Wall clock time and date at job start Tue Mar 31 2020 18:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.47275 * 2 1 4 4 N 1.29939 * 125.37908 * 90.01056 * 3 2 1 5 5 C 1.36069 * 108.47363 * 179.97438 * 4 3 2 6 6 C 1.47425 * 126.44348 * 180.26551 * 5 4 3 7 7 O 1.21608 * 119.99438 * 179.68944 * 6 5 4 8 8 N 1.34776 * 120.00135 * 359.69076 * 6 5 4 9 9 C 1.46494 * 119.99962 * 180.02562 * 8 6 5 10 10 H 1.09009 * 115.55250 * 350.67817 * 9 8 6 11 11 C 1.53021 * 117.50427 * 136.41293 * 9 8 6 12 12 C 1.52816 * 117.50153 * 205.00245 * 9 8 6 13 13 C 1.53183 * 117.71438 * 144.89863 * 12 9 8 14 14 C 1.53355 * 108.76873 * 158.88743 * 13 12 9 15 15 N 1.46834 * 108.81838 * 51.30278 * 14 13 12 16 16 C 1.36938 * 120.38429 * 123.12082 * 15 14 13 17 17 H 1.07999 * 120.00517 * 208.88972 * 16 15 14 18 18 C 1.38815 * 119.99919 * 28.88868 * 16 15 14 19 19 N 1.31620 * 119.99982 * 17.84887 * 18 16 15 20 20 Si 1.86794 * 120.00242 * 197.85240 * 18 16 15 21 21 H 1.48503 * 109.47234 * 59.99690 * 20 18 16 22 22 H 1.48499 * 109.47571 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47023 * 300.00016 * 20 18 16 24 24 C 1.46844 * 119.23401 * 303.10371 * 15 14 13 25 25 C 1.53177 * 117.71456 * 0.13183 * 12 9 8 26 26 C 1.36093 * 107.10528 * 0.02562 * 5 4 3 27 27 C 1.50697 * 126.52334 * 180.02562 * 26 5 4 28 28 O 1.34050 * 125.37451 * 269.97420 * 3 2 1 29 29 H 1.09000 * 109.46890 * 59.99912 * 1 2 3 30 30 H 1.09003 * 109.46970 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46866 * 300.00150 * 1 2 3 32 32 H 1.09001 * 109.47317 * 239.99819 * 2 1 3 33 33 H 1.08997 * 109.47038 * 119.99578 * 2 1 3 34 34 H 0.96999 * 119.99558 * 0.02562 * 8 6 5 35 35 H 1.09005 * 117.50333 * 214.95279 * 11 9 8 36 36 H 1.08996 * 117.50443 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.58668 * 278.66876 * 13 12 9 38 38 H 1.08995 * 109.59152 * 39.09988 * 13 12 9 39 39 H 1.09001 * 109.57954 * 291.49966 * 14 13 12 40 40 H 1.09002 * 109.57847 * 171.10767 * 14 13 12 41 41 H 0.96996 * 120.00141 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.57991 * 297.10149 * 24 15 14 43 43 H 1.09005 * 109.58293 * 176.70337 * 24 15 14 44 44 H 1.08996 * 109.59177 * 320.91044 * 25 12 9 45 45 H 1.09003 * 109.58696 * 81.33746 * 25 12 9 46 46 H 1.08994 * 109.47214 * 90.00085 * 27 26 5 47 47 H 1.09001 * 109.46550 * 209.99695 * 27 26 5 48 48 H 1.08999 * 109.47023 * 329.99493 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2834 2.1300 1.0594 5 6 2.7179 3.3573 0.6638 6 6 3.1177 4.4704 1.5438 7 8 3.4951 5.5212 1.0617 8 7 3.0650 4.3235 2.8825 9 6 3.4617 5.4299 3.7569 10 1 3.9346 6.2765 3.2590 11 6 2.5742 5.7271 4.9675 12 6 3.9446 5.0792 5.1637 13 6 5.0576 5.9395 5.7701 14 6 5.0234 5.7871 7.2956 15 7 5.0245 4.3571 7.6290 16 6 5.9987 3.8351 8.4374 17 1 6.2980 2.8035 8.3255 18 6 6.6018 4.6321 9.4008 19 7 6.0251 5.7513 9.7842 20 14 8.2319 4.1161 10.1531 21 1 9.2575 4.0066 9.0847 22 1 8.6611 5.1311 11.1485 23 1 8.0733 2.8006 10.8236 24 6 3.9686 3.4932 7.0856 25 6 3.9816 3.5989 5.5559 26 6 2.7190 3.3619 -0.6972 27 6 3.1245 4.5063 -1.5898 28 8 2.2916 2.1523 -1.0930 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.7643 3.4853 3.2669 35 1 2.4628 6.7695 5.2662 36 1 1.6953 5.0992 5.1135 37 1 6.0240 5.6068 5.3912 38 1 4.8982 6.9843 5.5035 39 1 4.1200 6.2532 7.6891 40 1 5.9018 6.2643 7.7302 41 1 6.4462 6.3080 10.4577 42 1 2.9998 3.8172 7.4660 43 1 4.1529 2.4606 7.3821 44 1 3.1083 3.0906 5.1470 45 1 4.8900 3.1401 5.1656 46 1 4.1908 4.4388 -1.8054 47 1 2.5616 4.4571 -2.5219 48 1 2.9144 5.4508 -1.0878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016874660.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:58 Heat of formation + Delta-G solvation = -0.200199 kcal Electronic energy + Delta-G solvation = -28648.139249 eV Core-core repulsion = 24704.821406 eV Total energy + Delta-G solvation = -3943.317842 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.55847 -41.12115 -39.72237 -37.17052 -36.16960 -35.08332 -34.48205 -33.32856 -32.59917 -31.67189 -30.02614 -28.25382 -26.26287 -25.78253 -24.25983 -24.06218 -23.16058 -22.64854 -21.78766 -21.39049 -19.82514 -19.16398 -18.29395 -18.08880 -17.37543 -16.98487 -16.70714 -15.93698 -15.82664 -15.78851 -15.55153 -15.31603 -15.09528 -14.90655 -14.78698 -14.40544 -14.16879 -14.13238 -13.81208 -13.55079 -13.34722 -13.32120 -13.10962 -12.89741 -12.64450 -12.59793 -12.56540 -12.38012 -12.28916 -12.05941 -12.03412 -11.91194 -11.80231 -11.42800 -11.35102 -11.23435 -10.74875 -10.47626 -9.98338 -9.65207 -8.62565 -7.86178 -5.32331 -0.04943 0.87214 1.38085 1.46263 1.49105 1.55654 1.91727 2.07648 2.51682 2.77756 2.92197 3.28373 3.49793 3.58832 3.63605 3.77622 3.83880 3.95757 4.05998 4.10796 4.21090 4.24073 4.34936 4.49858 4.51409 4.54958 4.58457 4.71077 4.82025 4.83602 4.86940 4.90406 4.97022 5.00435 5.00732 5.04615 5.06353 5.11639 5.15140 5.29099 5.33352 5.35628 5.42040 5.53649 5.65413 5.77373 6.23096 6.41264 6.52068 6.99657 7.16513 7.88488 8.39802 9.18923 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017362 B = 0.002463 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.347829 B =11366.875830 C =12089.477906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.026 4.026 3 C 0.201 3.799 4 N -0.481 5.481 5 C -0.106 4.106 6 C 0.603 3.397 7 O -0.559 6.559 8 N -0.674 5.674 9 C 0.083 3.917 10 H 0.130 0.870 11 C -0.166 4.166 12 C -0.114 4.114 13 C -0.092 4.092 14 C 0.180 3.820 15 N -0.608 5.608 16 C -0.265 4.265 17 H 0.063 0.937 18 C -0.049 4.049 19 N -0.932 5.932 20 Si 0.965 3.035 21 H -0.280 1.280 22 H -0.293 1.293 23 H -0.275 1.275 24 C 0.147 3.853 25 C -0.083 4.083 26 C 0.046 3.954 27 C -0.075 4.075 28 O -0.195 6.195 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.049 0.951 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.413 0.587 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.001 0.999 40 H 0.055 0.945 41 H 0.250 0.750 42 H 0.018 0.982 43 H 0.053 0.947 44 H 0.076 0.924 45 H 0.053 0.947 46 H 0.103 0.897 47 H 0.107 0.893 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.628 -8.938 -24.897 28.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.064 4.064 3 C -0.009 4.009 4 N -0.210 5.210 5 C -0.225 4.225 6 C 0.390 3.610 7 O -0.439 6.439 8 N -0.322 5.322 9 C -0.023 4.023 10 H 0.148 0.852 11 C -0.204 4.204 12 C -0.115 4.115 13 C -0.132 4.132 14 C 0.055 3.945 15 N -0.331 5.331 16 C -0.396 4.396 17 H 0.081 0.919 18 C -0.244 4.244 19 N -0.578 5.578 20 Si 0.793 3.207 21 H -0.207 1.207 22 H -0.219 1.219 23 H -0.200 1.200 24 C 0.022 3.978 25 C -0.122 4.122 26 C -0.011 4.011 27 C -0.131 4.131 28 O -0.083 6.083 29 H 0.077 0.923 30 H 0.116 0.884 31 H 0.069 0.931 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.251 0.749 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.020 0.980 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.036 0.964 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.071 0.929 46 H 0.121 0.879 47 H 0.126 0.874 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.392 -8.317 -24.480 28.253 hybrid contribution 0.872 -0.044 0.591 1.054 sum -10.520 -8.361 -23.889 27.409 Atomic orbital electron populations 1.21786 0.92169 1.04378 1.02206 1.20432 0.97424 0.81448 1.07107 1.27151 0.98340 0.97845 0.77528 1.70711 1.16662 1.02556 1.31119 1.21382 1.13343 0.94791 0.92941 1.16870 0.76965 0.85225 0.81904 1.90743 1.49225 1.28393 1.75521 1.45138 1.65312 1.17036 1.04734 1.21763 1.03288 0.92092 0.85135 0.85250 1.23616 0.94153 1.02753 0.99902 1.21812 0.96441 0.96728 0.96537 1.21636 0.96424 0.97965 0.97151 1.20547 0.98749 0.84550 0.90692 1.44222 1.28380 1.05106 1.55383 1.19468 1.12632 0.97222 1.10251 0.91894 1.25777 1.02757 0.98485 0.97422 1.70171 1.38882 1.16228 1.32530 0.85385 0.80355 0.77330 0.77646 1.20666 1.21917 1.20037 1.20966 0.90545 0.94199 0.92106 1.21425 1.00950 0.92844 0.96992 1.24181 0.96355 0.86271 0.94299 1.20698 1.03579 0.90666 0.98116 1.84358 1.63795 1.22018 1.38102 0.92309 0.88439 0.93137 0.86231 0.86475 0.74934 0.87371 0.87686 0.93371 0.91043 0.98042 0.92635 0.94057 0.96362 0.92814 0.90562 0.92860 0.87873 0.87441 0.88178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.90 71.98 0.71 -0.45 16 2 C -0.03 -0.24 6.56 29.85 0.20 -0.05 16 3 C 0.20 3.74 7.56 88.39 0.67 4.40 16 4 N -0.48 -11.63 11.06 -293.03 -3.24 -14.87 16 5 C -0.11 -2.77 6.99 40.41 0.28 -2.48 16 6 C 0.60 17.78 7.81 86.66 0.68 18.46 16 7 O -0.56 -18.29 14.37 -4.06 -0.06 -18.35 16 8 N -0.67 -18.93 5.34 -446.06 -2.38 -21.31 16 9 C 0.08 2.45 6.14 44.94 0.28 2.72 16 10 H 0.13 4.01 7.40 -2.38 -0.02 3.99 16 11 C -0.17 -4.71 9.86 30.55 0.30 -4.40 16 12 C -0.11 -3.79 1.94 -52.17 -0.10 -3.89 16 13 C -0.09 -3.60 5.83 30.77 0.18 -3.42 16 14 C 0.18 8.83 5.40 86.43 0.47 9.30 16 15 N -0.61 -31.03 2.94 -698.90 -2.05 -33.08 16 16 C -0.27 -14.87 9.54 84.03 0.80 -14.07 16 17 H 0.06 3.45 7.89 -2.91 -0.02 3.42 16 18 C -0.05 -2.77 4.88 84.86 0.41 -2.35 16 19 N -0.93 -55.72 11.23 21.65 0.24 -55.47 16 20 Si 0.96 45.48 29.59 68.60 2.03 47.51 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 22 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 23 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 24 C 0.15 6.17 6.51 86.43 0.56 6.73 16 25 C -0.08 -2.83 5.37 30.77 0.17 -2.66 16 26 C 0.05 0.99 7.44 25.19 0.19 1.18 16 27 C -0.07 -1.15 9.87 71.24 0.70 -0.45 16 28 O -0.20 -3.77 10.73 0.35 0.00 -3.77 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.41 10.90 6.85 -92.71 -0.63 10.26 16 35 H 0.11 2.93 8.14 -2.38 -0.02 2.91 16 36 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 2.46 8.10 -2.39 -0.02 2.44 16 39 H 0.00 0.07 8.14 -2.39 -0.02 0.06 16 40 H 0.06 3.09 5.93 -2.39 -0.01 3.08 16 41 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 42 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 43 H 0.05 2.21 7.92 -2.38 -0.02 2.19 16 44 H 0.08 2.15 6.75 -2.39 -0.02 2.13 16 45 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.10 1.88 6.49 -2.39 -0.02 1.86 16 Total: -1.00 -70.68 389.68 1.38 -69.31 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.34 Total: 21.46 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 6.49 Total: 8.58 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -7.43 Total: -124.74 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.05 Total: -22.12 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -70.68 1.38 -69.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016874660.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.109 kcal (2) G-P(sol) polarization free energy of solvation -70.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds