Wall clock time and date at job start Tue Mar 31 2020 17:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47207 * 2 1 4 4 C 1.38354 * 120.27447 * 269.97838 * 3 2 1 5 5 N 1.31871 * 121.18766 * 180.02562 * 4 3 2 6 6 C 1.32236 * 121.80003 * 359.97438 * 5 4 3 7 7 O 1.35430 * 119.79970 * 180.27692 * 6 5 4 8 8 C 1.40277 * 120.40263 * 0.02562 * 6 5 4 9 9 C 1.47523 * 120.59994 * 179.97438 * 8 6 5 10 10 O 1.21596 * 119.99768 * 0.02562 * 9 8 6 11 11 N 1.34774 * 120.00368 * 180.02562 * 9 8 6 12 12 C 1.46497 * 120.00208 * 179.97438 * 11 9 8 13 13 H 1.08994 * 109.49995 * 34.93892 * 12 11 9 14 14 C 1.53032 * 109.49826 * 274.83542 * 12 11 9 15 15 C 1.53040 * 109.54191 * 301.41695 * 14 12 11 16 16 C 1.53196 * 109.31063 * 298.63525 * 15 14 12 17 17 N 1.46927 * 108.77519 * 54.63077 * 16 15 14 18 18 C 1.36943 * 120.62661 * 126.37438 * 17 16 15 19 19 H 1.07993 * 119.99500 * 209.02562 * 18 17 16 20 20 C 1.38805 * 120.00084 * 29.02297 * 18 17 16 21 21 N 1.31618 * 120.00240 * 15.02634 * 20 18 17 22 22 Si 1.86799 * 120.00037 * 195.02244 * 20 18 17 23 23 H 1.48498 * 109.47105 * 60.00232 * 22 20 18 24 24 H 1.48499 * 109.47343 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47165 * 300.00265 * 22 20 18 26 26 C 1.46923 * 118.74117 * 306.39157 * 17 16 15 27 27 H 1.09002 * 109.70362 * 293.75397 * 26 17 16 28 28 C 1.53002 * 109.58611 * 173.39561 * 26 17 16 29 29 C 1.38341 * 120.26717 * 89.99912 * 3 2 1 30 30 H 1.08996 * 109.46842 * 60.00174 * 1 2 3 31 31 H 1.09005 * 109.46892 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.46840 * 299.99989 * 1 2 3 33 33 H 1.09007 * 109.47158 * 239.99999 * 2 1 3 34 34 H 1.09002 * 109.47202 * 120.00438 * 2 1 3 35 35 H 1.08005 * 119.40211 * 0.04000 * 4 3 2 36 36 H 0.96699 * 114.00355 * 269.72528 * 7 6 5 37 37 H 0.97009 * 119.99759 * 359.97438 * 11 9 8 38 38 H 1.09006 * 109.45910 * 61.43869 * 14 12 11 39 39 H 1.09006 * 109.46186 * 181.39322 * 14 12 11 40 40 H 1.08999 * 109.50276 * 178.68513 * 15 14 12 41 41 H 1.08995 * 109.52550 * 58.59959 * 15 14 12 42 42 H 1.09003 * 109.58300 * 294.84343 * 16 15 14 43 43 H 1.08998 * 109.58468 * 174.42394 * 16 15 14 44 44 H 0.97003 * 120.00471 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.47273 * 300.71357 * 28 26 17 46 46 H 1.08994 * 109.46842 * 60.71452 * 28 26 17 47 47 H 1.08997 * 109.47066 * 180.71135 * 28 26 17 48 48 H 1.07999 * 120.82499 * 359.95379 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2653 2.0783 -1.1949 5 7 2.7054 3.3212 -1.2159 6 6 2.9432 3.9951 -0.1033 7 8 3.3892 5.2720 -0.1721 8 6 2.7313 3.3972 1.1479 9 6 2.9958 4.1448 2.3919 10 8 3.4008 5.2901 2.3385 11 7 2.7886 3.5585 3.5876 12 6 3.0517 4.3007 4.8229 13 1 2.7993 5.3509 4.6771 14 6 4.5327 4.1764 5.1878 15 6 4.8953 2.6996 5.3601 16 6 4.0645 2.1038 6.5010 17 7 2.6418 2.3480 6.2276 18 6 1.7445 1.3135 6.2239 19 1 0.8620 1.3664 5.6036 20 6 1.9692 0.1970 7.0173 21 7 2.8636 0.2442 7.9818 22 14 1.0024 -1.3727 6.7163 23 1 1.2601 -1.8559 5.3360 24 1 1.4259 -2.4097 7.6913 25 1 -0.4479 -1.1004 6.8828 26 6 2.2001 3.7230 5.9577 27 1 2.3241 4.3313 6.8537 28 6 0.7277 3.7165 5.5419 29 6 2.2648 2.0782 1.1948 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.0833 1.5643 -2.1271 36 1 4.3528 5.3517 -0.1896 37 1 2.4651 2.6449 3.6302 38 1 5.1401 4.6091 4.3928 39 1 4.7229 4.7082 6.1201 40 1 5.9555 2.6104 5.5970 41 1 4.6826 2.1621 4.4361 42 1 4.3426 2.5786 7.4420 43 1 4.2458 1.0308 6.5633 44 1 3.0209 -0.5361 8.5361 45 1 0.6050 3.1036 4.6489 46 1 0.1236 3.3052 6.3506 47 1 0.4054 4.7360 5.3300 48 1 2.0901 1.5863 2.1403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994122651.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:42 Heat of formation + Delta-G solvation = -46.302423 kcal Electronic energy + Delta-G solvation = -30347.882050 eV Core-core repulsion = 26402.565065 eV Total energy + Delta-G solvation = -3945.316985 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.00091 -40.71374 -39.04035 -38.28325 -35.60492 -35.19284 -34.27179 -33.64462 -32.93257 -30.95298 -30.03524 -27.92540 -26.85284 -25.85260 -24.99173 -23.94842 -22.91123 -22.38431 -21.48977 -20.34658 -19.86308 -18.52326 -18.37498 -18.00552 -17.09380 -17.06131 -16.34081 -16.20038 -15.83207 -15.67181 -15.53774 -14.99989 -14.81432 -14.74233 -14.66838 -14.35736 -14.24900 -14.12422 -13.95944 -13.54962 -13.02367 -12.96330 -12.85921 -12.78419 -12.69180 -12.43983 -12.35073 -12.33688 -12.17899 -11.93473 -11.83880 -11.67639 -11.37202 -11.14019 -11.04087 -10.97356 -10.47279 -10.42579 -9.99659 -9.75241 -8.59995 -7.79310 -5.26226 -0.47280 0.01569 1.52790 1.53608 1.59602 1.83449 2.15723 2.50535 2.55794 2.76187 3.36902 3.49051 3.59290 3.65524 3.70758 3.84515 3.98903 4.06686 4.16422 4.21210 4.30167 4.39434 4.50051 4.52636 4.55794 4.65650 4.71170 4.78108 4.83357 4.92668 4.94014 4.99534 5.04634 5.12462 5.16206 5.22191 5.33928 5.34506 5.37038 5.43369 5.48663 5.55941 5.62616 5.75544 5.81930 6.45662 6.50562 6.61648 6.79574 7.20478 7.23414 7.91118 8.44738 9.27004 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010417 B = 0.004863 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.329174 B = 5755.861030 C = 7643.757695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.078 4.078 3 C -0.141 4.141 4 C 0.152 3.848 5 N -0.522 5.522 6 C 0.346 3.654 7 O -0.477 6.477 8 C -0.210 4.210 9 C 0.558 3.442 10 O -0.561 6.561 11 N -0.691 5.691 12 C 0.144 3.856 13 H 0.079 0.921 14 C -0.115 4.115 15 C -0.126 4.126 16 C 0.179 3.821 17 N -0.595 5.595 18 C -0.248 4.248 19 H 0.080 0.920 20 C -0.047 4.047 21 N -0.935 5.935 22 Si 0.957 3.043 23 H -0.270 1.270 24 H -0.305 1.305 25 H -0.280 1.280 26 C 0.156 3.844 27 H 0.032 0.968 28 C -0.128 4.128 29 C -0.029 4.029 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.200 0.800 36 H 0.415 0.585 37 H 0.407 0.593 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.051 0.949 42 H -0.006 1.006 43 H 0.058 0.942 44 H 0.246 0.754 45 H 0.055 0.945 46 H 0.049 0.951 47 H 0.061 0.939 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.816 0.177 -16.543 16.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 C -0.143 4.143 4 C -0.006 4.006 5 N -0.241 5.241 6 C 0.167 3.833 7 O -0.286 6.286 8 C -0.217 4.217 9 C 0.345 3.655 10 O -0.441 6.441 11 N -0.342 5.342 12 C 0.037 3.963 13 H 0.097 0.903 14 C -0.153 4.153 15 C -0.165 4.165 16 C 0.053 3.947 17 N -0.319 5.319 18 C -0.378 4.378 19 H 0.098 0.902 20 C -0.242 4.242 21 N -0.582 5.582 22 Si 0.786 3.214 23 H -0.196 1.196 24 H -0.232 1.232 25 H -0.206 1.206 26 C 0.050 3.950 27 H 0.050 0.950 28 C -0.185 4.185 29 C -0.055 4.055 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.122 0.878 34 H 0.095 0.905 35 H 0.216 0.784 36 H 0.276 0.724 37 H 0.244 0.756 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.012 0.988 43 H 0.077 0.923 44 H 0.055 0.945 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.080 0.920 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.915 1.501 -17.185 17.274 hybrid contribution 0.007 -1.515 1.525 2.149 sum -0.908 -0.013 -15.660 15.686 Atomic orbital electron populations 1.21789 0.94115 1.02813 1.01997 1.20563 0.96457 0.89600 1.04920 1.21125 1.00891 0.99550 0.92755 1.23254 0.90196 0.87822 0.99320 1.67379 1.15798 1.09969 1.30949 1.19278 0.92837 0.84475 0.86739 1.84665 1.29069 1.19435 1.95414 1.21084 1.10102 0.96473 0.94056 1.18081 0.77849 0.85974 0.83598 1.90749 1.47456 1.18335 1.87580 1.45833 1.65969 1.17879 1.04512 1.21359 0.95490 0.95432 0.83987 0.90258 1.21715 0.95674 0.96968 1.00961 1.21951 0.99179 0.95674 0.99660 1.20598 0.82707 0.99135 0.92242 1.44326 1.03492 1.01612 1.82453 1.19438 1.04471 0.95472 1.18452 0.90211 1.25755 1.00221 1.02540 0.95720 1.70170 1.38429 1.29324 1.20243 0.85506 0.78510 0.80002 0.77415 1.19562 1.23211 1.20589 1.20838 0.93543 0.86863 0.93792 0.95003 1.21701 0.94938 1.00797 1.01095 1.21886 0.91805 0.91524 1.00304 0.91835 0.90872 0.93780 0.87810 0.90489 0.78373 0.72398 0.75591 0.92559 0.91398 0.92017 0.92975 0.98803 0.92330 0.94503 0.92601 0.93233 0.92019 0.83505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.90 71.98 0.71 -1.29 16 2 C -0.08 -1.02 6.08 29.85 0.18 -0.84 16 3 C -0.14 -2.57 5.14 -19.81 -0.10 -2.68 16 4 C 0.15 2.75 10.84 84.71 0.92 3.66 16 5 N -0.52 -13.01 10.37 -308.00 -3.19 -16.21 16 6 C 0.35 9.75 7.77 85.13 0.66 10.41 16 7 O -0.48 -13.69 11.66 -66.44 -0.77 -14.47 16 8 C -0.21 -5.92 5.90 -19.91 -0.12 -6.03 16 9 C 0.56 18.16 7.74 86.69 0.67 18.83 16 10 O -0.56 -21.05 14.85 16.80 0.25 -20.80 16 11 N -0.69 -21.97 3.42 -445.36 -1.52 -23.50 16 12 C 0.14 4.86 2.33 45.07 0.10 4.96 16 13 H 0.08 2.71 7.57 -2.39 -0.02 2.70 16 14 C -0.11 -3.83 5.58 30.62 0.17 -3.66 16 15 C -0.13 -4.51 5.93 30.67 0.18 -4.33 16 16 C 0.18 7.99 5.29 86.36 0.46 8.44 16 17 N -0.59 -26.23 2.65 -675.21 -1.79 -28.02 16 18 C -0.25 -11.84 8.61 84.03 0.72 -11.11 16 19 H 0.08 3.59 6.20 -2.91 -0.02 3.57 16 20 C -0.05 -2.39 4.96 84.86 0.42 -1.97 16 21 N -0.94 -51.95 11.14 21.65 0.24 -51.70 16 22 Si 0.96 41.07 29.58 68.60 2.03 43.10 16 23 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 24 H -0.31 -13.73 7.11 99.48 0.71 -13.03 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 26 C 0.16 5.88 3.20 44.98 0.14 6.03 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 28 C -0.13 -4.36 7.72 71.98 0.56 -3.80 16 29 C -0.03 -0.68 9.31 22.72 0.21 -0.47 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 0.86 8.09 -2.38 -0.02 0.84 16 34 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 35 H 0.20 2.00 8.06 -2.91 -0.02 1.97 16 36 H 0.41 8.63 9.06 -74.06 -0.67 7.96 16 37 H 0.41 12.92 5.87 -92.70 -0.54 12.38 16 38 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 40 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.05 1.87 7.53 -2.39 -0.02 1.85 16 42 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 43 H 0.06 2.98 6.06 -2.39 -0.01 2.96 16 44 H 0.25 13.52 8.31 -92.71 -0.77 12.75 16 45 H 0.05 1.85 6.38 -2.39 -0.02 1.83 16 46 H 0.05 1.83 7.66 -2.39 -0.02 1.81 16 47 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.15 3.33 6.52 -2.91 -0.02 3.31 16 Total: -1.00 -64.50 379.95 0.91 -63.59 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: -0.22 Total: 31.84 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 5.89 Total: 16.17 kcal Atomic # 7 Polarization: -113.17 SS G_CDS: -6.26 Total: -119.43 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.52 Total: -35.27 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -64.50 0.91 -63.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994122651.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.287 kcal (2) G-P(sol) polarization free energy of solvation -64.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds