Wall clock time and date at job start Tue Mar 31 2020 17:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.46998 * 2 1 4 4 C 1.35321 * 126.66690 * 90.28769 * 3 2 1 5 5 C 1.42272 * 103.92198 * 180.12916 * 4 3 2 6 6 C 1.48323 * 126.93850 * 179.90707 * 5 4 3 7 7 O 1.21498 * 119.99948 * 359.71260 * 6 5 4 8 8 N 1.34778 * 120.00432 * 179.71185 * 6 5 4 9 9 C 1.46501 * 120.00547 * 180.02562 * 8 6 5 10 10 C 1.52998 * 115.54857 * 179.97438 * 9 8 6 11 11 C 1.53035 * 109.44827 * 274.37896 * 10 9 8 12 12 C 1.53191 * 109.31236 * 181.38391 * 11 10 9 13 13 N 1.46929 * 108.77545 * 305.36669 * 12 11 10 14 14 C 1.36943 * 120.63294 * 233.58836 * 13 12 11 15 15 H 1.08000 * 119.99404 * 27.69321 * 14 13 12 16 16 C 1.38804 * 119.99837 * 207.69657 * 14 13 12 17 17 N 1.31618 * 120.00488 * 17.35070 * 16 14 13 18 18 Si 1.86806 * 119.99788 * 197.35548 * 16 14 13 19 19 H 1.48501 * 109.47162 * 89.99802 * 18 16 14 20 20 H 1.48496 * 109.47079 * 209.99949 * 18 16 14 21 21 H 1.48495 * 109.47122 * 330.00094 * 18 16 14 22 22 C 1.46924 * 118.73625 * 53.60723 * 13 12 11 23 23 C 1.53035 * 109.46210 * 34.44803 * 10 9 8 24 24 C 1.53004 * 117.49486 * 325.66943 * 9 8 6 25 25 C 1.53005 * 117.49578 * 34.32747 * 9 8 6 26 26 N 1.30987 * 106.12112 * 359.64593 * 5 4 3 27 27 O 1.20901 * 111.44296 * 0.22647 * 26 5 4 28 28 H 1.09003 * 109.46996 * 60.00103 * 1 2 3 29 29 H 1.09006 * 109.46490 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47213 * 299.99510 * 1 2 3 31 31 H 1.09002 * 109.47404 * 239.99811 * 2 1 3 32 32 H 1.09000 * 109.47484 * 119.99957 * 2 1 3 33 33 H 1.07996 * 128.03483 * 0.02562 * 4 3 2 34 34 H 0.97007 * 119.99624 * 359.97438 * 8 6 5 35 35 H 1.09002 * 109.45665 * 154.41863 * 10 9 8 36 36 H 1.09003 * 109.50176 * 301.33296 * 11 10 9 37 37 H 1.08996 * 109.49935 * 61.43485 * 11 10 9 38 38 H 1.09005 * 109.58899 * 185.58064 * 12 11 10 39 39 H 1.08997 * 109.59179 * 65.15342 * 12 11 10 40 40 H 0.97003 * 120.00197 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.58430 * 186.60579 * 22 13 12 42 42 H 1.08999 * 109.58822 * 66.18240 * 22 13 12 43 43 H 1.09005 * 109.49484 * 298.57584 * 23 10 9 44 44 H 1.08993 * 109.50166 * 58.63737 * 23 10 9 45 45 H 1.09000 * 117.49624 * 214.99992 * 24 9 8 46 46 H 1.09003 * 117.49837 * 0.02562 * 24 9 8 47 47 H 1.09005 * 117.49844 * 359.97438 * 25 9 8 48 48 H 1.09000 * 117.49711 * 144.97626 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3068 2.1809 1.0854 5 6 2.7386 3.4199 0.5354 6 6 3.1658 4.6269 1.2841 7 8 3.1642 4.6203 2.4991 8 7 3.5559 5.7310 0.6168 9 6 3.9785 6.9230 1.3562 10 6 4.4008 8.1169 0.4977 11 6 5.8770 7.9759 0.1198 12 6 6.3056 9.1898 -0.7106 13 7 5.3986 9.3212 -1.8590 14 6 5.8931 9.3936 -3.1340 15 1 6.8381 8.9290 -3.3737 16 6 5.1797 10.0641 -4.1180 17 7 4.2269 10.9073 -3.7811 18 14 5.5719 9.7696 -5.9205 19 1 4.7417 8.6492 -6.4311 20 1 5.2765 10.9993 -6.6987 21 1 7.0094 9.4261 -6.0645 22 6 3.9510 9.3739 -1.6134 23 6 3.5488 8.1580 -0.7729 24 6 3.2727 7.2195 2.6810 25 6 4.7158 6.7088 2.6797 26 7 2.6880 3.2775 -0.7657 27 8 2.2986 2.1755 -1.0750 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.2171 1.9104 2.1271 34 1 3.5576 5.7361 -0.3533 35 1 4.2567 9.0386 1.0615 36 1 6.4811 7.9232 1.0256 37 1 6.0177 7.0670 -0.4652 38 1 7.3264 9.0478 -1.0656 39 1 6.2516 10.0894 -0.0976 40 1 3.7286 11.3761 -4.4688 41 1 3.4181 9.3534 -2.5641 42 1 3.7049 10.2886 -1.0739 43 1 3.7113 7.2473 -1.3495 44 1 2.4957 8.2342 -0.5025 45 1 3.1090 8.2653 2.9410 46 1 2.4944 6.5274 3.0025 47 1 4.8861 5.6809 3.0003 48 1 5.5017 7.4184 2.9385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000313915.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:12 Heat of formation + Delta-G solvation = 52.174665 kcal Electronic energy + Delta-G solvation = -29137.619554 eV Core-core repulsion = 25196.572856 eV Total energy + Delta-G solvation = -3941.046698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.21838 -41.69463 -39.50014 -37.54621 -35.86582 -35.23628 -34.61798 -33.79767 -32.22621 -31.38858 -31.13625 -27.50457 -26.33598 -25.01561 -24.44452 -24.07040 -23.58792 -23.00843 -21.62878 -21.15213 -20.30219 -19.00886 -18.83731 -18.56655 -18.12256 -16.92169 -16.73619 -16.14118 -16.02619 -15.66406 -15.44025 -15.36133 -15.08860 -15.05328 -14.81474 -14.63577 -14.40140 -14.33915 -13.96305 -13.51420 -13.19067 -12.99300 -12.90577 -12.68490 -12.58651 -12.42077 -12.40869 -12.28008 -12.04639 -11.93778 -11.86085 -11.83375 -11.57428 -11.52673 -11.31269 -11.17475 -10.89579 -10.54384 -10.50618 -9.72049 -8.69171 -7.88378 -5.32895 -0.03016 0.60937 1.45105 1.47019 1.55259 1.68351 1.90470 2.00372 2.50184 2.78075 2.90269 3.25282 3.36589 3.52635 3.68016 3.75500 3.87221 3.95781 4.03011 4.11834 4.19440 4.28562 4.34329 4.42691 4.44251 4.47622 4.61469 4.70550 4.71169 4.78037 4.88699 4.95707 4.95837 4.99162 5.05823 5.12407 5.13769 5.19125 5.21443 5.31063 5.33615 5.39323 5.42351 5.52471 5.63840 5.73737 6.19859 6.38493 6.79804 6.99404 7.14399 7.86154 8.37185 9.17840 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011707 B = 0.003138 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.089558 B = 8920.974682 C =10730.409601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.040 4.040 3 C -0.016 4.016 4 C -0.189 4.189 5 C -0.049 4.049 6 C 0.595 3.405 7 O -0.538 6.538 8 N -0.673 5.673 9 C 0.097 3.903 10 C -0.031 4.031 11 C -0.112 4.112 12 C 0.140 3.860 13 N -0.610 5.610 14 C -0.261 4.261 15 H 0.065 0.935 16 C -0.050 4.050 17 N -0.934 5.934 18 Si 0.964 3.036 19 H -0.287 1.287 20 H -0.294 1.294 21 H -0.269 1.269 22 C 0.179 3.821 23 C -0.120 4.120 24 C -0.171 4.171 25 C -0.164 4.164 26 N -0.355 5.355 27 O 0.124 5.876 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.107 0.893 32 H 0.123 0.877 33 H 0.197 0.803 34 H 0.411 0.589 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.019 0.981 40 H 0.250 0.750 41 H 0.053 0.947 42 H 0.000 1.000 43 H 0.046 0.954 44 H 0.063 0.937 45 H 0.111 0.889 46 H 0.094 0.906 47 H 0.095 0.905 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.048 -21.993 12.362 25.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.078 4.078 3 C -0.079 4.079 4 C -0.212 4.212 5 C -0.206 4.206 6 C 0.380 3.620 7 O -0.415 6.415 8 N -0.323 5.323 9 C 0.010 3.990 10 C -0.050 4.050 11 C -0.151 4.151 12 C 0.015 3.985 13 N -0.334 5.334 14 C -0.391 4.391 15 H 0.082 0.918 16 C -0.246 4.246 17 N -0.580 5.580 18 Si 0.792 3.208 19 H -0.213 1.213 20 H -0.221 1.221 21 H -0.194 1.194 22 C 0.053 3.947 23 C -0.159 4.159 24 C -0.209 4.209 25 C -0.202 4.202 26 N -0.055 5.055 27 O 0.047 5.953 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.126 0.874 32 H 0.142 0.858 33 H 0.214 0.786 34 H 0.248 0.752 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.037 0.963 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.018 0.982 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.129 0.871 46 H 0.112 0.888 47 H 0.113 0.887 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.797 -20.997 12.113 24.924 hybrid contribution -0.072 0.185 -0.963 0.984 sum -5.868 -20.812 11.149 24.329 Atomic orbital electron populations 1.21828 0.92898 1.04000 1.02276 1.20446 0.96897 0.83417 1.07022 1.25305 1.00198 0.98243 0.84137 1.22653 1.05314 0.90542 1.02702 1.23583 1.07975 0.98538 0.90528 1.17084 0.77222 0.81313 0.86349 1.90724 1.54944 1.82975 1.12835 1.45354 1.64490 1.11615 1.10858 1.20911 1.04873 0.86513 0.86713 1.20634 0.95404 0.94480 0.94481 1.21914 0.95171 0.98364 0.99638 1.21072 0.93553 0.95277 0.88591 1.44318 1.01552 1.85472 1.02018 1.19499 1.06090 1.26977 0.86570 0.91770 1.25751 0.99998 0.96502 1.02304 1.70177 1.26827 1.28266 1.32732 0.85316 0.78221 0.76653 0.80585 1.21349 1.22100 1.19368 1.20552 0.84333 0.92598 0.97214 1.21985 0.98671 0.99206 0.96072 1.23475 0.96549 1.02480 0.98382 1.23386 0.95594 1.03153 0.98091 1.74253 1.14850 1.00469 1.15929 1.84764 1.59273 1.16857 1.34425 0.92996 0.89027 0.92481 0.87419 0.85843 0.78610 0.75155 0.89405 0.89821 0.93413 0.92860 0.96261 0.94133 0.92887 0.98151 0.93495 0.91872 0.87092 0.88778 0.88687 0.86779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 71.98 0.71 -0.25 16 2 C -0.04 -0.26 6.50 29.85 0.19 -0.06 16 3 C -0.02 -0.25 6.73 25.01 0.17 -0.08 16 4 C -0.19 -3.69 10.92 22.60 0.25 -3.45 16 5 C -0.05 -1.30 7.19 42.96 0.31 -0.99 16 6 C 0.60 17.77 7.55 86.93 0.66 18.43 16 7 O -0.54 -17.13 12.43 -3.71 -0.05 -17.17 16 8 N -0.67 -20.20 5.38 -425.29 -2.29 -22.49 16 9 C 0.10 2.78 2.48 3.61 0.01 2.79 16 10 C -0.03 -0.98 2.28 -10.77 -0.02 -1.01 16 11 C -0.11 -3.69 5.22 30.67 0.16 -3.53 16 12 C 0.14 5.75 6.52 86.36 0.56 6.31 16 13 N -0.61 -30.70 3.00 -699.09 -2.09 -32.79 16 14 C -0.26 -14.52 9.59 84.03 0.81 -13.72 16 15 H 0.06 3.50 7.89 -2.91 -0.02 3.48 16 16 C -0.05 -2.83 4.91 84.86 0.42 -2.42 16 17 N -0.93 -55.73 11.19 21.65 0.24 -55.49 16 18 Si 0.96 45.52 29.59 68.60 2.03 47.55 16 19 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 20 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 22 C 0.18 8.64 5.31 86.36 0.46 9.10 16 23 C -0.12 -4.51 4.83 30.67 0.15 -4.36 16 24 C -0.17 -4.56 9.37 30.62 0.29 -4.27 16 25 C -0.16 -4.30 8.91 30.62 0.27 -4.03 16 26 N -0.36 -9.76 11.84 -49.51 -0.59 -10.35 16 27 O 0.12 2.75 11.18 71.86 0.80 3.55 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.09 0.23 8.14 -2.38 -0.02 0.21 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.20 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.41 12.84 6.42 -92.70 -0.60 12.24 16 35 H 0.09 2.73 7.90 -2.39 -0.02 2.71 16 36 H 0.08 2.29 7.24 -2.39 -0.02 2.27 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.05 2.16 7.93 -2.38 -0.02 2.14 16 39 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 41 H 0.05 2.93 6.04 -2.38 -0.01 2.92 16 42 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 43 H 0.05 1.81 6.50 -2.38 -0.02 1.79 16 44 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.11 2.60 8.05 -2.39 -0.02 2.58 16 46 H 0.09 2.77 6.37 -2.39 -0.02 2.75 16 47 H 0.09 2.74 6.37 -2.38 -0.02 2.72 16 48 H 0.11 2.57 7.60 -2.39 -0.02 2.55 16 Total: -1.00 -68.74 382.07 3.82 -64.92 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.38 Total: 23.80 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 5.38 Total: -1.53 kcal Atomic # 7 Polarization: -116.39 SS G_CDS: -4.73 Total: -121.12 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.76 Total: -13.62 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -68.74 3.82 -64.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000313915.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.097 kcal (2) G-P(sol) polarization free energy of solvation -68.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds