Wall clock time and date at job start Tue Mar 31 2020 18:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46884 * 2 1 4 4 N 1.29933 * 125.37944 * 89.99938 * 3 2 1 5 5 C 1.36068 * 108.47903 * 180.02562 * 4 3 2 6 6 C 1.47410 * 126.44963 * 179.97438 * 5 4 3 7 7 O 1.21620 * 120.00091 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00377 * 0.02835 * 6 5 4 9 9 C 1.48246 * 125.78145 * 359.97438 * 8 6 5 10 10 C 1.52332 * 105.86615 * 176.81239 * 9 8 6 11 11 H 1.09000 * 110.24236 * 272.17805 * 10 9 8 12 12 C 1.51442 * 117.45129 * 145.32067 * 10 9 8 13 13 C 1.53839 * 107.04272 * 181.22652 * 12 10 9 14 14 C 1.52529 * 111.65684 * 57.20106 * 13 12 10 15 15 C 1.53824 * 111.70276 * 305.95125 * 14 13 12 16 16 H 1.09004 * 109.94185 * 298.08158 * 15 14 13 17 17 N 1.46496 * 109.94295 * 176.91592 * 15 14 13 18 18 C 1.36945 * 119.99718 * 85.00360 * 17 15 14 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.51618 * 107.02043 * 57.53899 * 15 14 13 27 27 H 1.09009 * 110.50434 * 55.20166 * 26 15 14 28 28 C 1.48665 * 125.79081 * 179.97438 * 8 6 5 29 29 C 1.36092 * 107.09924 * 0.26388 * 5 4 3 30 30 O 1.34053 * 125.37719 * 270.03678 * 3 2 1 31 31 H 1.09004 * 109.47118 * 60.00599 * 1 2 3 32 32 H 1.09004 * 109.47132 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47635 * 300.00143 * 1 2 3 34 34 H 1.09004 * 109.47174 * 240.00050 * 2 1 3 35 35 H 1.09001 * 109.46805 * 120.00088 * 2 1 3 36 36 H 1.09007 * 110.17392 * 57.71721 * 9 8 6 37 37 H 1.08993 * 110.17395 * 295.91644 * 9 8 6 38 38 H 1.09004 * 109.93942 * 61.84457 * 12 10 9 39 39 H 1.09002 * 109.93740 * 300.61258 * 12 10 9 40 40 H 1.09004 * 109.04294 * 296.64329 * 13 12 10 41 41 H 1.08991 * 109.04576 * 177.75829 * 13 12 10 42 42 H 1.09000 * 109.03374 * 185.38437 * 14 13 12 43 43 H 1.08995 * 108.97548 * 66.48426 * 14 13 12 44 44 H 0.96996 * 120.00499 * 265.00091 * 17 15 14 45 45 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 46 46 H 1.08997 * 110.62191 * 37.13184 * 28 8 6 47 47 H 1.08997 * 110.76272 * 274.18044 * 28 8 6 48 48 H 1.08000 * 126.52381 * 179.72908 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2830 2.1301 1.0594 5 6 2.7164 3.3578 0.6638 6 6 3.1098 4.4731 1.5438 7 8 3.4811 5.5261 1.0617 8 7 3.0582 4.3259 2.8824 9 6 2.6273 3.1048 3.6042 10 6 2.8205 3.4062 5.0848 11 1 3.8344 3.1504 5.3926 12 6 1.8222 2.8096 6.0548 13 6 2.2207 3.2864 7.4622 14 6 2.2604 4.8086 7.5506 15 6 3.1641 5.4180 6.4652 16 1 4.1893 5.0723 6.5978 17 7 3.1166 6.8804 6.5386 18 6 3.9388 7.5494 7.4056 19 1 4.6219 6.9990 8.0354 20 6 3.8942 8.9350 7.4748 21 7 3.0613 9.6059 6.7076 22 14 5.0153 9.8477 8.6579 23 1 4.7758 11.3084 8.5397 24 1 4.7299 9.4096 10.0478 25 1 6.4320 9.5505 8.3263 26 6 2.6276 4.9498 5.1266 27 1 1.5736 5.2090 5.0258 28 6 3.4238 5.3604 3.8856 29 6 2.7120 3.3644 -0.6971 30 8 2.2903 2.1528 -1.0930 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.2449 2.2563 3.3097 37 1 1.5777 2.8963 3.3969 38 1 1.8613 1.7213 6.0061 39 1 0.8174 3.1575 5.8151 40 1 3.2065 2.8902 7.7060 41 1 1.4978 2.9070 8.1842 42 1 2.6380 5.0980 8.5312 43 1 1.2491 5.1970 7.4305 44 1 2.5028 7.3748 5.9732 45 1 3.0299 10.5742 6.7563 46 1 3.1201 6.3501 3.5446 47 1 4.4940 5.3380 4.0912 48 1 2.9961 4.1868 -1.3368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992675065.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:41 Heat of formation + Delta-G solvation = -29.584999 kcal Electronic energy + Delta-G solvation = -29220.610243 eV Core-core repulsion = 25276.018180 eV Total energy + Delta-G solvation = -3944.592063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.49052 -41.55841 -39.83173 -37.00520 -36.05642 -35.57776 -34.82737 -33.28810 -31.82387 -30.64736 -30.36572 -28.10619 -26.66451 -25.51696 -25.17954 -24.06845 -22.39109 -21.90037 -21.60401 -21.05707 -20.62494 -19.21434 -18.65539 -17.92799 -17.59222 -17.18152 -16.65972 -16.52568 -15.73674 -15.71302 -15.59683 -15.40269 -15.24896 -15.03216 -14.75456 -14.45977 -14.18491 -13.88605 -13.63772 -13.54384 -13.43240 -13.27912 -12.85742 -12.80337 -12.61240 -12.59480 -12.35773 -12.24812 -12.03531 -11.99876 -11.90217 -11.83092 -11.72946 -11.48030 -11.36435 -11.23552 -10.88448 -10.81973 -10.17268 -9.73150 -8.98376 -7.92257 -5.20535 0.01247 0.93879 1.45947 1.49051 1.51815 1.54832 1.78316 2.13185 2.56502 2.76490 3.25020 3.40289 3.54807 3.66254 3.74798 3.79099 4.07718 4.20799 4.23472 4.24136 4.29603 4.36970 4.42637 4.48498 4.55332 4.56106 4.59138 4.64513 4.67007 4.70439 4.79559 4.85144 4.91428 5.00682 5.03553 5.08556 5.09193 5.17356 5.27471 5.33918 5.38746 5.39296 5.41874 5.50071 5.53192 5.70091 6.29188 6.30646 6.46514 6.90301 7.35120 8.11690 8.34181 9.31142 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017288 B = 0.002859 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.248205 B = 9791.323024 C =11081.064715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.025 4.025 3 C 0.203 3.797 4 N -0.472 5.472 5 C -0.093 4.093 6 C 0.603 3.397 7 O -0.581 6.581 8 N -0.607 5.607 9 C 0.137 3.863 10 C -0.095 4.095 11 H 0.087 0.913 12 C -0.091 4.091 13 C -0.107 4.107 14 C -0.129 4.129 15 C 0.192 3.808 16 H 0.047 0.953 17 N -0.736 5.736 18 C -0.234 4.234 19 H 0.076 0.924 20 C -0.078 4.078 21 N -0.972 5.972 22 Si 0.969 3.031 23 H -0.299 1.299 24 H -0.276 1.276 25 H -0.279 1.279 26 C -0.097 4.097 27 H 0.072 0.928 28 C 0.129 3.871 29 C 0.026 3.974 30 O -0.193 6.193 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.370 0.630 45 H 0.249 0.751 46 H 0.048 0.952 47 H 0.064 0.936 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.207 -27.241 -13.038 30.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.063 4.063 3 C -0.007 4.007 4 N -0.201 5.201 5 C -0.212 4.212 6 C 0.392 3.608 7 O -0.463 6.463 8 N -0.338 5.338 9 C 0.016 3.984 10 C -0.114 4.114 11 H 0.105 0.895 12 C -0.128 4.128 13 C -0.145 4.145 14 C -0.169 4.169 15 C 0.083 3.917 16 H 0.065 0.935 17 N -0.375 5.375 18 C -0.366 4.366 19 H 0.094 0.906 20 C -0.270 4.270 21 N -0.623 5.623 22 Si 0.799 3.201 23 H -0.225 1.225 24 H -0.202 1.202 25 H -0.206 1.206 26 C -0.117 4.117 27 H 0.091 0.909 28 C 0.007 3.993 29 C -0.049 4.049 30 O -0.079 6.079 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.201 0.799 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.082 0.918 48 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -4.939 -26.879 -12.597 30.092 hybrid contribution 0.539 2.253 -0.191 2.324 sum -4.399 -24.627 -12.788 28.095 Atomic orbital electron populations 1.21789 0.92417 1.04312 1.02145 1.20427 0.97168 0.81407 1.07257 1.27358 0.97740 0.97982 0.77614 1.70831 1.16593 1.02133 1.30582 1.21436 1.12012 0.94363 0.93358 1.16840 0.77491 0.85538 0.80946 1.90814 1.50850 1.29258 1.75342 1.49056 1.63871 1.16644 1.04210 1.21786 1.01083 0.85630 0.89948 1.21958 1.02015 0.93427 0.94003 0.89480 1.21265 0.97497 1.01346 0.92726 1.21492 1.02279 0.93469 0.97262 1.22134 0.99423 0.96231 0.99112 1.20198 0.96734 0.82881 0.91867 0.93515 1.42629 1.46207 1.01586 1.47086 1.19563 1.13538 0.89634 1.13818 0.90565 1.25533 1.01764 0.97518 1.02200 1.69824 1.41923 1.06285 1.44230 0.85267 0.78730 0.77063 0.79066 1.22534 1.20234 1.20572 1.22168 0.99218 0.97221 0.93081 0.90947 1.21767 0.99107 0.90736 0.87710 1.25641 0.97071 0.87073 0.95069 1.84429 1.63398 1.22001 1.38118 0.92650 0.88465 0.93044 0.86321 0.86036 0.89430 0.90394 0.88537 0.91714 0.91462 0.90680 0.93977 0.94041 0.79853 0.94250 0.93305 0.91789 0.73374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 71.98 0.71 -0.25 16 2 C -0.02 -0.17 6.56 29.85 0.20 0.02 16 3 C 0.20 3.35 7.56 88.39 0.67 4.02 16 4 N -0.47 -10.55 8.89 -293.04 -2.60 -13.16 16 5 C -0.09 -2.49 6.83 40.40 0.28 -2.22 16 6 C 0.60 20.81 7.86 86.66 0.68 21.49 16 7 O -0.58 -24.15 17.18 -4.09 -0.07 -24.22 16 8 N -0.61 -19.82 3.38 -816.74 -2.76 -22.58 16 9 C 0.14 3.38 5.24 85.82 0.45 3.83 16 10 C -0.09 -2.30 2.31 -10.62 -0.02 -2.32 16 11 H 0.09 2.08 7.92 -2.39 -0.02 2.06 16 12 C -0.09 -1.79 5.70 30.37 0.17 -1.62 16 13 C -0.11 -2.46 5.83 30.72 0.18 -2.28 16 14 C -0.13 -4.32 5.45 30.72 0.17 -4.15 16 15 C 0.19 7.43 2.51 44.82 0.11 7.54 16 16 H 0.05 1.85 7.94 -2.38 -0.02 1.83 16 17 N -0.74 -37.53 5.10 -323.78 -1.65 -39.18 16 18 C -0.23 -13.10 9.95 84.03 0.84 -12.26 16 19 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 20 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 21 N -0.97 -61.39 13.06 21.65 0.28 -61.11 16 22 Si 0.97 47.32 29.55 68.60 2.03 49.35 16 23 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 25 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 26 C -0.10 -3.24 1.99 -10.33 -0.02 -3.26 16 27 H 0.07 2.56 8.01 -2.38 -0.02 2.54 16 28 C 0.13 4.82 6.49 85.98 0.56 5.38 16 29 C 0.03 0.54 11.95 67.32 0.80 1.34 16 30 O -0.19 -3.43 10.73 0.37 0.00 -3.42 16 31 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.10 0.21 8.14 -2.38 -0.02 0.19 16 33 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.12 0.30 8.14 -2.38 -0.02 0.28 16 35 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.09 1.98 7.56 -2.38 -0.02 1.97 16 37 H 0.08 1.86 7.83 -2.39 -0.02 1.84 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.06 1.32 8.03 -2.39 -0.02 1.31 16 40 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.37 20.72 7.79 -92.71 -0.72 20.00 16 45 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 46 H 0.05 2.16 8.07 -2.39 -0.02 2.14 16 47 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 48 H 0.25 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -75.88 387.75 1.70 -74.18 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: 0.24 Total: 29.02 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 6.23 Total: 11.13 kcal Atomic # 7 Polarization: -129.30 SS G_CDS: -6.73 Total: -136.03 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.07 Total: -27.64 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -75.88 1.70 -74.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992675065.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.593 kcal (2) G-P(sol) polarization free energy of solvation -75.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds