2.2554 17 6 12.8194 6.0023 -2.9216 18 7 12.1518 7.0668 -3.3136 19 14 14.6844 6.0511 -2.8295 20 1 15.2519 5.0185 -3.7333 21 1 15.1657 7.3928 -3.2460 22 1 15.1184 5.7810 -1.4351 23 6 8.6306 3.5818 -2.8854 24 1 8.6121 2.9685 -3.7862 25 6 8.2040 5.0130 -3.2178 26 6 6.2781 1.4178 0.0367 27 6 5.5172 0.7516 0.9880 28 8 6.1362 0.0589 1.9769 29 7 4.1963 0.7842 0.9411 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5140 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 3.6869 2.6755 -1.7434 38 1 7.9564 2.8426 0.2228 39 1 8.8020 1.5890 -0.7354 40 1 9.5677 4.5370 -0.3663 41 1 10.6134 3.0843 -0.2218 42 1 10.2783 5.5920 -2.9335 43 1 12.6283 7.8767 -3.5542 44 1 8.2194 5.6168 -2.3104 45 1 8.8930 5.4371 -3.9482 46 1 7.1956 5.0047 -3.6316 47 1 7.3569 1.3884 0.0784 48 1 6.3157 0.5817 2.7704 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987137007.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:02 Heat of formation + Delta-G solvation = -10.580377 kcal Electronic energy + Delta-G solvation = -28707.421155 eV Core-core repulsion = 24763.653195 eV Total energy + Delta-G solvation = -3943.767961 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.21062 -39.85361 -37.86194 -37.38280 -35.26559 -34.38851 -32.97928 -31.54363 -30.97709 -30.73784 -28.97369 -27.33448 -25.40917 -24.99960 -23.55800 -23.13373 -22.49352 -21.56696 -20.17277 -19.11598 -18.56232 -17.58960 -17.28844 -16.52922 -16.23573 -15.90548 -15.75224 -15.30985 -15.05637 -14.71979 -14.50246 -14.14791 -13.95025 -13.75322 -13.45164 -13.11704 -13.01705 -12.73093 -12.59435 -12.39360 -12.16993 -12.03235 -11.78542 -11.75262 -11.51018 -11.43258 -11.28421 -11.03665 -10.99349 -10.84139 -10.55879 -10.38429 -10.17139 -10.07429 -10.01725 -9.70870 -9.50853 -9.11087 -8.99200 -8.57840 -7.08780 -5.86662 -3.17085 0.46444 0.67126 2.67982 2.86252 3.23982 3.38140 3.43099 3.44105 3.49888 4.10611 4.19175 4.50145 4.60873 4.66868 4.74163 4.76158 4.82310 4.93313 5.09564 5.10498 5.19223 5.24525 5.33357 5.37970 5.44627 5.45176 5.47807 5.54458 5.57737 5.70275 5.74148 5.76207 5.91078 5.93297 6.01491 6.03215 6.13712 6.14738 6.21351 6.46180 6.47574 6.61436 6.74435 6.90584 7.15437 7.53089 7.58844 7.60745 8.08865 8.31559 9.43248 9.97293 10.32226 11.35526 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026173 B = 0.002359 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.536485 B =11868.595282 C =12704.129763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.069 4.069 4 C 0.149 3.851 5 C -0.126 4.126 6 C -0.060 4.060 7 C 0.569 3.431 8 O -0.528 6.528 9 N -0.598 5.598 10 C 0.085 3.915 11 C -0.155 4.155 12 C 0.174 3.826 13 H 0.065 0.935 14 N -0.716 5.716 15 C -0.247 4.247 16 H 0.071 0.929 17 C -0.010 4.010 18 N -0.930 5.930 19 Si 0.910 3.090 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C 0.128 3.872 24 H 0.075 0.925 25 C -0.160 4.160 26 C -0.185 4.185 27 C 0.310 3.690 28 O -0.479 6.479 29 N -0.488 5.488 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.150 0.850 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.391 0.609 43 H 0.257 0.743 44 H 0.057 0.943 45 H 0.080 0.920 46 H 0.063 0.937 47 H 0.171 0.829 48 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.394 -12.493 9.726 24.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.107 4.107 4 C 0.011 3.989 5 C -0.146 4.146 6 C -0.071 4.071 7 C 0.357 3.643 8 O -0.405 6.405 9 N -0.331 5.331 10 C -0.038 4.038 11 C -0.196 4.196 12 C 0.062 3.938 13 H 0.083 0.917 14 N -0.360 5.360 15 C -0.378 4.378 16 H 0.089 0.911 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C 0.025 3.975 24 H 0.093 0.907 25 C -0.218 4.218 26 C -0.206 4.206 27 C 0.131 3.869 28 O -0.286 6.286 29 N -0.208 5.208 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.168 0.832 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.229 0.771 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.099 0.901 46 H 0.082 0.918 47 H 0.187 0.813 48 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -18.988 -13.151 9.427 24.947 hybrid contribution 1.552 1.020 -0.101 1.860 sum -17.436 -12.131 9.326 23.198 Atomic orbital electron populations 1.21781 0.95509 1.01808 1.01854 1.21447 0.95644 0.95448 1.02983 1.20636 0.87615 0.98759 1.03659 1.20952 0.96653 0.91829 0.89436 1.22128 0.93183 0.99811 0.99506 1.20291 0.94191 0.97491 0.95085 1.17722 0.80711 0.80059 0.85808 1.90765 1.68681 1.49374 1.31691 1.48465 1.05741 1.60567 1.18335 1.22855 0.93618 0.99258 0.88067 1.23628 0.94936 0.99493 1.01563 1.21180 0.89119 0.92348 0.91188 0.91748 1.42651 1.03892 1.10020 1.79411 1.19178 0.82594 0.97576 1.38412 0.91073 1.24770 0.98062 0.96074 1.01733 1.69653 1.34563 1.02714 1.50853 0.86240 0.85272 0.76717 0.77736 1.21181 1.21669 1.21211 1.21929 0.89760 0.95372 0.90394 0.90692 1.22029 1.02058 0.95141 1.02569 1.23379 1.04025 0.97395 0.95784 1.18996 0.86661 0.90743 0.90493 1.84805 1.76997 1.39321 1.27474 1.66744 1.10094 1.18095 1.25874 0.92616 0.92611 0.92655 0.92092 0.90808 0.89640 0.89760 0.83180 0.90412 0.90820 0.90438 0.90247 0.77057 0.93274 0.92440 0.90097 0.91798 0.81255 0.74101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.12 -0.90 5.79 -26.73 -0.15 -1.06 16 3 C -0.07 -0.54 5.61 -27.88 -0.16 -0.69 16 4 C 0.15 1.57 6.18 -82.65 -0.51 1.06 16 5 C -0.13 -1.44 9.27 -39.03 -0.36 -1.81 16 6 C -0.06 -0.76 5.87 -104.68 -0.61 -1.37 16 7 C 0.57 8.74 7.62 -12.19 -0.09 8.65 16 8 O -0.53 -9.56 15.19 5.36 0.08 -9.48 16 9 N -0.60 -8.87 3.08 -164.00 -0.50 -9.38 16 10 C 0.08 1.03 4.91 -2.53 -0.01 1.02 16 11 C -0.15 -2.36 6.77 -24.58 -0.17 -2.53 16 12 C 0.17 3.17 3.45 -66.10 -0.23 2.95 16 13 H 0.06 1.17 8.12 -51.93 -0.42 0.75 16 14 N -0.72 -16.73 5.02 -51.66 -0.26 -16.99 16 15 C -0.25 -6.44 9.98 -15.06 -0.15 -6.59 16 16 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 18 N -0.93 -27.05 13.06 55.49 0.72 -26.32 16 19 Si 0.91 21.55 29.55 -169.99 -5.02 16.52 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.13 2.19 3.52 -66.95 -0.24 1.95 16 24 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 25 C -0.16 -2.92 7.94 37.16 0.29 -2.62 16 26 C -0.18 -2.04 8.30 -38.85 -0.32 -2.36 16 27 C 0.31 3.41 7.74 -17.16 -0.13 3.28 16 28 O -0.48 -4.39 13.56 -18.74 -0.25 -4.65 16 29 N -0.49 -5.64 9.87 -9.59 -0.09 -5.73 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.65 7.94 -51.93 -0.41 0.24 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.54 7.86 -51.93 -0.41 0.13 16 37 H 0.15 1.62 7.66 -52.49 -0.40 1.22 16 38 H 0.08 0.80 6.15 -51.93 -0.32 0.49 16 39 H 0.07 0.76 7.26 -51.93 -0.38 0.39 16 40 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.39 9.72 4.96 -40.82 -0.20 9.52 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 45 H 0.08 1.60 6.73 -51.93 -0.35 1.25 16 46 H 0.06 1.17 6.57 -51.93 -0.34 0.83 16 47 H 0.17 1.64 3.59 -52.48 -0.19 1.45 16 48 H 0.40 1.67 9.06 45.56 0.41 2.09 16 LS Contribution 384.25 15.07 5.79 5.79 Total: -1.00 -32.22 384.25 -8.47 -40.69 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -6.36 Total: 10.60 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -2.57 Total: -1.04 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.13 Total: -58.43 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.17 Total: -14.13 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.22 -8.47 -40.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987137007.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.108 kcal (2) G-P(sol) polarization free energy of solvation -32.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds