Wall clock time and date at job start Tue Mar 31 2020 18:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46881 * 2 1 4 4 C 1.50709 * 109.47021 * 180.02562 * 3 2 1 5 5 C 1.38023 * 119.51152 * 125.27643 * 4 3 2 6 6 C 1.39929 * 119.12751 * 180.25160 * 5 4 3 7 7 C 1.48158 * 120.88918 * 179.75928 * 6 5 4 8 8 O 1.21511 * 120.00395 * 16.35251 * 7 6 5 9 9 N 1.34780 * 120.00022 * 196.36029 * 7 6 5 10 10 C 1.47423 * 125.64937 * 174.39224 * 9 7 6 11 11 C 1.54916 * 104.83198 * 155.90260 * 10 9 7 12 12 C 1.55151 * 101.57926 * 37.00670 * 11 10 9 13 13 H 1.09002 * 110.72099 * 83.03966 * 12 11 10 14 14 N 1.46508 * 110.71845 * 206.13410 * 12 11 10 15 15 C 1.36932 * 119.99921 * 273.54516 * 14 12 11 16 16 H 1.08001 * 120.00087 * 0.02562 * 15 14 12 17 17 C 1.38817 * 120.00198 * 179.97438 * 15 14 12 18 18 N 1.31624 * 119.99591 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00343 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46986 * 60.00020 * 19 17 15 21 21 H 1.48499 * 109.47042 * 300.00122 * 19 17 15 22 22 H 1.48501 * 109.47053 * 179.97438 * 19 17 15 23 23 C 1.47020 * 125.64505 * 354.42376 * 9 7 6 24 24 H 1.08998 * 109.88696 * 300.44891 * 23 9 7 25 25 C 1.53000 * 109.87973 * 61.61324 * 23 9 7 26 26 C 1.39615 * 118.21605 * 359.48157 * 6 5 4 27 27 C 1.38844 * 118.94982 * 0.25173 * 26 6 5 28 28 O 1.35682 * 119.62095 * 179.97438 * 27 26 6 29 29 N 1.31880 * 119.51061 * 305.00298 * 4 3 2 30 30 H 1.09001 * 109.46725 * 299.99664 * 1 2 3 31 31 H 1.08992 * 109.47070 * 59.99973 * 1 2 3 32 32 H 1.09001 * 109.47039 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46525 * 239.99885 * 2 1 3 34 34 H 1.09006 * 109.46958 * 119.99902 * 2 1 3 35 35 H 1.08996 * 109.47635 * 60.00564 * 3 2 1 36 36 H 1.08999 * 109.47559 * 299.99566 * 3 2 1 37 37 H 1.08000 * 120.43324 * 0.02562 * 5 4 3 38 38 H 1.09000 * 110.37136 * 37.06304 * 10 9 7 39 39 H 1.08998 * 110.45795 * 274.78477 * 10 9 7 40 40 H 1.08999 * 111.00382 * 278.93356 * 11 10 9 41 41 H 1.08995 * 111.00177 * 155.08055 * 11 10 9 42 42 H 0.96993 * 119.99604 * 93.55264 * 14 12 11 43 43 H 0.97001 * 119.99878 * 359.97438 * 18 17 15 44 44 H 1.09006 * 109.47239 * 194.94765 * 25 23 9 45 45 H 1.08993 * 109.47367 * 314.94814 * 25 23 9 46 46 H 1.08997 * 109.47245 * 74.95496 * 25 23 9 47 47 H 1.08001 * 120.51926 * 180.22292 * 26 6 5 48 48 H 0.96705 * 113.99709 * 90.00193 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.2265 2.1364 -0.9814 6 6 5.6258 2.1266 -0.9775 7 6 6.3944 2.8536 -2.0146 8 8 5.8477 3.6985 -2.6956 9 7 7.7001 2.5776 -2.2031 10 6 8.5513 3.1363 -3.2693 11 6 9.9952 3.0370 -2.7170 12 6 9.9442 1.6879 -1.9525 13 1 10.1008 0.8521 -2.6344 14 7 10.9344 1.6662 -0.8729 15 6 12.2200 1.2717 -1.1309 16 1 12.5042 0.9770 -2.1303 17 6 13.1584 1.2516 -0.1081 18 7 12.8122 1.6113 1.1097 19 14 14.9124 0.7142 -0.4602 20 1 15.5109 1.6142 -1.4785 21 1 14.9097 -0.6798 -0.9720 22 1 15.7111 0.7815 0.7899 23 6 8.5113 1.6691 -1.3796 24 1 8.5208 2.0145 -0.3459 25 6 7.9404 0.2515 -1.4523 26 6 6.2781 1.4183 0.0335 27 6 5.5179 0.7519 0.9853 28 8 6.1378 0.0589 1.9735 29 7 4.1971 0.7840 0.9391 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.6853 2.6767 -1.7440 38 1 8.2882 4.1769 -3.4587 39 1 8.4531 2.5488 -4.1822 40 1 10.2117 3.8625 -2.0388 41 1 10.7220 2.9991 -3.5283 42 1 10.6792 1.9311 0.0246 43 1 11.9014 1.8907 1.2925 44 1 8.3668 -0.3535 -0.6521 45 1 6.8569 0.2900 -1.3407 46 1 8.1910 -0.1921 -2.4159 47 1 7.3569 1.3889 0.0743 48 1 6.3179 0.5816 2.7669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987137017.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:08 Heat of formation + Delta-G solvation = -0.329157 kcal Electronic energy + Delta-G solvation = -29292.794455 eV Core-core repulsion = 25349.471020 eV Total energy + Delta-G solvation = -3943.323434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.40478 -39.80677 -37.93929 -37.35069 -35.29065 -34.54810 -33.37779 -31.65317 -31.37376 -30.40270 -29.10570 -27.12985 -25.41127 -24.79562 -23.24522 -23.08885 -22.46271 -21.35700 -20.64724 -19.63261 -18.57659 -17.54860 -17.34084 -16.55019 -16.41648 -16.00510 -15.83586 -15.18407 -14.98339 -14.72272 -14.60389 -14.26227 -13.90641 -13.71697 -13.57599 -13.32619 -13.11517 -12.79241 -12.65106 -12.32454 -12.20344 -12.02061 -11.87875 -11.75833 -11.63620 -11.49399 -11.39955 -11.07906 -10.93346 -10.74306 -10.72128 -10.41724 -10.32264 -10.06173 -9.87013 -9.51080 -9.30559 -9.05968 -8.85838 -8.67348 -7.21992 -6.23394 -3.26311 0.51110 0.76438 2.66673 2.81962 3.26234 3.45604 3.48013 3.58585 3.65746 4.11816 4.21719 4.53572 4.64280 4.69786 4.76687 4.78979 4.80618 4.89421 4.98543 5.11882 5.15126 5.22162 5.29707 5.35641 5.40044 5.47535 5.50386 5.53028 5.58059 5.63025 5.63972 5.73854 5.78209 5.85060 5.93068 5.96672 6.05887 6.07451 6.10619 6.21297 6.27783 6.31153 6.43860 6.70562 7.30903 7.42591 7.67065 7.68824 7.99126 8.60980 9.03513 9.90291 10.02644 11.24167 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017397 B = 0.002908 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.112522 B = 9625.353056 C =10802.006323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.067 4.067 4 C 0.142 3.858 5 C -0.124 4.124 6 C -0.073 4.073 7 C 0.574 3.426 8 O -0.536 6.536 9 N -0.598 5.598 10 C 0.106 3.894 11 C -0.155 4.155 12 C 0.184 3.816 13 H 0.070 0.930 14 N -0.725 5.725 15 C -0.336 4.336 16 H 0.067 0.933 17 C -0.040 4.040 18 N -0.939 5.939 19 Si 1.080 2.920 20 H -0.294 1.294 21 H -0.294 1.294 22 H -0.284 1.284 23 C 0.108 3.892 24 H 0.086 0.914 25 C -0.176 4.176 26 C -0.171 4.171 27 C 0.304 3.696 28 O -0.476 6.476 29 N -0.483 5.483 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.148 0.852 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.368 0.632 43 H 0.255 0.745 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.178 0.822 48 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.772 -0.592 -3.046 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.105 4.105 4 C 0.004 3.996 5 C -0.144 4.144 6 C -0.084 4.084 7 C 0.362 3.638 8 O -0.414 6.414 9 N -0.331 5.331 10 C -0.016 4.016 11 C -0.196 4.196 12 C 0.072 3.928 13 H 0.088 0.912 14 N -0.367 5.367 15 C -0.467 4.467 16 H 0.085 0.915 17 C -0.238 4.238 18 N -0.583 5.583 19 Si 0.910 3.090 20 H -0.222 1.222 21 H -0.221 1.221 22 H -0.210 1.210 23 C 0.004 3.996 24 H 0.103 0.897 25 C -0.233 4.233 26 C -0.192 4.192 27 C 0.125 3.875 28 O -0.283 6.283 29 N -0.203 5.203 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.166 0.834 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.202 0.798 43 H 0.066 0.934 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.194 0.806 48 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -18.937 -1.380 -2.647 19.171 hybrid contribution -0.941 1.064 -0.673 1.572 sum -19.878 -0.316 -3.320 20.156 Atomic orbital electron populations 1.21781 0.95567 1.01791 1.01786 1.21452 0.95575 0.95501 1.03027 1.20607 0.87686 0.98682 1.03514 1.20913 0.96601 0.92413 0.89716 1.22063 0.93007 0.99578 0.99787 1.20178 0.94157 0.98187 0.95830 1.17726 0.80571 0.82419 0.83070 1.90760 1.69062 1.33104 1.48496 1.48423 1.08308 1.44885 1.31487 1.22346 0.90302 0.99218 0.89774 1.23580 0.93358 1.01501 1.01195 1.21218 0.85282 0.95389 0.90887 0.91191 1.42324 1.07541 1.80626 1.06242 1.19979 0.87035 1.42568 0.97077 0.91483 1.25802 1.04513 1.00473 0.92990 1.70911 1.20207 1.47060 1.20150 0.83247 0.74830 0.75696 0.75236 1.22168 1.22128 1.20986 1.22345 0.92887 0.89496 0.94860 0.89688 1.22746 1.01253 0.95645 1.03674 1.23633 1.04862 0.95709 0.94978 1.18946 0.86512 0.91488 0.90561 1.84823 1.76855 1.39123 1.27482 1.66744 1.10095 1.17860 1.25575 0.92615 0.92734 0.92620 0.92132 0.90739 0.89708 0.89928 0.83406 0.90571 0.91387 0.90654 0.90125 0.79842 0.93388 0.90238 0.91472 0.91781 0.80593 0.74005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.63 16 2 C -0.12 -0.98 5.79 -26.73 -0.15 -1.14 16 3 C -0.07 -0.57 5.61 -27.88 -0.16 -0.72 16 4 C 0.14 1.62 6.18 -82.65 -0.51 1.11 16 5 C -0.12 -1.51 9.27 -39.03 -0.36 -1.87 16 6 C -0.07 -1.00 5.08 -104.68 -0.53 -1.53 16 7 C 0.57 8.99 7.64 -12.18 -0.09 8.90 16 8 O -0.54 -9.60 16.79 5.36 0.09 -9.51 16 9 N -0.60 -9.03 3.06 -164.00 -0.50 -9.53 16 10 C 0.11 1.53 6.93 -2.53 -0.02 1.51 16 11 C -0.16 -2.51 6.77 -24.58 -0.17 -2.68 16 12 C 0.18 3.28 3.11 -66.09 -0.21 3.07 16 13 H 0.07 1.27 7.59 -51.93 -0.39 0.88 16 14 N -0.73 -16.33 5.25 -51.65 -0.27 -16.61 16 15 C -0.34 -8.71 9.98 -15.06 -0.15 -8.86 16 16 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 17 C -0.04 -1.08 5.50 -17.43 -0.10 -1.18 16 18 N -0.94 -27.45 13.70 55.49 0.76 -26.69 16 19 Si 1.08 24.67 29.92 -169.99 -5.09 19.58 16 20 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.11 1.64 2.49 -66.95 -0.17 1.47 16 24 H 0.09 1.32 5.71 -51.93 -0.30 1.02 16 25 C -0.18 -2.47 7.83 37.16 0.29 -2.18 16 26 C -0.17 -2.26 6.29 -38.84 -0.24 -2.50 16 27 C 0.30 3.96 7.74 -17.17 -0.13 3.83 16 28 O -0.48 -5.69 13.56 -18.75 -0.25 -5.95 16 29 N -0.48 -6.24 9.87 -9.59 -0.09 -6.33 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.72 7.94 -51.93 -0.41 0.31 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.56 7.86 -51.93 -0.41 0.15 16 37 H 0.15 1.63 7.71 -52.49 -0.40 1.23 16 38 H 0.08 1.10 7.99 -51.93 -0.41 0.68 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.37 8.55 6.34 -40.82 -0.26 8.29 16 43 H 0.25 7.26 6.77 -40.82 -0.28 6.99 16 44 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.07 0.92 4.26 -51.93 -0.22 0.70 16 46 H 0.06 0.88 7.75 -51.93 -0.40 0.48 16 47 H 0.18 2.37 2.79 -52.49 -0.15 2.22 16 48 H 0.40 2.94 9.06 45.56 0.41 3.35 16 LS Contribution 382.45 15.07 5.76 5.76 Total: -1.00 -32.21 382.45 -8.16 -40.37 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -6.23 Total: 12.29 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -2.33 Total: -3.39 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.11 Total: -59.16 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.16 Total: -15.46 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.09 Total: 19.58 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.21 -8.16 -40.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987137017.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.042 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds