Wall clock time and date at job start Tue Mar 31 2020 18:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46869 * 2 1 4 4 C 1.50703 * 109.47158 * 179.97438 * 3 2 1 5 5 C 1.38025 * 119.51052 * 125.26182 * 4 3 2 6 6 C 1.39927 * 119.13079 * 180.25521 * 5 4 3 7 7 C 1.48155 * 120.89224 * 179.77333 * 6 5 4 8 8 O 1.21520 * 119.99789 * 140.03780 * 7 6 5 9 9 N 1.34781 * 120.00067 * 320.03868 * 7 6 5 10 10 C 1.46927 * 120.62795 * 174.18205 * 9 7 6 11 11 C 1.53191 * 108.77355 * 126.41680 * 10 9 7 12 12 C 1.53040 * 109.31636 * 54.63067 * 11 10 9 13 13 C 1.53043 * 109.53543 * 298.63871 * 12 11 10 14 14 H 1.09003 * 109.49895 * 301.37767 * 13 12 11 15 15 N 1.46503 * 109.49370 * 181.31468 * 13 12 11 16 16 C 1.36938 * 119.99797 * 154.99729 * 15 13 12 17 17 H 1.07997 * 120.00051 * 359.97438 * 16 15 13 18 18 C 1.38808 * 120.00287 * 179.97438 * 16 15 13 19 19 N 1.31614 * 120.00605 * 179.72534 * 18 16 15 20 20 Si 1.86803 * 119.99720 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47501 * 89.99490 * 20 18 16 22 22 H 1.48500 * 109.46992 * 210.00045 * 20 18 16 23 23 H 1.48501 * 109.47122 * 329.99559 * 20 18 16 24 24 C 1.46924 * 120.62912 * 354.20668 * 9 7 6 25 25 C 1.39623 * 118.21476 * 359.49870 * 6 5 4 26 26 C 1.38846 * 118.94936 * 0.25188 * 25 6 5 27 27 O 1.35676 * 119.62197 * 179.97438 * 26 25 6 28 28 N 1.31879 * 119.51227 * 305.00770 * 4 3 2 29 29 H 1.08998 * 109.47464 * 60.00144 * 1 2 3 30 30 H 1.09002 * 109.47207 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47458 * 299.99646 * 1 2 3 32 32 H 1.08998 * 109.47458 * 240.00354 * 2 1 3 33 33 H 1.08998 * 109.47464 * 119.99856 * 2 1 3 34 34 H 1.09009 * 109.47097 * 60.00343 * 3 2 1 35 35 H 1.08992 * 109.47589 * 300.00361 * 3 2 1 36 36 H 1.07992 * 120.43484 * 0.02562 * 5 4 3 37 37 H 1.08996 * 109.59159 * 6.62452 * 10 9 7 38 38 H 1.09004 * 109.58370 * 246.20037 * 10 9 7 39 39 H 1.09005 * 109.49151 * 294.67777 * 11 10 9 40 40 H 1.09000 * 109.52343 * 174.60065 * 11 10 9 41 41 H 1.08998 * 109.45936 * 178.61629 * 12 11 10 42 42 H 1.09002 * 109.44771 * 58.64541 * 12 11 10 43 43 H 0.97003 * 120.00241 * 335.00125 * 15 13 12 44 44 H 0.96996 * 120.00522 * 180.02562 * 19 18 16 45 45 H 1.08995 * 109.58514 * 113.79906 * 24 9 7 46 46 H 1.09000 * 109.58549 * 353.36694 * 24 9 7 47 47 H 1.07998 * 120.52158 * 180.23234 * 25 6 5 48 48 H 0.96708 * 113.99891 * 90.00541 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.2272 2.1360 -0.9800 6 6 5.6264 2.1262 -0.9750 7 6 6.3959 2.8529 -2.0117 8 8 7.4032 3.4603 -1.7066 9 7 5.9787 2.8403 -3.2933 10 6 6.6561 3.6576 -4.3091 11 6 7.0647 2.7539 -5.4767 12 6 5.8339 2.0042 -5.9915 13 6 5.2667 1.1242 -4.8751 14 1 6.0307 0.4219 -4.5417 15 7 4.1073 0.3832 -5.3781 16 6 3.7452 -0.8008 -4.7931 17 1 4.3145 -1.1885 -3.9613 18 6 2.6464 -1.5027 -5.2693 19 7 2.3015 -2.6434 -4.7106 20 14 1.6621 -0.8325 -6.7085 21 1 2.2301 -1.3486 -7.9799 22 1 0.2474 -1.2672 -6.5859 23 1 1.7262 0.6511 -6.7040 24 6 4.8375 2.0094 -3.7008 25 6 6.2780 1.4181 0.0367 26 6 5.5171 0.7519 0.9880 27 8 6.1361 0.0592 1.9768 28 7 4.1962 0.7844 0.9410 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8901 35 1 1.6766 1.9564 -0.8899 36 1 3.6867 2.6758 -1.7433 37 1 7.5436 4.1181 -3.8753 38 1 5.9777 4.4322 -4.6667 39 1 7.8121 2.0367 -5.1372 40 1 7.4823 3.3620 -6.2791 41 1 6.1173 1.3790 -6.8381 42 1 5.0773 2.7224 -6.3075 43 1 3.5962 0.7312 -6.1255 44 1 1.5339 -3.1341 -5.0435 45 1 4.0109 2.6497 -4.0088 46 1 4.5253 1.3824 -2.8657 47 1 7.3568 1.3889 0.0784 48 1 6.3156 0.5820 2.7704 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000404349.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:27 Heat of formation + Delta-G solvation = -30.395412 kcal Electronic energy + Delta-G solvation = -29837.741261 eV Core-core repulsion = 25893.114056 eV Total energy + Delta-G solvation = -3944.627205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.01136 -39.68299 -37.54899 -37.35638 -34.76713 -34.53474 -33.19442 -32.06175 -31.39557 -30.57580 -28.82969 -26.91548 -25.94609 -24.07962 -23.71268 -22.90690 -21.72592 -21.15535 -20.47159 -19.35868 -18.37063 -17.66602 -17.29071 -16.52613 -16.23390 -15.78404 -15.31488 -15.17936 -14.68992 -14.66345 -14.37177 -14.18564 -14.08115 -13.69426 -13.56936 -13.15776 -12.86620 -12.70514 -12.63631 -12.56146 -12.31842 -12.00587 -11.76233 -11.66109 -11.32265 -11.30827 -11.01315 -10.96680 -10.82123 -10.65939 -10.47103 -10.40047 -10.29201 -10.08237 -9.73224 -9.68406 -9.34497 -9.19504 -8.76633 -8.55961 -7.40466 -5.86293 -3.24781 0.76727 0.95309 2.64170 2.96785 3.28279 3.31842 3.38326 3.45654 3.69992 4.27582 4.47762 4.49061 4.85995 4.88689 4.95874 5.02450 5.05869 5.11856 5.25755 5.27243 5.31197 5.37955 5.39767 5.49997 5.59377 5.62403 5.71691 5.72845 5.79999 5.86286 5.87547 5.91246 5.95644 6.01574 6.03731 6.10510 6.16654 6.25867 6.41579 6.47248 6.49238 6.56441 6.62231 6.71416 7.37655 7.41135 7.87233 7.88579 8.07924 8.31506 9.08315 9.80240 9.98603 11.31081 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007642 B = 0.005694 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3663.195313 B = 4916.506186 C = 7562.922607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.067 4.067 4 C 0.160 3.840 5 C -0.144 4.144 6 C -0.062 4.062 7 C 0.562 3.438 8 O -0.541 6.541 9 N -0.596 5.596 10 C 0.112 3.888 11 C -0.129 4.129 12 C -0.130 4.130 13 C 0.172 3.828 14 H 0.060 0.940 15 N -0.741 5.741 16 C -0.253 4.253 17 H 0.090 0.910 18 C 0.013 3.987 19 N -0.926 5.926 20 Si 0.882 3.118 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.277 1.277 24 C 0.074 3.926 25 C -0.143 4.143 26 C 0.312 3.688 27 O -0.477 6.477 28 N -0.484 5.484 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.147 0.853 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.363 0.637 44 H 0.261 0.739 45 H 0.067 0.933 46 H 0.096 0.904 47 H 0.146 0.854 48 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.524 13.210 7.196 15.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.105 4.105 4 C 0.023 3.977 5 C -0.164 4.164 6 C -0.072 4.072 7 C 0.350 3.650 8 O -0.420 6.420 9 N -0.328 5.328 10 C -0.010 4.010 11 C -0.168 4.168 12 C -0.169 4.169 13 C 0.061 3.939 14 H 0.078 0.922 15 N -0.383 5.383 16 C -0.382 4.382 17 H 0.107 0.893 18 C -0.184 4.184 19 N -0.573 5.573 20 Si 0.712 3.288 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.051 4.051 25 C -0.165 4.165 26 C 0.133 3.867 27 O -0.284 6.284 28 N -0.204 5.204 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.165 0.835 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.196 0.804 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.114 0.886 47 H 0.164 0.836 48 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 3.588 12.363 7.730 15.015 hybrid contribution -0.327 0.968 -1.345 1.689 sum 3.261 13.331 6.385 15.137 Atomic orbital electron populations 1.21738 0.95716 1.01911 1.01232 1.21460 0.95595 0.94994 1.03734 1.20640 0.87384 0.99335 1.03150 1.20962 0.96806 0.91053 0.88923 1.22280 0.93221 1.01160 0.99762 1.20113 0.93815 0.97804 0.95508 1.18202 0.84004 0.80485 0.82330 1.90748 1.24923 1.44991 1.81299 1.48133 1.33166 1.44444 1.07081 1.21644 0.98041 0.92971 0.88358 1.21870 0.98483 0.99087 0.97353 1.21878 0.96926 0.98875 0.99173 1.20454 0.90361 0.91806 0.91242 0.92157 1.42728 1.32411 1.24285 1.38898 1.19029 1.10213 0.95631 1.13360 0.89253 1.24656 0.98315 0.96624 0.98819 1.69697 1.28975 1.15349 1.43242 0.86612 0.80187 0.78375 0.83658 1.21039 1.21652 1.20301 1.23245 0.87019 0.93481 1.01352 1.22059 1.02016 0.97115 0.95306 1.18897 0.86735 0.90788 0.90276 1.84831 1.77059 1.39178 1.27328 1.66760 1.09781 1.17710 1.26154 0.92657 0.92504 0.93237 0.90698 0.91132 0.90048 0.89845 0.83523 0.89108 0.91352 0.91356 0.90764 0.91184 0.92056 0.80366 0.92914 0.91436 0.88600 0.83582 0.74454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.12 -1.71 5.79 -26.73 -0.15 -1.86 16 3 C -0.07 -0.84 5.61 -27.88 -0.16 -1.00 16 4 C 0.16 2.32 6.18 -82.65 -0.51 1.81 16 5 C -0.14 -2.04 7.09 -39.03 -0.28 -2.32 16 6 C -0.06 -0.93 5.15 -104.68 -0.54 -1.47 16 7 C 0.56 8.88 7.38 -12.19 -0.09 8.79 16 8 O -0.54 -9.60 16.37 5.35 0.09 -9.51 16 9 N -0.60 -8.61 2.97 -173.77 -0.52 -9.13 16 10 C 0.11 1.37 6.44 -3.71 -0.02 1.34 16 11 C -0.13 -1.52 6.08 -26.61 -0.16 -1.68 16 12 C -0.13 -1.82 5.35 -26.69 -0.14 -1.96 16 13 C 0.17 3.03 2.92 -67.81 -0.20 2.83 16 14 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 15 N -0.74 -15.97 4.93 -53.31 -0.26 -16.24 16 16 C -0.25 -6.66 10.41 -15.06 -0.16 -6.81 16 17 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 18 C 0.01 0.35 5.50 -17.43 -0.10 0.25 16 19 N -0.93 -27.81 13.97 55.49 0.78 -27.03 16 20 Si 0.88 20.84 27.74 -169.99 -4.71 16.12 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.05 6.52 56.52 0.37 -5.68 16 24 C 0.07 1.16 4.52 -3.71 -0.02 1.14 16 25 C -0.14 -2.08 9.70 -38.84 -0.38 -2.46 16 26 C 0.31 4.56 7.74 -17.16 -0.13 4.43 16 27 O -0.48 -5.95 13.56 -18.73 -0.25 -6.21 16 28 N -0.48 -7.48 9.87 -9.60 -0.09 -7.57 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.04 7.94 -51.93 -0.41 0.63 16 34 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 35 H 0.08 0.94 7.86 -51.93 -0.41 0.53 16 36 H 0.15 1.86 6.53 -52.49 -0.34 1.52 16 37 H 0.09 1.14 7.00 -51.93 -0.36 0.77 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.36 7.67 5.66 -40.82 -0.23 7.44 16 44 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 45 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 46 H 0.10 1.66 4.73 -51.93 -0.25 1.42 16 47 H 0.15 1.97 8.06 -52.49 -0.42 1.54 16 48 H 0.40 2.70 9.06 45.56 0.41 3.11 16 LS Contribution 386.73 15.07 5.83 5.83 Total: -1.00 -32.77 386.73 -8.49 -41.26 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -6.67 Total: 12.92 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -2.66 Total: -0.43 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -0.10 Total: -59.97 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.17 Total: -15.72 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.71 Total: 16.12 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.77 -8.49 -41.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000404349.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.862 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds