Wall clock time and date at job start Tue Mar 31 2020 18:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.47275 * 2 1 4 4 N 1.29939 * 125.37908 * 90.01056 * 3 2 1 5 5 C 1.36069 * 108.47363 * 179.97438 * 4 3 2 6 6 C 1.47425 * 126.44348 * 180.26551 * 5 4 3 7 7 O 1.21608 * 119.99438 * 179.68944 * 6 5 4 8 8 N 1.34776 * 120.00135 * 359.69076 * 6 5 4 9 9 C 1.46494 * 119.99962 * 180.02562 * 8 6 5 10 10 H 1.09009 * 115.55250 * 350.67817 * 9 8 6 11 11 C 1.53021 * 117.50427 * 136.41293 * 9 8 6 12 12 C 1.52816 * 117.50153 * 205.00245 * 9 8 6 13 13 C 1.53183 * 117.71438 * 144.89863 * 12 9 8 14 14 C 1.53355 * 108.76873 * 158.88743 * 13 12 9 15 15 N 1.46834 * 108.81838 * 51.30278 * 14 13 12 16 16 C 1.36938 * 120.38429 * 123.12082 * 15 14 13 17 17 H 1.07999 * 120.00517 * 208.88972 * 16 15 14 18 18 C 1.38815 * 119.99919 * 28.88868 * 16 15 14 19 19 N 1.31620 * 119.99982 * 17.84887 * 18 16 15 20 20 Si 1.86794 * 120.00242 * 197.85240 * 18 16 15 21 21 H 1.48503 * 109.47234 * 59.99690 * 20 18 16 22 22 H 1.48499 * 109.47571 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47023 * 300.00016 * 20 18 16 24 24 C 1.46844 * 119.23401 * 303.10371 * 15 14 13 25 25 C 1.53177 * 117.71456 * 0.13183 * 12 9 8 26 26 C 1.36093 * 107.10528 * 0.02562 * 5 4 3 27 27 C 1.50697 * 126.52334 * 180.02562 * 26 5 4 28 28 O 1.34050 * 125.37451 * 269.97420 * 3 2 1 29 29 H 1.09000 * 109.46890 * 59.99912 * 1 2 3 30 30 H 1.09003 * 109.46970 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46866 * 300.00150 * 1 2 3 32 32 H 1.09001 * 109.47317 * 239.99819 * 2 1 3 33 33 H 1.08997 * 109.47038 * 119.99578 * 2 1 3 34 34 H 0.96999 * 119.99558 * 0.02562 * 8 6 5 35 35 H 1.09005 * 117.50333 * 214.95279 * 11 9 8 36 36 H 1.08996 * 117.50443 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.58668 * 278.66876 * 13 12 9 38 38 H 1.08995 * 109.59152 * 39.09988 * 13 12 9 39 39 H 1.09001 * 109.57954 * 291.49966 * 14 13 12 40 40 H 1.09002 * 109.57847 * 171.10767 * 14 13 12 41 41 H 0.96996 * 120.00141 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.57991 * 297.10149 * 24 15 14 43 43 H 1.09005 * 109.58293 * 176.70337 * 24 15 14 44 44 H 1.08996 * 109.59177 * 320.91044 * 25 12 9 45 45 H 1.09003 * 109.58696 * 81.33746 * 25 12 9 46 46 H 1.08994 * 109.47214 * 90.00085 * 27 26 5 47 47 H 1.09001 * 109.46550 * 209.99695 * 27 26 5 48 48 H 1.08999 * 109.47023 * 329.99493 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2834 2.1300 1.0594 5 6 2.7179 3.3573 0.6638 6 6 3.1177 4.4704 1.5438 7 8 3.4951 5.5212 1.0617 8 7 3.0650 4.3235 2.8825 9 6 3.4617 5.4299 3.7569 10 1 3.9346 6.2765 3.2590 11 6 2.5742 5.7271 4.9675 12 6 3.9446 5.0792 5.1637 13 6 5.0576 5.9395 5.7701 14 6 5.0234 5.7871 7.2956 15 7 5.0245 4.3571 7.6290 16 6 5.9987 3.8351 8.4374 17 1 6.2980 2.8035 8.3255 18 6 6.6018 4.6321 9.4008 19 7 6.0251 5.7513 9.7842 20 14 8.2319 4.1161 10.1531 21 1 9.2575 4.0066 9.0847 22 1 8.6611 5.1311 11.1485 23 1 8.0733 2.8006 10.8236 24 6 3.9686 3.4932 7.0856 25 6 3.9816 3.5989 5.5559 26 6 2.7190 3.3619 -0.6972 27 6 3.1245 4.5063 -1.5898 28 8 2.2916 2.1523 -1.0930 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.7643 3.4853 3.2669 35 1 2.4628 6.7695 5.2662 36 1 1.6953 5.0992 5.1135 37 1 6.0240 5.6068 5.3912 38 1 4.8982 6.9843 5.5035 39 1 4.1200 6.2532 7.6891 40 1 5.9018 6.2643 7.7302 41 1 6.4462 6.3080 10.4577 42 1 2.9998 3.8172 7.4660 43 1 4.1529 2.4606 7.3821 44 1 3.1083 3.0906 5.1470 45 1 4.8900 3.1401 5.1656 46 1 4.1908 4.4388 -1.8054 47 1 2.5616 4.4571 -2.5219 48 1 2.9144 5.4508 -1.0878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016874660.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:59 Heat of formation + Delta-G solvation = 21.028456 kcal Electronic energy + Delta-G solvation = -28647.218705 eV Core-core repulsion = 24704.821406 eV Total energy + Delta-G solvation = -3942.397299 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.72208 -39.86668 -38.34838 -35.50515 -35.34008 -34.41213 -33.04266 -31.92090 -31.53447 -29.97622 -28.33203 -27.43574 -25.01648 -24.31276 -23.45048 -22.43406 -22.09344 -21.27281 -20.55115 -20.30948 -18.29144 -18.00842 -17.26262 -16.52854 -16.18473 -15.92380 -15.10883 -14.95024 -14.76324 -14.72074 -14.21909 -14.04188 -13.73938 -13.54343 -13.47560 -13.29487 -13.05819 -12.96310 -12.74068 -12.64817 -12.21074 -12.18676 -11.69888 -11.63972 -11.59182 -11.46949 -11.27765 -11.02950 -10.94098 -10.69526 -10.42353 -10.31210 -10.18928 -9.92487 -9.66267 -9.60081 -9.32599 -9.06934 -8.41992 -8.40894 -6.61045 -5.76245 -3.19186 0.84548 1.75748 2.16048 3.00994 3.15336 3.40154 3.45972 3.47628 3.55918 4.22638 4.29060 4.51248 4.52337 4.60521 4.66587 4.84953 4.95383 5.01711 5.14366 5.17087 5.17830 5.20989 5.31732 5.41753 5.44249 5.54430 5.58150 5.65535 5.67336 5.74242 5.79951 5.93283 6.09398 6.12512 6.14462 6.33467 6.48811 6.58597 6.65257 6.68646 6.73563 6.87078 7.00921 7.18265 7.39788 7.56294 7.69930 7.82066 8.13743 8.49432 9.24700 9.88360 10.45178 11.31540 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017362 B = 0.002463 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.347829 B =11366.875830 C =12089.477906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.026 4.026 3 C 0.194 3.806 4 N -0.455 5.455 5 C -0.074 4.074 6 C 0.605 3.395 7 O -0.539 6.539 8 N -0.676 5.676 9 C 0.066 3.934 10 H 0.134 0.866 11 C -0.181 4.181 12 C -0.094 4.094 13 C -0.105 4.105 14 C 0.173 3.827 15 N -0.589 5.589 16 C -0.254 4.254 17 H 0.064 0.936 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.901 3.099 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.151 3.849 25 C -0.098 4.098 26 C 0.039 3.961 27 C -0.076 4.076 28 O -0.197 6.197 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.409 0.591 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.018 0.982 40 H 0.090 0.910 41 H 0.254 0.746 42 H 0.019 0.981 43 H 0.054 0.946 44 H 0.046 0.954 45 H 0.064 0.936 46 H 0.092 0.908 47 H 0.079 0.921 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.799 -7.398 -22.718 26.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.064 4.064 3 C -0.015 4.015 4 N -0.185 5.185 5 C -0.194 4.194 6 C 0.391 3.609 7 O -0.417 6.417 8 N -0.324 5.324 9 C -0.039 4.039 10 H 0.152 0.848 11 C -0.219 4.219 12 C -0.096 4.096 13 C -0.145 4.145 14 C 0.047 3.953 15 N -0.311 5.311 16 C -0.383 4.383 17 H 0.081 0.919 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.731 3.269 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.209 1.209 24 C 0.024 3.976 25 C -0.137 4.137 26 C -0.017 4.017 27 C -0.132 4.132 28 O -0.085 6.085 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.128 0.872 34 H 0.246 0.754 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.037 0.963 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.111 0.889 47 H 0.098 0.902 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.546 -6.752 -22.288 25.565 hybrid contribution 0.680 -0.460 -0.028 0.821 sum -9.865 -7.212 -22.316 25.443 Atomic orbital electron populations 1.21799 0.92916 1.03152 1.03057 1.20125 0.96970 0.83818 1.05499 1.26237 1.00130 0.96901 0.78206 1.70744 1.15293 1.02495 1.29947 1.21497 1.11069 0.94526 0.92297 1.16634 0.77521 0.84989 0.81803 1.90761 1.48256 1.27462 1.75186 1.45188 1.65328 1.17133 1.04779 1.21965 1.03916 0.92243 0.85789 0.84836 1.23537 0.95006 1.02238 1.01123 1.21969 0.95691 0.97302 0.94627 1.21885 0.95876 0.96197 1.00513 1.20766 1.01297 0.85261 0.87963 1.43965 1.27576 1.04344 1.55256 1.19149 1.11915 0.97072 1.10191 0.91867 1.25041 0.99737 0.98221 0.96594 1.70024 1.37609 1.15132 1.31820 0.86391 0.84276 0.77639 0.78589 1.21048 1.21652 1.20905 1.20836 0.91843 0.95019 0.89914 1.21632 1.00137 0.92131 0.99846 1.23734 0.97844 0.85631 0.94514 1.20602 1.02549 0.92432 0.97622 1.84319 1.63885 1.22269 1.37991 0.92192 0.90701 0.91572 0.88737 0.87242 0.75394 0.88186 0.89006 0.92108 0.92973 0.96340 0.89163 0.93590 0.96299 0.92741 0.93495 0.91776 0.88949 0.90206 0.86854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.90 37.16 0.37 -0.41 16 2 C -0.03 -0.16 6.56 -27.88 -0.18 -0.34 16 3 C 0.19 1.99 7.56 -13.08 -0.10 1.89 16 4 N -0.46 -5.78 11.06 -7.65 -0.08 -5.87 16 5 C -0.07 -1.00 6.99 -83.02 -0.58 -1.58 16 6 C 0.60 9.15 7.81 -12.52 -0.10 9.05 16 7 O -0.54 -8.96 14.37 5.27 0.08 -8.89 16 8 N -0.68 -9.92 5.34 -54.96 -0.29 -10.22 16 9 C 0.07 1.02 6.14 -68.02 -0.42 0.61 16 10 H 0.13 2.15 7.40 -51.92 -0.38 1.77 16 11 C -0.18 -2.74 9.86 -26.80 -0.26 -3.00 16 12 C -0.09 -1.62 1.94 -154.50 -0.30 -1.92 16 13 C -0.11 -2.04 5.83 -26.45 -0.15 -2.20 16 14 C 0.17 4.12 5.40 -3.68 -0.02 4.11 16 15 N -0.59 -14.78 2.94 -172.26 -0.51 -15.29 16 16 C -0.25 -6.99 9.54 -15.06 -0.14 -7.13 16 17 H 0.06 1.71 7.89 -52.49 -0.41 1.30 16 18 C 0.00 0.07 4.88 -17.43 -0.09 -0.01 16 19 N -0.90 -26.20 11.23 55.49 0.62 -25.58 16 20 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.15 3.17 6.51 -3.67 -0.02 3.14 16 25 C -0.10 -1.72 5.37 -26.46 -0.14 -1.87 16 26 C 0.04 0.45 7.44 -35.08 -0.26 0.19 16 27 C -0.08 -0.65 9.87 36.00 0.36 -0.30 16 28 O -0.20 -2.11 10.73 6.50 0.07 -2.04 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.41 5.72 6.85 -40.82 -0.28 5.44 16 35 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 36 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 2.41 5.93 -51.93 -0.31 2.10 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.05 1.12 7.92 -51.93 -0.41 0.71 16 44 H 0.05 0.71 6.75 -51.93 -0.35 0.36 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.11 1.12 6.49 -51.93 -0.34 0.78 16 LS Contribution 389.68 15.07 5.87 5.87 Total: -1.00 -32.12 389.68 -8.86 -40.97 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -7.54 Total: 4.03 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -2.05 Total: 0.24 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -0.26 Total: -56.95 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.15 Total: -10.92 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.12 -8.86 -40.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016874660.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.003 kcal (2) G-P(sol) polarization free energy of solvation -32.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds