Wall clock time and date at job start Tue Mar 31 2020 18:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.46801 * 2 1 4 4 N 1.33692 * 126.27511 * 270.13442 * 3 2 1 5 5 C 1.30615 * 108.99610 * 180.26079 * 4 3 2 6 6 O 1.33659 * 109.15464 * 359.76583 * 5 4 3 7 7 C 1.35341 * 107.68620 * 0.02562 * 6 5 4 8 8 C 1.46716 * 126.64373 * 179.97438 * 7 6 5 9 9 O 1.21696 * 119.99923 * 180.02562 * 8 7 6 10 10 N 1.34775 * 120.00521 * 0.02562 * 8 7 6 11 11 C 1.47623 * 125.72138 * 0.02954 * 10 8 7 12 12 C 1.55839 * 104.46734 * 204.84150 * 11 10 8 13 13 H 1.08999 * 113.43413 * 201.16057 * 12 11 10 14 14 C 1.52997 * 106.36641 * 77.05979 * 12 11 10 15 15 C 1.52620 * 110.92965 * 198.10619 * 14 12 11 16 16 C 1.53303 * 108.50503 * 62.21057 * 15 14 12 17 17 C 1.52845 * 108.24827 * 296.18215 * 16 15 14 18 18 H 1.09006 * 109.05734 * 298.54132 * 17 16 15 19 19 N 1.46499 * 109.05792 * 179.61565 * 17 16 15 20 20 C 1.36941 * 120.00097 * 85.00267 * 19 17 16 21 21 H 1.08009 * 119.99831 * 359.97438 * 20 19 17 22 22 C 1.38813 * 120.00132 * 179.97438 * 20 19 17 23 23 N 1.31613 * 119.99926 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99838 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47100 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47280 * 120.00124 * 24 22 20 27 27 H 1.48501 * 109.46888 * 239.99993 * 24 22 20 28 28 C 1.50976 * 111.52021 * 59.03186 * 17 16 15 29 29 H 1.08995 * 108.31100 * 186.71288 * 28 17 16 30 30 C 1.47419 * 125.72791 * 179.97438 * 10 8 7 31 31 H 1.09006 * 109.46957 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47486 * 299.99729 * 1 2 3 33 33 H 1.09003 * 109.47097 * 60.00189 * 1 2 3 34 34 H 1.09002 * 109.47246 * 239.99977 * 2 1 3 35 35 H 1.08993 * 109.47060 * 119.99789 * 2 1 3 36 36 H 1.08009 * 125.42523 * 179.78878 * 5 4 3 37 37 H 1.08996 * 110.43396 * 86.09994 * 11 10 8 38 38 H 1.08997 * 110.43318 * 323.59374 * 11 10 8 39 39 H 1.08994 * 109.18354 * 77.73531 * 14 12 11 40 40 H 1.09001 * 109.18329 * 318.48284 * 14 12 11 41 41 H 1.08991 * 109.63801 * 302.50406 * 15 14 12 42 42 H 1.08999 * 109.63267 * 181.90849 * 15 14 12 43 43 H 1.09002 * 109.71650 * 55.88348 * 16 15 14 44 44 H 1.09001 * 109.71373 * 176.48220 * 16 15 14 45 45 H 0.96994 * 120.00160 * 264.99359 * 19 17 16 46 46 H 0.96997 * 120.00217 * 180.02562 * 23 22 20 47 47 H 1.09005 * 110.05025 * 60.09218 * 30 10 8 48 48 H 1.09002 * 110.05699 * 298.61501 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2935 2.1674 -1.0778 5 6 2.7153 3.3411 -0.6899 6 8 2.7315 3.3818 0.6460 7 6 2.3017 2.1812 1.0992 8 6 2.1583 1.7748 2.5016 9 8 1.7587 0.6580 2.7737 10 7 2.4690 2.6382 3.4887 11 6 2.9621 4.0174 3.3039 12 6 3.7490 4.3282 4.6126 13 1 3.8663 5.3946 4.8050 14 6 5.0923 3.6061 4.4897 15 6 5.7591 3.4590 5.8546 16 6 4.8560 2.6002 6.7473 17 6 3.5415 3.3503 6.9610 18 1 3.7481 4.2938 7.4663 19 7 2.6602 2.5401 7.8056 20 6 2.7711 2.6026 9.1691 21 1 3.5086 3.2490 9.6218 22 6 1.9358 1.8354 9.9693 23 7 1.0368 1.0481 9.4176 24 14 2.0876 1.9202 11.8292 25 1 3.1668 2.8725 12.1948 26 1 0.8015 2.3819 12.4103 27 1 2.4157 0.5730 12.3610 28 6 2.8468 3.6347 5.6511 29 1 1.9845 4.2703 5.8517 30 6 2.3726 2.3644 4.9340 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.0046 4.1502 -1.3443 37 1 2.1267 4.7080 3.1891 38 1 3.6239 4.0723 2.4396 39 1 5.7467 4.1768 3.8309 40 1 4.9293 2.6168 4.0621 41 1 5.8912 4.4424 6.3056 42 1 6.7278 2.9731 5.7385 43 1 4.6593 1.6448 6.2608 44 1 5.3427 2.4303 7.7077 45 1 1.9981 1.9595 7.3990 46 1 0.4529 0.5123 9.9768 47 1 3.0146 1.5242 5.1988 48 1 1.3397 2.1458 5.2050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992799783.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:26 Heat of formation + Delta-G solvation = -5.366573 kcal Electronic energy + Delta-G solvation = -29900.668520 eV Core-core repulsion = 25957.126647 eV Total energy + Delta-G solvation = -3943.541873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.67898 -40.56680 -38.60124 -36.10284 -35.31415 -33.84788 -33.12176 -31.62301 -30.98954 -29.74419 -28.86287 -26.69892 -25.41323 -24.11740 -23.72670 -23.13912 -21.79838 -21.31565 -20.77799 -19.96151 -18.52438 -17.77317 -17.14140 -17.02986 -16.68364 -15.91382 -15.72735 -15.14549 -15.06188 -14.51297 -14.26726 -14.00720 -13.81486 -13.65532 -13.55074 -13.31831 -12.92679 -12.86965 -12.81545 -12.43999 -11.94312 -11.73313 -11.67635 -11.42561 -11.30683 -11.20272 -11.16720 -11.02499 -10.96535 -10.88765 -10.78535 -10.25848 -10.16382 -10.12429 -9.95397 -9.70752 -9.55391 -9.21904 -8.88590 -8.57898 -6.97543 -5.76974 -3.06526 0.64378 2.20533 2.22815 2.96324 3.00895 3.42778 3.48247 3.50747 3.76418 4.33072 4.44747 4.48534 4.55773 4.80292 4.81704 5.04554 5.19730 5.26104 5.27595 5.30119 5.34263 5.38205 5.42997 5.54421 5.55958 5.62899 5.71256 5.73350 5.80656 5.83107 5.89295 5.92214 6.01021 6.06545 6.07818 6.15579 6.19374 6.26308 6.30088 6.37315 6.44611 6.56025 6.69962 6.89372 7.08826 7.25106 7.43307 7.69812 7.96112 8.40828 9.52236 10.08401 10.42762 11.45434 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016637 B = 0.003148 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.622802 B = 8893.525530 C =10090.279824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.052 4.052 3 C 0.078 3.922 4 N -0.491 5.491 5 C 0.191 3.809 6 O -0.188 6.188 7 C -0.100 4.100 8 C 0.614 3.386 9 O -0.509 6.509 10 N -0.603 5.603 11 C 0.099 3.901 12 C -0.090 4.090 13 H 0.100 0.900 14 C -0.110 4.110 15 C -0.117 4.117 16 C -0.136 4.136 17 C 0.191 3.809 18 H 0.052 0.948 19 N -0.727 5.727 20 C -0.239 4.239 21 H 0.071 0.929 22 C -0.012 4.012 23 N -0.930 5.930 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.095 4.095 29 H 0.078 0.922 30 C 0.119 3.881 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.254 0.746 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.080 0.920 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.578 7.409 -20.786 22.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.090 4.090 3 C -0.046 4.046 4 N -0.220 5.220 5 C -0.034 4.034 6 O -0.074 6.074 7 C -0.155 4.155 8 C 0.401 3.599 9 O -0.386 6.386 10 N -0.336 5.336 11 C -0.024 4.024 12 C -0.109 4.109 13 H 0.119 0.881 14 C -0.148 4.148 15 C -0.155 4.155 16 C -0.177 4.177 17 C 0.080 3.920 18 H 0.070 0.930 19 N -0.368 5.368 20 C -0.370 4.370 21 H 0.089 0.911 22 C -0.208 4.208 23 N -0.579 5.579 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.115 4.115 29 H 0.096 0.904 30 C -0.002 4.002 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.270 0.730 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.099 0.901 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.304 6.671 -21.067 22.726 hybrid contribution -0.043 0.282 1.373 1.402 sum 5.261 6.952 -19.694 21.538 Atomic orbital electron populations 1.21636 0.93743 1.02380 1.01966 1.20168 0.96738 0.87707 1.04400 1.22046 0.97988 0.98249 0.86273 1.70330 1.16866 1.03274 1.31508 1.28311 0.97634 0.97661 0.79799 1.84598 1.64463 1.34202 1.24090 1.22982 1.11314 0.85040 0.96202 1.15942 0.78935 0.84223 0.80763 1.90903 1.47108 1.19189 1.81445 1.48514 1.63913 1.14053 1.07087 1.22779 0.98081 0.82507 0.99001 1.22404 0.94904 1.00280 0.93337 0.88144 1.21495 0.95093 1.00346 0.97862 1.21521 0.98256 1.00435 0.95321 1.22319 0.97463 0.98832 0.99052 1.19658 0.89463 0.94585 0.88251 0.92991 1.42511 1.40844 1.50605 1.02809 1.19261 1.14810 1.20525 0.82453 0.91113 1.24741 0.98680 0.99568 0.97856 1.69665 1.23694 1.30532 1.33968 0.86153 0.77149 0.77180 0.85905 1.20592 1.21927 1.21912 1.21731 0.98849 0.95608 0.95318 0.90351 1.21989 1.02565 0.99075 0.76585 0.91604 0.92262 0.92849 0.90142 0.88088 0.73007 0.91235 0.90030 0.92588 0.92114 0.92147 0.92743 0.92552 0.91753 0.78198 0.93519 0.90148 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.89 37.16 0.37 -1.16 16 2 C -0.05 -0.62 5.92 -27.88 -0.17 -0.78 16 3 C 0.08 1.00 6.41 -82.47 -0.53 0.47 16 4 N -0.49 -5.57 11.26 -10.88 -0.12 -5.69 16 5 C 0.19 1.56 13.21 52.24 0.69 2.25 16 6 O -0.19 -1.95 8.06 4.45 0.04 -1.92 16 7 C -0.10 -1.32 6.96 -36.84 -0.26 -1.58 16 8 C 0.61 9.51 7.83 -12.84 -0.10 9.41 16 9 O -0.51 -9.23 15.13 5.19 0.08 -9.15 16 10 N -0.60 -8.70 2.86 -171.55 -0.49 -9.19 16 11 C 0.10 1.12 5.47 -1.91 -0.01 1.11 16 12 C -0.09 -1.04 3.72 -88.55 -0.33 -1.37 16 13 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 14 C -0.11 -1.30 4.81 -26.93 -0.13 -1.43 16 15 C -0.12 -1.52 5.93 -26.77 -0.16 -1.68 16 16 C -0.14 -2.31 5.37 -26.65 -0.14 -2.45 16 17 C 0.19 3.49 2.44 -69.03 -0.17 3.33 16 18 H 0.05 0.98 8.06 -51.93 -0.42 0.56 16 19 N -0.73 -17.36 5.02 -54.49 -0.27 -17.63 16 20 C -0.24 -6.43 9.91 -15.06 -0.15 -6.58 16 21 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 24 Si 0.90 22.15 29.55 -169.99 -5.02 17.13 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 C -0.10 -1.45 2.39 -90.88 -0.22 -1.67 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 C 0.12 1.96 4.79 -3.34 -0.02 1.95 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.10 1.32 6.47 -51.93 -0.34 0.99 16 36 H 0.25 0.62 8.06 -52.48 -0.42 0.20 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.83 6.06 -51.93 -0.31 0.51 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.81 7.17 -51.93 -0.37 0.44 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 1.02 6.75 -51.93 -0.35 0.67 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.38 9.85 6.76 -40.82 -0.28 9.57 16 46 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.08 1.48 6.50 -51.93 -0.34 1.14 16 48 H 0.08 1.42 8.05 -51.93 -0.42 1.00 16 LS Contribution 376.39 15.07 5.67 5.67 Total: -1.00 -32.40 376.39 -8.25 -40.65 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -7.44 Total: 7.91 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -1.41 Total: -0.64 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: -0.16 Total: -59.65 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.11 Total: -11.07 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.40 -8.25 -40.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992799783.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.283 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds