Wall clock time and date at job start Tue Mar 31 2020 18:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46869 * 2 1 4 4 C 1.50703 * 109.47158 * 179.97438 * 3 2 1 5 5 C 1.38025 * 119.51052 * 125.26182 * 4 3 2 6 6 C 1.39927 * 119.13079 * 180.25521 * 5 4 3 7 7 C 1.48155 * 120.89224 * 179.77333 * 6 5 4 8 8 O 1.21520 * 119.99789 * 140.03780 * 7 6 5 9 9 N 1.34781 * 120.00067 * 320.03868 * 7 6 5 10 10 C 1.46927 * 120.62795 * 174.18205 * 9 7 6 11 11 C 1.53191 * 108.77355 * 126.41680 * 10 9 7 12 12 C 1.53040 * 109.31636 * 54.63067 * 11 10 9 13 13 C 1.53043 * 109.53543 * 298.63871 * 12 11 10 14 14 H 1.09003 * 109.49895 * 301.37767 * 13 12 11 15 15 N 1.46503 * 109.49370 * 181.31468 * 13 12 11 16 16 C 1.36938 * 119.99797 * 154.99729 * 15 13 12 17 17 H 1.07997 * 120.00051 * 359.97438 * 16 15 13 18 18 C 1.38808 * 120.00287 * 179.97438 * 16 15 13 19 19 N 1.31614 * 120.00605 * 179.72534 * 18 16 15 20 20 Si 1.86803 * 119.99720 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47501 * 89.99490 * 20 18 16 22 22 H 1.48500 * 109.46992 * 210.00045 * 20 18 16 23 23 H 1.48501 * 109.47122 * 329.99559 * 20 18 16 24 24 C 1.46924 * 120.62912 * 354.20668 * 9 7 6 25 25 C 1.39623 * 118.21476 * 359.49870 * 6 5 4 26 26 C 1.38846 * 118.94936 * 0.25188 * 25 6 5 27 27 O 1.35676 * 119.62197 * 179.97438 * 26 25 6 28 28 N 1.31879 * 119.51227 * 305.00770 * 4 3 2 29 29 H 1.08998 * 109.47464 * 60.00144 * 1 2 3 30 30 H 1.09002 * 109.47207 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47458 * 299.99646 * 1 2 3 32 32 H 1.08998 * 109.47458 * 240.00354 * 2 1 3 33 33 H 1.08998 * 109.47464 * 119.99856 * 2 1 3 34 34 H 1.09009 * 109.47097 * 60.00343 * 3 2 1 35 35 H 1.08992 * 109.47589 * 300.00361 * 3 2 1 36 36 H 1.07992 * 120.43484 * 0.02562 * 5 4 3 37 37 H 1.08996 * 109.59159 * 6.62452 * 10 9 7 38 38 H 1.09004 * 109.58370 * 246.20037 * 10 9 7 39 39 H 1.09005 * 109.49151 * 294.67777 * 11 10 9 40 40 H 1.09000 * 109.52343 * 174.60065 * 11 10 9 41 41 H 1.08998 * 109.45936 * 178.61629 * 12 11 10 42 42 H 1.09002 * 109.44771 * 58.64541 * 12 11 10 43 43 H 0.97003 * 120.00241 * 335.00125 * 15 13 12 44 44 H 0.96996 * 120.00522 * 180.02562 * 19 18 16 45 45 H 1.08995 * 109.58514 * 113.79906 * 24 9 7 46 46 H 1.09000 * 109.58549 * 353.36694 * 24 9 7 47 47 H 1.07998 * 120.52158 * 180.23234 * 25 6 5 48 48 H 0.96708 * 113.99891 * 90.00541 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.2272 2.1360 -0.9800 6 6 5.6264 2.1262 -0.9750 7 6 6.3959 2.8529 -2.0117 8 8 7.4032 3.4603 -1.7066 9 7 5.9787 2.8403 -3.2933 10 6 6.6561 3.6576 -4.3091 11 6 7.0647 2.7539 -5.4767 12 6 5.8339 2.0042 -5.9915 13 6 5.2667 1.1242 -4.8751 14 1 6.0307 0.4219 -4.5417 15 7 4.1073 0.3832 -5.3781 16 6 3.7452 -0.8008 -4.7931 17 1 4.3145 -1.1885 -3.9613 18 6 2.6464 -1.5027 -5.2693 19 7 2.3015 -2.6434 -4.7106 20 14 1.6621 -0.8325 -6.7085 21 1 2.2301 -1.3486 -7.9799 22 1 0.2474 -1.2672 -6.5859 23 1 1.7262 0.6511 -6.7040 24 6 4.8375 2.0094 -3.7008 25 6 6.2780 1.4181 0.0367 26 6 5.5171 0.7519 0.9880 27 8 6.1361 0.0592 1.9768 28 7 4.1962 0.7844 0.9410 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8901 35 1 1.6766 1.9564 -0.8899 36 1 3.6867 2.6758 -1.7433 37 1 7.5436 4.1181 -3.8753 38 1 5.9777 4.4322 -4.6667 39 1 7.8121 2.0367 -5.1372 40 1 7.4823 3.3620 -6.2791 41 1 6.1173 1.3790 -6.8381 42 1 5.0773 2.7224 -6.3075 43 1 3.5962 0.7312 -6.1255 44 1 1.5339 -3.1341 -5.0435 45 1 4.0109 2.6497 -4.0088 46 1 4.5253 1.3824 -2.8657 47 1 7.3568 1.3889 0.0784 48 1 6.3156 0.5820 2.7704 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000404349.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:26 Heat of formation + Delta-G solvation = -54.937276 kcal Electronic energy + Delta-G solvation = -29838.805476 eV Core-core repulsion = 25893.114056 eV Total energy + Delta-G solvation = -3945.691420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.17133 -40.86097 -38.86749 -38.41100 -36.18328 -35.86503 -34.39091 -33.66174 -32.81039 -31.69686 -30.37489 -27.99135 -27.11545 -25.71449 -24.93822 -24.10347 -22.97971 -22.43103 -21.76103 -20.52776 -19.62010 -19.42669 -18.48562 -17.66678 -17.42645 -16.92009 -16.74677 -16.39358 -16.26120 -15.78064 -15.64943 -15.48227 -15.34407 -15.02269 -14.71857 -14.64686 -14.24288 -14.00620 -13.89422 -13.76505 -13.45275 -13.29296 -12.98361 -12.92026 -12.74988 -12.54982 -12.41190 -12.14734 -12.04544 -11.98237 -11.86628 -11.70780 -11.62290 -11.58078 -11.37025 -11.08843 -10.91975 -10.47267 -9.92817 -9.86570 -9.25531 -7.99441 -5.35810 -0.39419 -0.16211 1.40596 1.42171 1.44933 1.52313 1.80525 2.41363 2.50596 2.56859 3.06288 3.31682 3.39619 3.58398 3.75671 3.83922 3.88261 3.98189 4.03536 4.12019 4.17705 4.22406 4.25578 4.32154 4.36061 4.51888 4.58030 4.64671 4.66798 4.77513 4.81878 4.84726 4.88193 4.90179 4.95517 4.97137 5.08620 5.20719 5.31850 5.35065 5.38645 5.41430 5.45510 5.47459 5.76398 6.14808 6.22895 6.52961 6.79473 6.85710 7.09117 7.81247 8.03062 9.21491 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007642 B = 0.005694 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3663.195313 B = 4916.506186 C = 7562.922607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C -0.063 4.063 4 C 0.150 3.850 5 C -0.144 4.144 6 C -0.075 4.075 7 C 0.562 3.438 8 O -0.563 6.563 9 N -0.591 5.591 10 C 0.107 3.893 11 C -0.120 4.120 12 C -0.122 4.122 13 C 0.166 3.834 14 H 0.029 0.971 15 N -0.740 5.740 16 C -0.232 4.232 17 H 0.046 0.954 18 C -0.055 4.055 19 N -0.980 5.980 20 Si 0.953 3.047 21 H -0.283 1.283 22 H -0.299 1.299 23 H -0.241 1.241 24 C 0.086 3.914 25 C -0.152 4.152 26 C 0.310 3.690 27 O -0.485 6.485 28 N -0.503 5.503 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.031 0.969 33 H 0.060 0.940 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.162 0.838 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.052 0.948 40 H 0.109 0.891 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.371 0.629 44 H 0.257 0.743 45 H 0.089 0.911 46 H 0.075 0.925 47 H 0.152 0.848 48 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.978 16.367 5.822 17.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C -0.101 4.101 4 C 0.012 3.988 5 C -0.164 4.164 6 C -0.086 4.086 7 C 0.350 3.650 8 O -0.443 6.443 9 N -0.322 5.322 10 C -0.014 4.014 11 C -0.159 4.159 12 C -0.160 4.160 13 C 0.057 3.943 14 H 0.047 0.953 15 N -0.384 5.384 16 C -0.363 4.363 17 H 0.064 0.936 18 C -0.247 4.247 19 N -0.630 5.630 20 Si 0.780 3.220 21 H -0.209 1.209 22 H -0.226 1.226 23 H -0.165 1.165 24 C -0.039 4.039 25 C -0.174 4.174 26 C 0.130 3.870 27 O -0.295 6.295 28 N -0.223 5.223 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.180 0.820 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.071 0.929 40 H 0.128 0.872 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.205 0.795 44 H 0.066 0.934 45 H 0.107 0.893 46 H 0.093 0.907 47 H 0.170 0.830 48 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 3.092 15.591 6.359 17.120 hybrid contribution -0.019 -0.073 -0.815 0.818 sum 3.073 15.519 5.544 16.763 Atomic orbital electron populations 1.21712 0.93962 1.01868 1.02622 1.21363 0.97108 0.95855 1.01055 1.20703 0.86076 0.98204 1.05074 1.21350 0.97852 0.90781 0.88777 1.22422 0.92926 1.01139 0.99903 1.20231 0.94381 0.98238 0.95717 1.18270 0.83704 0.80197 0.82808 1.90731 1.25828 1.46084 1.81697 1.48140 1.32768 1.44092 1.07221 1.21907 0.98541 0.93229 0.87699 1.21837 0.97060 0.98873 0.98125 1.21811 0.98213 0.98643 0.97373 1.20624 0.88361 0.91886 0.93442 0.95267 1.42609 1.33565 1.23202 1.39000 1.18852 1.08970 0.96923 1.11567 0.93593 1.25469 0.99953 0.97025 1.02278 1.69900 1.29920 1.17486 1.45699 0.85458 0.77484 0.79723 0.79358 1.20925 1.22631 1.16461 1.22909 0.87848 0.93466 0.99644 1.22176 1.02398 0.97388 0.95398 1.19016 0.86686 0.90504 0.90746 1.84774 1.76762 1.39798 1.28165 1.66814 1.10238 1.18347 1.26916 0.92370 0.93344 0.90642 0.95021 0.92141 0.87572 0.88333 0.82033 0.89254 0.88537 0.92884 0.87239 0.91376 0.89873 0.79485 0.93419 0.89306 0.90677 0.83017 0.71678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.91 71.98 0.71 -2.76 16 2 C -0.12 -3.37 5.79 30.59 0.18 -3.19 16 3 C -0.06 -1.52 5.61 29.85 0.17 -1.35 16 4 C 0.15 4.33 6.18 42.50 0.26 4.60 16 5 C -0.14 -4.03 7.09 22.63 0.16 -3.87 16 6 C -0.07 -2.27 5.15 -19.90 -0.10 -2.37 16 7 C 0.56 17.39 7.38 86.88 0.64 18.03 16 8 O -0.56 -19.62 16.37 -3.78 -0.06 -19.68 16 9 N -0.59 -16.08 2.97 -821.96 -2.44 -18.52 16 10 C 0.11 2.27 6.44 86.36 0.56 2.83 16 11 C -0.12 -2.43 6.08 30.67 0.19 -2.25 16 12 C -0.12 -3.02 5.35 30.62 0.16 -2.86 16 13 C 0.17 5.68 2.92 45.07 0.13 5.81 16 14 H 0.03 1.17 8.08 -2.39 -0.02 1.15 16 15 N -0.74 -31.13 4.93 -322.57 -1.59 -32.71 16 16 C -0.23 -12.52 10.41 84.03 0.88 -11.64 16 17 H 0.05 2.83 8.06 -2.91 -0.02 2.81 16 18 C -0.06 -3.10 5.50 84.86 0.47 -2.64 16 19 N -0.98 -61.16 13.97 21.65 0.30 -60.86 16 20 Si 0.95 42.58 27.74 68.60 1.90 44.48 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 23 H -0.24 -9.22 6.52 99.48 0.65 -8.57 16 24 C 0.09 2.58 4.52 86.36 0.39 2.97 16 25 C -0.15 -4.50 9.70 22.75 0.22 -4.28 16 26 C 0.31 9.19 7.74 84.78 0.66 9.85 16 27 O -0.48 -12.11 13.56 -89.94 -1.22 -13.33 16 28 N -0.50 -15.75 9.87 -297.16 -2.93 -18.68 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.84 7.94 -2.39 -0.02 1.83 16 34 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.10 2.06 7.86 -2.39 -0.02 2.04 16 36 H 0.16 3.89 6.53 -2.91 -0.02 3.87 16 37 H 0.09 2.00 7.00 -2.39 -0.02 1.98 16 38 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 43 H 0.37 14.56 5.66 -92.71 -0.52 14.04 16 44 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 45 H 0.09 2.34 8.13 -2.39 -0.02 2.32 16 46 H 0.07 2.61 4.73 -2.39 -0.01 2.60 16 47 H 0.15 4.19 8.06 -2.91 -0.02 4.16 16 48 H 0.42 5.50 9.06 -74.05 -0.67 4.83 16 Total: -1.00 -74.19 386.73 -0.64 -74.84 By element: Atomic # 1 Polarization: 37.88 SS G_CDS: -0.27 Total: 37.61 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 5.67 Total: 6.87 kcal Atomic # 7 Polarization: -124.12 SS G_CDS: -6.66 Total: -130.78 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -1.28 Total: -33.01 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.90 Total: 44.48 kcal Total: -74.19 -0.64 -74.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000404349.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.899 kcal (2) G-P(sol) polarization free energy of solvation -74.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds