Wall clock time and date at job start Tue Mar 31 2020 17:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47207 * 2 1 4 4 C 1.38354 * 120.27447 * 269.97838 * 3 2 1 5 5 N 1.31871 * 121.18766 * 180.02562 * 4 3 2 6 6 C 1.32236 * 121.80003 * 359.97438 * 5 4 3 7 7 O 1.35430 * 119.79970 * 180.27692 * 6 5 4 8 8 C 1.40277 * 120.40263 * 0.02562 * 6 5 4 9 9 C 1.47523 * 120.59994 * 179.97438 * 8 6 5 10 10 O 1.21596 * 119.99768 * 0.02562 * 9 8 6 11 11 N 1.34774 * 120.00368 * 180.02562 * 9 8 6 12 12 C 1.46497 * 120.00208 * 179.97438 * 11 9 8 13 13 H 1.08994 * 109.49995 * 34.93892 * 12 11 9 14 14 C 1.53032 * 109.49826 * 274.83542 * 12 11 9 15 15 C 1.53040 * 109.54191 * 301.41695 * 14 12 11 16 16 C 1.53196 * 109.31063 * 298.63525 * 15 14 12 17 17 N 1.46927 * 108.77519 * 54.63077 * 16 15 14 18 18 C 1.36943 * 120.62661 * 126.37438 * 17 16 15 19 19 H 1.07993 * 119.99500 * 209.02562 * 18 17 16 20 20 C 1.38805 * 120.00084 * 29.02297 * 18 17 16 21 21 N 1.31618 * 120.00240 * 15.02634 * 20 18 17 22 22 Si 1.86799 * 120.00037 * 195.02244 * 20 18 17 23 23 H 1.48498 * 109.47105 * 60.00232 * 22 20 18 24 24 H 1.48499 * 109.47343 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47165 * 300.00265 * 22 20 18 26 26 C 1.46923 * 118.74117 * 306.39157 * 17 16 15 27 27 H 1.09002 * 109.70362 * 293.75397 * 26 17 16 28 28 C 1.53002 * 109.58611 * 173.39561 * 26 17 16 29 29 C 1.38341 * 120.26717 * 89.99912 * 3 2 1 30 30 H 1.08996 * 109.46842 * 60.00174 * 1 2 3 31 31 H 1.09005 * 109.46892 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.46840 * 299.99989 * 1 2 3 33 33 H 1.09007 * 109.47158 * 239.99999 * 2 1 3 34 34 H 1.09002 * 109.47202 * 120.00438 * 2 1 3 35 35 H 1.08005 * 119.40211 * 0.04000 * 4 3 2 36 36 H 0.96699 * 114.00355 * 269.72528 * 7 6 5 37 37 H 0.97009 * 119.99759 * 359.97438 * 11 9 8 38 38 H 1.09006 * 109.45910 * 61.43869 * 14 12 11 39 39 H 1.09006 * 109.46186 * 181.39322 * 14 12 11 40 40 H 1.08999 * 109.50276 * 178.68513 * 15 14 12 41 41 H 1.08995 * 109.52550 * 58.59959 * 15 14 12 42 42 H 1.09003 * 109.58300 * 294.84343 * 16 15 14 43 43 H 1.08998 * 109.58468 * 174.42394 * 16 15 14 44 44 H 0.97003 * 120.00471 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.47273 * 300.71357 * 28 26 17 46 46 H 1.08994 * 109.46842 * 60.71452 * 28 26 17 47 47 H 1.08997 * 109.47066 * 180.71135 * 28 26 17 48 48 H 1.07999 * 120.82499 * 359.95379 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2653 2.0783 -1.1949 5 7 2.7054 3.3212 -1.2159 6 6 2.9432 3.9951 -0.1033 7 8 3.3892 5.2720 -0.1721 8 6 2.7313 3.3972 1.1479 9 6 2.9958 4.1448 2.3919 10 8 3.4008 5.2901 2.3385 11 7 2.7886 3.5585 3.5876 12 6 3.0517 4.3007 4.8229 13 1 2.7993 5.3509 4.6771 14 6 4.5327 4.1764 5.1878 15 6 4.8953 2.6996 5.3601 16 6 4.0645 2.1038 6.5010 17 7 2.6418 2.3480 6.2276 18 6 1.7445 1.3135 6.2239 19 1 0.8620 1.3664 5.6036 20 6 1.9692 0.1970 7.0173 21 7 2.8636 0.2442 7.9818 22 14 1.0024 -1.3727 6.7163 23 1 1.2601 -1.8559 5.3360 24 1 1.4259 -2.4097 7.6913 25 1 -0.4479 -1.1004 6.8828 26 6 2.2001 3.7230 5.9577 27 1 2.3241 4.3313 6.8537 28 6 0.7277 3.7165 5.5419 29 6 2.2648 2.0782 1.1948 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.0833 1.5643 -2.1271 36 1 4.3528 5.3517 -0.1896 37 1 2.4651 2.6449 3.6302 38 1 5.1401 4.6091 4.3928 39 1 4.7229 4.7082 6.1201 40 1 5.9555 2.6104 5.5970 41 1 4.6826 2.1621 4.4361 42 1 4.3426 2.5786 7.4420 43 1 4.2458 1.0308 6.5633 44 1 3.0209 -0.5361 8.5361 45 1 0.6050 3.1036 4.6489 46 1 0.1236 3.3052 6.3506 47 1 0.4054 4.7360 5.3300 48 1 2.0901 1.5863 2.1403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994122651.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:43 Heat of formation + Delta-G solvation = -27.323214 kcal Electronic energy + Delta-G solvation = -30347.059050 eV Core-core repulsion = 26402.565065 eV Total energy + Delta-G solvation = -3944.493985 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.93838 -39.38962 -37.67743 -37.16430 -34.38262 -34.00237 -32.90580 -32.19734 -31.45430 -29.45375 -29.10305 -26.37897 -25.12774 -24.77178 -24.13769 -22.60312 -21.65671 -20.86760 -20.25542 -18.98682 -18.68320 -17.35761 -17.17124 -16.43065 -16.07181 -15.39708 -15.04716 -14.88447 -14.68446 -14.26783 -14.08959 -13.98413 -13.54175 -13.49209 -13.42027 -13.13080 -13.07226 -12.91499 -12.60327 -12.20581 -11.92505 -11.87893 -11.53588 -11.33171 -11.28827 -11.19918 -11.02952 -10.77441 -10.68027 -10.58576 -10.18314 -10.08691 -9.97810 -9.96703 -9.71334 -9.38992 -9.32162 -8.91113 -8.60116 -8.48841 -6.75066 -5.88098 -3.33823 0.52159 0.96300 2.96210 3.28174 3.34110 3.36234 3.37278 3.54736 3.79001 4.37788 4.41625 4.52559 4.64786 4.71675 5.03932 5.12928 5.16223 5.24084 5.26107 5.34132 5.49338 5.52461 5.57259 5.62364 5.69350 5.73951 5.77881 5.91056 6.02683 6.05799 6.09219 6.17210 6.25756 6.31432 6.37255 6.48179 6.60986 6.62349 6.72562 6.88507 6.90675 7.04263 7.32171 7.45740 7.60577 7.69887 7.71704 7.93263 8.34695 8.53115 9.10908 9.73900 10.31152 11.19607 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010417 B = 0.004863 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.329174 B = 5755.861030 C = 7643.757695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 C -0.151 4.151 4 C 0.144 3.856 5 N -0.507 5.507 6 C 0.358 3.642 7 O -0.460 6.460 8 C -0.193 4.193 9 C 0.555 3.445 10 O -0.533 6.533 11 N -0.695 5.695 12 C 0.135 3.865 13 H 0.078 0.922 14 C -0.121 4.121 15 C -0.140 4.140 16 C 0.171 3.829 17 N -0.586 5.586 18 C -0.258 4.258 19 H 0.070 0.930 20 C 0.008 3.992 21 N -0.899 5.899 22 Si 0.899 3.101 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.159 3.841 27 H 0.041 0.959 28 C -0.136 4.136 29 C -0.026 4.026 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.162 0.838 36 H 0.402 0.598 37 H 0.406 0.594 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.047 0.953 41 H 0.051 0.949 42 H 0.018 0.982 43 H 0.088 0.912 44 H 0.255 0.745 45 H 0.051 0.949 46 H 0.064 0.936 47 H 0.040 0.960 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.013 0.953 -14.039 14.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.153 4.153 4 C -0.014 4.014 5 N -0.226 5.226 6 C 0.178 3.822 7 O -0.267 6.267 8 C -0.199 4.199 9 C 0.341 3.659 10 O -0.412 6.412 11 N -0.346 5.346 12 C 0.029 3.971 13 H 0.096 0.904 14 C -0.159 4.159 15 C -0.179 4.179 16 C 0.045 3.955 17 N -0.310 5.310 18 C -0.388 4.388 19 H 0.087 0.913 20 C -0.192 4.192 21 N -0.542 5.542 22 Si 0.729 3.271 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.051 3.949 27 H 0.058 0.942 28 C -0.193 4.193 29 C -0.053 4.053 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.179 0.821 36 H 0.262 0.738 37 H 0.243 0.757 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.036 0.964 43 H 0.106 0.894 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.059 0.941 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.106 2.262 -14.653 14.827 hybrid contribution -0.218 -1.774 0.799 1.958 sum -0.324 0.488 -13.855 13.867 Atomic orbital electron populations 1.21781 0.94329 1.02182 1.02390 1.20490 0.96442 0.91144 1.03729 1.20868 1.02222 0.98621 0.93583 1.22585 0.92307 0.88763 0.97763 1.67299 1.15008 1.08771 1.31485 1.19165 0.92293 0.84365 0.86354 1.84718 1.27721 1.18894 1.95350 1.21269 1.07909 0.95615 0.95134 1.17808 0.78731 0.86264 0.83117 1.90770 1.46128 1.17108 1.87172 1.45920 1.65887 1.18036 1.04766 1.21571 0.95836 0.95497 0.84234 0.90408 1.21770 0.95714 0.97870 1.00568 1.22144 0.99102 0.95249 1.01445 1.20821 0.81867 1.00997 0.91796 1.44162 1.03584 1.00599 1.82620 1.19095 1.04571 0.95398 1.19720 0.91273 1.25086 0.98886 0.99760 0.95452 1.70002 1.36257 1.29185 1.18803 0.86436 0.79789 0.83436 0.77456 1.21013 1.21680 1.20901 1.20732 0.92159 0.88574 0.93407 0.94157 1.21783 0.96393 0.99469 1.01678 1.21794 0.91918 0.92239 0.99302 0.92604 0.91969 0.92185 0.90485 0.90117 0.82125 0.73846 0.75667 0.93121 0.91812 0.93441 0.93017 0.96380 0.89402 0.93533 0.92961 0.91729 0.94118 0.83579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.90 37.16 0.37 -0.86 16 2 C -0.08 -0.67 6.08 -27.88 -0.17 -0.84 16 3 C -0.15 -1.59 5.14 -104.54 -0.54 -2.13 16 4 C 0.14 1.53 10.84 -17.49 -0.19 1.35 16 5 N -0.51 -6.84 10.37 -12.98 -0.13 -6.97 16 6 C 0.36 5.23 7.77 -16.61 -0.13 5.10 16 7 O -0.46 -6.69 11.66 -39.75 -0.46 -7.16 16 8 C -0.19 -2.81 5.90 -104.69 -0.62 -3.42 16 9 C 0.56 9.25 7.74 -12.48 -0.10 9.16 16 10 O -0.53 -10.15 14.85 -16.49 -0.24 -10.39 16 11 N -0.69 -11.38 3.42 -54.74 -0.19 -11.57 16 12 C 0.13 2.34 2.33 -67.81 -0.16 2.18 16 13 H 0.08 1.37 7.57 -51.93 -0.39 0.98 16 14 C -0.12 -2.07 5.58 -26.69 -0.15 -2.22 16 15 C -0.14 -2.56 5.93 -26.61 -0.16 -2.71 16 16 C 0.17 3.75 5.29 -3.71 -0.02 3.73 16 17 N -0.59 -12.89 2.65 -164.77 -0.44 -13.33 16 18 C -0.26 -6.19 8.61 -15.06 -0.13 -6.32 16 19 H 0.07 1.60 6.20 -52.49 -0.33 1.27 16 20 C 0.01 0.19 4.96 -17.43 -0.09 0.10 16 21 N -0.90 -24.31 11.14 55.49 0.62 -23.69 16 22 Si 0.90 19.98 29.58 -169.99 -5.03 14.95 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 C 0.16 3.03 3.20 -67.60 -0.22 2.81 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 C -0.14 -2.39 7.72 37.16 0.29 -2.10 16 29 C -0.03 -0.33 9.31 -38.89 -0.36 -0.69 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 34 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 35 H 0.16 1.19 8.06 -52.48 -0.42 0.77 16 36 H 0.40 4.20 9.06 45.56 0.41 4.62 16 37 H 0.41 6.67 5.87 -40.82 -0.24 6.43 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.95 7.53 -51.93 -0.39 0.56 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.09 2.17 6.06 -51.93 -0.31 1.86 16 44 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 45 H 0.05 0.90 6.38 -51.93 -0.33 0.57 16 46 H 0.06 1.22 7.66 -51.93 -0.40 0.82 16 47 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.15 1.76 6.52 -52.49 -0.34 1.42 16 LS Contribution 379.95 15.07 5.73 5.73 Total: -1.00 -29.80 379.95 -9.04 -38.85 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -6.53 Total: 10.47 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -2.36 Total: 3.12 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.14 Total: -55.56 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.71 Total: -17.55 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.80 -9.04 -38.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994122651.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.522 kcal (2) G-P(sol) polarization free energy of solvation -29.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds