Wall clock time and date at job start Tue Mar 31 2020 18:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46884 * 2 1 4 4 N 1.29933 * 125.37944 * 89.99938 * 3 2 1 5 5 C 1.36068 * 108.47903 * 180.02562 * 4 3 2 6 6 C 1.47410 * 126.44963 * 179.97438 * 5 4 3 7 7 O 1.21620 * 120.00091 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00377 * 0.02835 * 6 5 4 9 9 C 1.48246 * 125.78145 * 359.97438 * 8 6 5 10 10 C 1.52332 * 105.86615 * 176.81239 * 9 8 6 11 11 H 1.09000 * 110.24236 * 272.17805 * 10 9 8 12 12 C 1.51442 * 117.45129 * 145.32067 * 10 9 8 13 13 C 1.53839 * 107.04272 * 181.22652 * 12 10 9 14 14 C 1.52529 * 111.65684 * 57.20106 * 13 12 10 15 15 C 1.53824 * 111.70276 * 305.95125 * 14 13 12 16 16 H 1.09004 * 109.94185 * 298.08158 * 15 14 13 17 17 N 1.46496 * 109.94295 * 176.91592 * 15 14 13 18 18 C 1.36945 * 119.99718 * 85.00360 * 17 15 14 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.51618 * 107.02043 * 57.53899 * 15 14 13 27 27 H 1.09009 * 110.50434 * 55.20166 * 26 15 14 28 28 C 1.48665 * 125.79081 * 179.97438 * 8 6 5 29 29 C 1.36092 * 107.09924 * 0.26388 * 5 4 3 30 30 O 1.34053 * 125.37719 * 270.03678 * 3 2 1 31 31 H 1.09004 * 109.47118 * 60.00599 * 1 2 3 32 32 H 1.09004 * 109.47132 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47635 * 300.00143 * 1 2 3 34 34 H 1.09004 * 109.47174 * 240.00050 * 2 1 3 35 35 H 1.09001 * 109.46805 * 120.00088 * 2 1 3 36 36 H 1.09007 * 110.17392 * 57.71721 * 9 8 6 37 37 H 1.08993 * 110.17395 * 295.91644 * 9 8 6 38 38 H 1.09004 * 109.93942 * 61.84457 * 12 10 9 39 39 H 1.09002 * 109.93740 * 300.61258 * 12 10 9 40 40 H 1.09004 * 109.04294 * 296.64329 * 13 12 10 41 41 H 1.08991 * 109.04576 * 177.75829 * 13 12 10 42 42 H 1.09000 * 109.03374 * 185.38437 * 14 13 12 43 43 H 1.08995 * 108.97548 * 66.48426 * 14 13 12 44 44 H 0.96996 * 120.00499 * 265.00091 * 17 15 14 45 45 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 46 46 H 1.08997 * 110.62191 * 37.13184 * 28 8 6 47 47 H 1.08997 * 110.76272 * 274.18044 * 28 8 6 48 48 H 1.08000 * 126.52381 * 179.72908 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2830 2.1301 1.0594 5 6 2.7164 3.3578 0.6638 6 6 3.1098 4.4731 1.5438 7 8 3.4811 5.5261 1.0617 8 7 3.0582 4.3259 2.8824 9 6 2.6273 3.1048 3.6042 10 6 2.8205 3.4062 5.0848 11 1 3.8344 3.1504 5.3926 12 6 1.8222 2.8096 6.0548 13 6 2.2207 3.2864 7.4622 14 6 2.2604 4.8086 7.5506 15 6 3.1641 5.4180 6.4652 16 1 4.1893 5.0723 6.5978 17 7 3.1166 6.8804 6.5386 18 6 3.9388 7.5494 7.4056 19 1 4.6219 6.9990 8.0354 20 6 3.8942 8.9350 7.4748 21 7 3.0613 9.6059 6.7076 22 14 5.0153 9.8477 8.6579 23 1 4.7758 11.3084 8.5397 24 1 4.7299 9.4096 10.0478 25 1 6.4320 9.5505 8.3263 26 6 2.6276 4.9498 5.1266 27 1 1.5736 5.2090 5.0258 28 6 3.4238 5.3604 3.8856 29 6 2.7120 3.3644 -0.6971 30 8 2.2903 2.1528 -1.0930 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.2449 2.2563 3.3097 37 1 1.5777 2.8963 3.3969 38 1 1.8613 1.7213 6.0061 39 1 0.8174 3.1575 5.8151 40 1 3.2065 2.8902 7.7060 41 1 1.4978 2.9070 8.1842 42 1 2.6380 5.0980 8.5312 43 1 1.2491 5.1970 7.4305 44 1 2.5028 7.3748 5.9732 45 1 3.0299 10.5742 6.7563 46 1 3.1201 6.3501 3.5446 47 1 4.4940 5.3380 4.0912 48 1 2.9961 4.1868 -1.3368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992675065.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:42 Heat of formation + Delta-G solvation = -6.834647 kcal Electronic energy + Delta-G solvation = -29219.623714 eV Core-core repulsion = 25276.018180 eV Total energy + Delta-G solvation = -3943.605534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.65473 -40.25802 -38.49620 -35.56237 -35.18613 -34.24256 -33.93425 -31.48218 -30.56552 -29.67879 -28.86710 -26.70791 -25.42023 -24.69826 -23.66949 -22.82709 -21.51155 -20.73899 -20.29662 -19.69683 -19.54945 -17.73941 -17.08633 -17.06383 -16.52917 -15.90138 -15.33437 -15.03385 -14.83105 -14.80187 -14.20192 -14.18273 -13.99651 -13.77622 -13.53053 -13.13159 -12.98646 -12.82477 -12.43619 -12.35958 -12.23360 -12.06279 -11.85792 -11.66260 -11.45223 -11.41198 -10.96462 -10.89642 -10.84840 -10.70169 -10.46030 -10.21299 -10.18170 -10.12263 -10.02361 -9.72696 -9.41735 -9.25365 -8.84911 -8.45273 -6.92873 -5.72780 -3.01922 0.93347 1.83372 2.31556 2.95717 3.30727 3.46450 3.50978 3.51983 3.57772 4.35339 4.47095 4.59227 4.63814 4.67330 4.75149 4.90046 4.91223 5.03648 5.29322 5.31604 5.35196 5.36804 5.47047 5.51919 5.55571 5.60231 5.62664 5.66836 5.70540 5.82388 5.86176 5.93633 5.97285 6.02024 6.12458 6.17662 6.22107 6.27877 6.38060 6.49646 6.59775 6.65537 6.68328 6.89970 7.12932 7.26041 7.61639 7.72843 8.18321 8.45272 9.56549 10.13546 10.48229 11.49577 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017288 B = 0.002859 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.248205 B = 9791.323024 C =11081.064715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.026 4.026 3 C 0.192 3.808 4 N -0.453 5.453 5 C -0.061 4.061 6 C 0.609 3.391 7 O -0.538 6.538 8 N -0.604 5.604 9 C 0.128 3.872 10 C -0.110 4.110 11 H 0.081 0.919 12 C -0.098 4.098 13 C -0.114 4.114 14 C -0.138 4.138 15 C 0.196 3.804 16 H 0.050 0.950 17 N -0.722 5.722 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.292 1.292 24 H -0.287 1.287 25 H -0.286 1.286 26 C -0.103 4.103 27 H 0.081 0.919 28 C 0.125 3.875 29 C 0.007 3.993 30 O -0.198 6.198 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.085 0.915 47 H 0.074 0.926 48 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.980 -23.178 -12.936 27.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.064 4.064 3 C -0.017 4.017 4 N -0.183 5.183 5 C -0.181 4.181 6 C 0.396 3.604 7 O -0.416 6.416 8 N -0.336 5.336 9 C 0.006 3.994 10 C -0.130 4.130 11 H 0.099 0.901 12 C -0.136 4.136 13 C -0.153 4.153 14 C -0.179 4.179 15 C 0.086 3.914 16 H 0.068 0.932 17 N -0.363 5.363 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.214 1.214 25 H -0.213 1.213 26 C -0.122 4.122 27 H 0.099 0.901 28 C 0.004 3.996 29 C -0.066 4.066 30 O -0.084 6.084 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.126 0.874 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.104 0.896 47 H 0.093 0.907 48 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -4.713 -22.725 -12.532 26.376 hybrid contribution 0.486 1.098 -0.145 1.209 sum -4.227 -21.628 -12.677 25.423 Atomic orbital electron populations 1.21797 0.92924 1.03088 1.03140 1.20101 0.96963 0.83958 1.05350 1.26414 0.99816 0.97048 0.78451 1.70899 1.15330 1.02594 1.29461 1.21805 1.09162 0.94203 0.92917 1.16347 0.78302 0.85120 0.80626 1.90854 1.48849 1.27334 1.74575 1.48975 1.64094 1.16262 1.04309 1.21705 1.00490 0.86627 0.90600 1.21946 1.00897 0.96763 0.93395 0.90068 1.21264 0.98302 0.99359 0.94652 1.21552 1.00814 0.97255 0.95633 1.22312 1.01215 0.92860 1.01472 1.19970 0.96224 0.85707 0.89547 0.93176 1.42406 1.46862 0.99236 1.47753 1.19164 1.14131 0.89253 1.14478 0.91276 1.24731 0.99708 0.96439 0.99934 1.69651 1.39664 1.06666 1.41987 0.86303 0.80405 0.78946 0.80732 1.21763 1.21353 1.21300 1.22366 1.00444 0.94218 0.95217 0.90093 1.22014 0.99623 0.91563 0.86401 1.25274 0.99127 0.86487 0.95731 1.84376 1.63611 1.22415 1.37980 0.92150 0.90791 0.91546 0.88812 0.87405 0.90830 0.91115 0.92119 0.91781 0.92584 0.92753 0.92034 0.92770 0.78194 0.93472 0.89615 0.90745 0.75333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.89 37.16 0.37 -0.35 16 2 C -0.03 -0.14 6.56 -27.88 -0.18 -0.32 16 3 C 0.19 1.83 7.56 -13.08 -0.10 1.73 16 4 N -0.45 -5.46 8.89 -7.66 -0.07 -5.53 16 5 C -0.06 -0.83 6.83 -83.03 -0.57 -1.40 16 6 C 0.61 10.20 7.86 -12.53 -0.10 10.10 16 7 O -0.54 -10.59 17.18 5.26 0.09 -10.50 16 8 N -0.60 -9.67 3.38 -172.13 -0.58 -10.26 16 9 C 0.13 1.69 5.24 -3.42 -0.02 1.67 16 10 C -0.11 -1.45 2.31 -90.36 -0.21 -1.66 16 11 H 0.08 1.07 7.92 -51.93 -0.41 0.66 16 12 C -0.10 -1.14 5.70 -27.08 -0.15 -1.30 16 13 C -0.11 -1.49 5.83 -26.54 -0.15 -1.64 16 14 C -0.14 -2.35 5.45 -26.54 -0.14 -2.50 16 15 C 0.20 3.74 2.51 -68.20 -0.17 3.57 16 16 H 0.05 0.99 7.94 -51.93 -0.41 0.57 16 17 N -0.72 -17.71 5.10 -53.69 -0.27 -17.98 16 18 C -0.24 -6.55 9.95 -15.06 -0.15 -6.70 16 19 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 22 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 26 C -0.10 -1.68 1.99 -89.90 -0.18 -1.86 16 27 H 0.08 1.39 8.01 -51.92 -0.42 0.97 16 28 C 0.12 2.21 6.49 -2.82 -0.02 2.19 16 29 C 0.01 0.08 11.95 29.96 0.36 0.44 16 30 O -0.20 -1.97 10.73 6.51 0.07 -1.90 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.93 7.56 -51.93 -0.39 0.54 16 37 H 0.07 0.92 7.83 -51.93 -0.41 0.51 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.76 8.03 -51.93 -0.42 0.34 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.38 10.16 7.79 -40.82 -0.32 9.85 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.09 1.73 8.07 -51.93 -0.42 1.31 16 47 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 48 H 0.23 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 387.75 15.07 5.84 5.84 Total: -1.00 -33.13 387.75 -8.55 -41.67 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -7.81 Total: 7.18 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -1.52 Total: 1.52 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -0.20 Total: -61.33 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.16 Total: -12.40 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.13 -8.55 -41.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992675065.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.839 kcal (2) G-P(sol) polarization free energy of solvation -33.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds