Wall clock time and date at job start Tue Mar 31 2020 17:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47134 * 2 1 4 4 O 1.33487 * 126.83266 * 270.10534 * 3 2 1 5 5 N 1.20663 * 113.15869 * 180.30070 * 4 3 2 6 6 C 1.30012 * 112.29836 * 359.75706 * 5 4 3 7 7 C 1.50703 * 127.33434 * 180.02562 * 6 5 4 8 8 C 1.37363 * 126.82410 * 90.00168 * 3 2 1 9 9 C 1.47399 * 128.56931 * 359.97438 * 8 3 2 10 10 O 1.21600 * 120.00210 * 269.70403 * 9 8 3 11 11 N 1.34781 * 119.99630 * 89.70400 * 9 8 3 12 12 C 1.46499 * 119.99611 * 180.02562 * 11 9 8 13 13 H 1.08997 * 115.56887 * 9.28931 * 12 11 9 14 14 C 1.53040 * 117.49670 * 223.58139 * 12 11 9 15 15 C 1.52822 * 117.49888 * 154.99881 * 12 11 9 16 16 C 1.53178 * 117.71571 * 359.85967 * 15 12 11 17 17 C 1.53354 * 108.76913 * 158.87857 * 16 15 12 18 18 N 1.46839 * 108.81141 * 51.30384 * 17 16 15 19 19 C 1.36943 * 120.37901 * 123.11274 * 18 17 16 20 20 H 1.07999 * 119.99950 * 331.22649 * 19 18 17 21 21 C 1.38811 * 120.00018 * 151.22549 * 19 18 17 22 22 N 1.31614 * 120.00086 * 342.28730 * 21 19 18 23 23 Si 1.86795 * 119.99850 * 162.29129 * 21 19 18 24 24 H 1.48497 * 109.47278 * 269.99729 * 23 21 19 25 25 H 1.48506 * 109.47387 * 29.99734 * 23 21 19 26 26 H 1.48499 * 109.47414 * 150.00053 * 23 21 19 27 27 C 1.46844 * 119.24249 * 303.37737 * 18 17 16 28 28 C 1.52871 * 109.07030 * 56.58865 * 27 18 17 29 29 H 1.08992 * 109.46875 * 59.99794 * 1 2 3 30 30 H 1.08993 * 109.46809 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46788 * 299.99968 * 1 2 3 32 32 H 1.09002 * 109.47449 * 240.00384 * 2 1 3 33 33 H 1.08999 * 109.47166 * 119.99955 * 2 1 3 34 34 H 1.09006 * 109.46982 * 270.00384 * 7 6 5 35 35 H 1.09004 * 109.46926 * 30.00081 * 7 6 5 36 36 H 1.08995 * 109.47600 * 149.99912 * 7 6 5 37 37 H 0.97000 * 119.99862 * 359.97438 * 11 9 8 38 38 H 1.09003 * 117.50143 * 145.04778 * 14 12 11 39 39 H 1.08991 * 117.53174 * 359.97438 * 14 12 11 40 40 H 1.09003 * 109.59144 * 39.08914 * 16 15 12 41 41 H 1.09007 * 109.58622 * 278.65860 * 16 15 12 42 42 H 1.08997 * 109.57212 * 291.50879 * 17 16 15 43 43 H 1.08995 * 109.58051 * 171.10607 * 17 16 15 44 44 H 0.96999 * 120.00333 * 180.02562 * 22 21 19 45 45 H 1.09000 * 109.57737 * 176.41847 * 27 18 17 46 46 H 1.08990 * 109.58155 * 296.82534 * 27 18 17 47 47 H 1.09009 * 109.66214 * 189.04410 * 28 27 18 48 48 H 1.09001 * 109.45030 * 68.65491 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2972 2.1760 -1.0684 5 7 2.6940 3.2792 -0.7832 6 6 2.7610 3.4623 0.5022 7 6 3.2082 4.7062 1.2261 8 6 2.3068 2.1970 1.0996 9 6 2.1825 1.8468 2.5259 10 8 1.1402 2.0586 3.1154 11 7 3.2240 1.2916 3.1767 12 6 3.1003 0.9430 4.5942 13 1 2.0954 1.0146 5.0103 14 6 4.2725 1.2943 5.5133 15 6 4.0092 -0.1621 5.1310 16 6 4.9796 -0.8260 4.1493 17 6 6.1153 -1.4810 4.9449 18 7 5.5319 -2.3319 5.9898 19 6 5.8457 -3.6633 6.0539 20 1 6.1101 -4.1997 5.1546 21 6 5.8238 -4.3236 7.2748 22 7 5.8498 -3.6348 8.3960 23 14 5.7575 -6.1896 7.3264 24 1 4.3408 -6.6344 7.3419 25 1 6.4367 -6.7425 6.1270 26 1 6.4423 -6.6757 8.5511 27 6 4.6037 -1.7400 6.9617 28 6 3.4422 -1.0891 6.2106 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.2833 4.6589 1.3996 35 1 2.9761 5.5823 0.6205 36 1 2.6887 4.7771 2.1817 37 1 4.0553 1.1223 2.7063 38 1 4.0386 1.5970 6.5340 39 1 5.1359 1.7844 5.0636 40 1 5.3913 -0.0733 3.4769 41 1 4.4526 -1.5858 3.5720 42 1 6.7317 -0.7085 5.4047 43 1 6.7257 -2.0889 4.2773 44 1 5.8349 -4.0961 9.2491 45 1 4.2196 -2.5186 7.6208 46 1 5.1238 -0.9842 7.5501 47 1 2.8337 -0.5110 6.9061 48 1 2.8323 -1.8630 5.7443 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016968793.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:51 Heat of formation + Delta-G solvation = 59.450574 kcal Electronic energy + Delta-G solvation = -29120.850744 eV Core-core repulsion = 25180.119553 eV Total energy + Delta-G solvation = -3940.731191 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.13341 -40.02894 -38.45884 -35.55714 -35.11750 -34.80733 -33.15670 -31.65057 -30.58570 -30.05566 -29.09252 -28.32928 -25.37654 -24.38600 -24.01054 -22.52747 -22.09994 -21.08722 -20.55853 -20.06491 -18.40101 -18.15210 -17.85956 -16.73200 -16.52016 -16.12361 -15.40629 -14.95168 -14.66966 -14.44833 -14.15157 -13.95029 -13.71472 -13.57155 -13.54409 -13.39959 -13.24063 -13.15935 -12.84258 -12.73869 -12.31028 -11.96733 -11.81981 -11.71778 -11.65539 -11.39896 -11.20607 -11.01041 -10.77635 -10.49333 -10.42869 -10.36181 -10.15004 -9.99323 -9.74497 -9.69748 -9.66843 -9.41726 -8.57685 -8.48179 -6.68004 -5.81969 -3.25589 1.02881 1.63347 2.19641 2.52258 3.06386 3.35641 3.43017 3.43761 3.82183 3.92847 4.08919 4.46769 4.49256 4.57180 4.77628 4.82572 4.89709 4.93093 5.06247 5.07069 5.13948 5.16020 5.30544 5.35976 5.42425 5.43746 5.48936 5.58546 5.60319 5.71242 5.78103 5.86822 5.98733 6.01121 6.02173 6.23657 6.37556 6.45077 6.56433 6.58497 6.65821 6.78142 6.91520 7.31416 7.33791 7.63636 7.76739 7.94578 7.99130 8.43312 9.18664 9.82046 10.38351 11.25840 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017507 B = 0.002709 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.002780 B =10334.118701 C =10955.948925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.049 4.049 3 C 0.026 3.974 4 O 0.097 5.903 5 N -0.357 5.357 6 C 0.055 3.945 7 C -0.079 4.079 8 C -0.251 4.251 9 C 0.602 3.398 10 O -0.526 6.526 11 N -0.683 5.683 12 C 0.066 3.934 13 H 0.134 0.866 14 C -0.180 4.180 15 C -0.094 4.094 16 C -0.098 4.098 17 C 0.150 3.850 18 N -0.589 5.589 19 C -0.255 4.255 20 H 0.065 0.935 21 C 0.004 3.996 22 N -0.900 5.900 23 Si 0.901 3.099 24 H -0.287 1.287 25 H -0.279 1.279 26 H -0.291 1.291 27 C 0.173 3.827 28 C -0.105 4.105 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.403 0.597 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.019 0.981 43 H 0.054 0.946 44 H 0.254 0.746 45 H 0.090 0.910 46 H 0.018 0.982 47 H 0.052 0.948 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.826 12.135 -14.965 20.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.087 4.087 3 C -0.038 4.038 4 O 0.036 5.964 5 N -0.063 5.063 6 C -0.107 4.107 7 C -0.136 4.136 8 C -0.258 4.258 9 C 0.386 3.614 10 O -0.402 6.402 11 N -0.332 5.332 12 C -0.039 4.039 13 H 0.152 0.848 14 C -0.219 4.219 15 C -0.096 4.096 16 C -0.137 4.137 17 C 0.023 3.977 18 N -0.311 5.311 19 C -0.385 4.385 20 H 0.082 0.918 21 C -0.195 4.195 22 N -0.545 5.545 23 Si 0.731 3.269 24 H -0.214 1.214 25 H -0.204 1.204 26 H -0.218 1.218 27 C 0.047 3.953 28 C -0.145 4.145 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.238 0.762 38 H 0.119 0.881 39 H 0.110 0.890 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.037 0.963 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.108 0.892 46 H 0.036 0.964 47 H 0.071 0.929 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.288 12.965 -15.433 21.433 hybrid contribution 0.348 -1.148 0.605 1.343 sum -6.939 11.817 -14.828 20.191 Atomic orbital electron populations 1.21792 0.92698 1.03268 1.03157 1.20304 0.97406 0.85580 1.05417 1.24731 0.97867 0.96132 0.85062 1.84530 1.61385 1.17578 1.32956 1.73621 1.17405 0.98752 1.16554 1.24749 1.00278 0.96671 0.89023 1.20242 1.02262 0.91324 0.99777 1.21918 1.13227 0.95560 0.95106 1.16797 0.83645 0.77133 0.83780 1.90817 1.28382 1.53332 1.67622 1.45383 1.15563 1.61425 1.10790 1.21987 0.97490 1.04704 0.79746 0.84812 1.23542 0.99145 0.99046 1.00137 1.21977 0.98703 0.89603 0.99267 1.21643 0.97447 0.98416 0.96238 1.20829 0.92306 0.93386 0.91145 1.43959 1.49016 1.05892 1.32260 1.19191 1.42505 0.84474 0.92301 0.91775 1.25047 1.00834 0.98041 0.95597 1.70029 1.53445 1.34204 0.96777 0.86309 0.77763 0.85725 0.77081 1.21409 1.20433 1.21777 1.20662 0.87666 0.96352 0.90624 1.21811 0.99818 0.97137 0.95724 0.91975 0.90740 0.91542 0.88516 0.88100 0.89535 0.89890 0.89659 0.76162 0.88149 0.88975 0.93686 0.91708 0.96298 0.92721 0.93596 0.89167 0.96386 0.92909 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.89 37.16 0.37 -0.80 16 2 C -0.05 -0.38 6.38 -27.88 -0.18 -0.56 16 3 C 0.03 0.26 6.80 -34.63 -0.24 0.03 16 4 O 0.10 1.08 11.06 18.66 0.21 1.28 16 5 N -0.36 -4.29 12.01 34.78 0.42 -3.87 16 6 C 0.06 0.62 7.59 -79.76 -0.61 0.01 16 7 C -0.08 -0.66 10.49 36.01 0.38 -0.28 16 8 C -0.25 -2.94 6.24 -102.89 -0.64 -3.58 16 9 C 0.60 7.95 7.60 -12.53 -0.10 7.85 16 10 O -0.53 -8.71 16.67 5.28 0.09 -8.63 16 11 N -0.68 -8.19 5.34 -54.96 -0.29 -8.49 16 12 C 0.07 0.90 6.14 -68.00 -0.42 0.48 16 13 H 0.13 1.97 7.40 -51.93 -0.38 1.59 16 14 C -0.18 -2.44 9.87 -26.78 -0.26 -2.70 16 15 C -0.09 -1.45 1.94 -154.49 -0.30 -1.75 16 16 C -0.10 -1.53 5.37 -26.46 -0.14 -1.67 16 17 C 0.15 2.95 6.52 -3.67 -0.02 2.93 16 18 N -0.59 -14.10 2.94 -172.56 -0.51 -14.61 16 19 C -0.26 -6.78 9.54 -15.06 -0.14 -6.92 16 20 H 0.06 1.68 7.89 -52.49 -0.41 1.26 16 21 C 0.00 0.10 4.89 -17.43 -0.09 0.01 16 22 N -0.90 -25.52 11.23 55.49 0.62 -24.90 16 23 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.17 3.93 5.37 -3.92 -0.02 3.91 16 28 C -0.11 -1.91 5.81 -26.71 -0.16 -2.06 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.10 0.82 8.11 -51.93 -0.42 0.40 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.40 4.20 7.10 -40.82 -0.29 3.91 16 38 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.04 0.57 6.75 -51.93 -0.35 0.22 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 1.06 7.92 -51.93 -0.41 0.65 16 44 H 0.25 6.97 8.31 -40.82 -0.34 6.64 16 45 H 0.09 2.33 5.94 -51.93 -0.31 2.02 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.05 0.86 8.10 -51.92 -0.42 0.44 16 48 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 393.98 15.07 5.94 5.94 Total: -1.00 -31.20 393.98 -8.75 -39.95 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.63 Total: 2.26 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -2.56 Total: -5.11 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.24 Total: -51.87 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: 0.29 Total: -7.34 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.20 -8.75 -39.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016968793.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.402 kcal (2) G-P(sol) polarization free energy of solvation -31.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds