Wall clock time and date at job start Tue Mar 31 2020 17:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47134 * 2 1 4 4 O 1.33487 * 126.83266 * 270.10534 * 3 2 1 5 5 N 1.20663 * 113.15869 * 180.30070 * 4 3 2 6 6 C 1.30012 * 112.29836 * 359.75706 * 5 4 3 7 7 C 1.50703 * 127.33434 * 180.02562 * 6 5 4 8 8 C 1.37363 * 126.82410 * 90.00168 * 3 2 1 9 9 C 1.47399 * 128.56931 * 359.97438 * 8 3 2 10 10 O 1.21600 * 120.00210 * 269.70403 * 9 8 3 11 11 N 1.34781 * 119.99630 * 89.70400 * 9 8 3 12 12 C 1.46499 * 119.99611 * 180.02562 * 11 9 8 13 13 H 1.08997 * 115.56887 * 9.28931 * 12 11 9 14 14 C 1.53040 * 117.49670 * 223.58139 * 12 11 9 15 15 C 1.52822 * 117.49888 * 154.99881 * 12 11 9 16 16 C 1.53178 * 117.71571 * 359.85967 * 15 12 11 17 17 C 1.53354 * 108.76913 * 158.87857 * 16 15 12 18 18 N 1.46839 * 108.81141 * 51.30384 * 17 16 15 19 19 C 1.36943 * 120.37901 * 123.11274 * 18 17 16 20 20 H 1.07999 * 119.99950 * 331.22649 * 19 18 17 21 21 C 1.38811 * 120.00018 * 151.22549 * 19 18 17 22 22 N 1.31614 * 120.00086 * 342.28730 * 21 19 18 23 23 Si 1.86795 * 119.99850 * 162.29129 * 21 19 18 24 24 H 1.48497 * 109.47278 * 269.99729 * 23 21 19 25 25 H 1.48506 * 109.47387 * 29.99734 * 23 21 19 26 26 H 1.48499 * 109.47414 * 150.00053 * 23 21 19 27 27 C 1.46844 * 119.24249 * 303.37737 * 18 17 16 28 28 C 1.52871 * 109.07030 * 56.58865 * 27 18 17 29 29 H 1.08992 * 109.46875 * 59.99794 * 1 2 3 30 30 H 1.08993 * 109.46809 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46788 * 299.99968 * 1 2 3 32 32 H 1.09002 * 109.47449 * 240.00384 * 2 1 3 33 33 H 1.08999 * 109.47166 * 119.99955 * 2 1 3 34 34 H 1.09006 * 109.46982 * 270.00384 * 7 6 5 35 35 H 1.09004 * 109.46926 * 30.00081 * 7 6 5 36 36 H 1.08995 * 109.47600 * 149.99912 * 7 6 5 37 37 H 0.97000 * 119.99862 * 359.97438 * 11 9 8 38 38 H 1.09003 * 117.50143 * 145.04778 * 14 12 11 39 39 H 1.08991 * 117.53174 * 359.97438 * 14 12 11 40 40 H 1.09003 * 109.59144 * 39.08914 * 16 15 12 41 41 H 1.09007 * 109.58622 * 278.65860 * 16 15 12 42 42 H 1.08997 * 109.57212 * 291.50879 * 17 16 15 43 43 H 1.08995 * 109.58051 * 171.10607 * 17 16 15 44 44 H 0.96999 * 120.00333 * 180.02562 * 22 21 19 45 45 H 1.09000 * 109.57737 * 176.41847 * 27 18 17 46 46 H 1.08990 * 109.58155 * 296.82534 * 27 18 17 47 47 H 1.09009 * 109.66214 * 189.04410 * 28 27 18 48 48 H 1.09001 * 109.45030 * 68.65491 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2972 2.1760 -1.0684 5 7 2.6940 3.2792 -0.7832 6 6 2.7610 3.4623 0.5022 7 6 3.2082 4.7062 1.2261 8 6 2.3068 2.1970 1.0996 9 6 2.1825 1.8468 2.5259 10 8 1.1402 2.0586 3.1154 11 7 3.2240 1.2916 3.1767 12 6 3.1003 0.9430 4.5942 13 1 2.0954 1.0146 5.0103 14 6 4.2725 1.2943 5.5133 15 6 4.0092 -0.1621 5.1310 16 6 4.9796 -0.8260 4.1493 17 6 6.1153 -1.4810 4.9449 18 7 5.5319 -2.3319 5.9898 19 6 5.8457 -3.6633 6.0539 20 1 6.1101 -4.1997 5.1546 21 6 5.8238 -4.3236 7.2748 22 7 5.8498 -3.6348 8.3960 23 14 5.7575 -6.1896 7.3264 24 1 4.3408 -6.6344 7.3419 25 1 6.4367 -6.7425 6.1270 26 1 6.4423 -6.6757 8.5511 27 6 4.6037 -1.7400 6.9617 28 6 3.4422 -1.0891 6.2106 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.2833 4.6589 1.3996 35 1 2.9761 5.5823 0.6205 36 1 2.6887 4.7771 2.1817 37 1 4.0553 1.1223 2.7063 38 1 4.0386 1.5970 6.5340 39 1 5.1359 1.7844 5.0636 40 1 5.3913 -0.0733 3.4769 41 1 4.4526 -1.5858 3.5720 42 1 6.7317 -0.7085 5.4047 43 1 6.7257 -2.0889 4.2773 44 1 5.8349 -4.0961 9.2491 45 1 4.2196 -2.5186 7.6208 46 1 5.1238 -0.9842 7.5501 47 1 2.8337 -0.5110 6.9061 48 1 2.8323 -1.8630 5.7443 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016968793.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:50 Heat of formation + Delta-G solvation = 41.749705 kcal Electronic energy + Delta-G solvation = -29121.618311 eV Core-core repulsion = 25180.119553 eV Total energy + Delta-G solvation = -3941.498758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.97204 -41.16914 -39.73832 -37.14512 -35.86926 -35.60643 -34.49035 -33.33449 -31.71891 -31.30212 -29.99398 -29.74612 -26.37118 -26.12326 -24.71303 -24.05013 -23.23866 -22.50815 -21.70366 -20.89869 -19.81668 -19.19626 -18.78328 -18.23757 -17.58479 -17.30709 -16.74080 -16.22917 -15.86476 -15.64391 -15.28940 -15.25380 -15.00491 -14.80061 -14.68700 -14.34989 -14.22716 -14.14679 -13.87313 -13.80213 -13.49882 -13.29454 -13.10678 -12.88719 -12.62835 -12.59013 -12.53441 -12.51810 -12.24278 -12.01636 -11.88941 -11.77045 -11.51390 -11.38757 -11.22729 -10.99035 -10.73140 -10.51755 -10.45498 -9.75911 -8.60882 -7.84683 -5.30816 0.21103 0.79677 1.17772 1.47856 1.49809 1.57807 1.65861 2.12792 2.52963 2.90600 3.04582 3.17138 3.30239 3.61081 3.65356 3.79882 3.82482 3.86966 3.98316 4.08072 4.13717 4.18994 4.24584 4.45602 4.54066 4.56457 4.59893 4.66654 4.74997 4.75745 4.85944 4.88927 4.92969 4.94881 4.99475 5.04388 5.06203 5.10393 5.17218 5.26135 5.32153 5.39954 5.41287 5.56976 5.67827 5.80039 6.33462 6.42971 6.98970 7.12690 7.18430 7.90948 8.41295 9.20393 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017507 B = 0.002709 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.002780 B =10334.118701 C =10955.948925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.050 4.050 3 C 0.039 3.961 4 O 0.093 5.907 5 N -0.375 5.375 6 C 0.054 3.946 7 C -0.080 4.080 8 C -0.273 4.273 9 C 0.611 3.389 10 O -0.562 6.562 11 N -0.670 5.670 12 C 0.085 3.915 13 H 0.125 0.875 14 C -0.168 4.168 15 C -0.111 4.111 16 C -0.083 4.083 17 C 0.145 3.855 18 N -0.608 5.608 19 C -0.262 4.262 20 H 0.066 0.934 21 C -0.049 4.049 22 N -0.933 5.933 23 Si 0.963 3.037 24 H -0.287 1.287 25 H -0.268 1.268 26 H -0.297 1.297 27 C 0.181 3.819 28 C -0.094 4.094 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.124 0.876 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.414 0.586 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.017 0.983 43 H 0.054 0.946 44 H 0.249 0.751 45 H 0.052 0.948 46 H -0.002 1.002 47 H 0.068 0.932 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.754 12.760 -17.029 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.088 4.088 3 C -0.025 4.025 4 O 0.034 5.966 5 N -0.084 5.084 6 C -0.108 4.108 7 C -0.137 4.137 8 C -0.281 4.281 9 C 0.397 3.603 10 O -0.441 6.441 11 N -0.320 5.320 12 C -0.020 4.020 13 H 0.143 0.857 14 C -0.206 4.206 15 C -0.113 4.113 16 C -0.122 4.122 17 C 0.020 3.980 18 N -0.331 5.331 19 C -0.392 4.392 20 H 0.083 0.917 21 C -0.245 4.245 22 N -0.579 5.579 23 Si 0.791 3.209 24 H -0.213 1.213 25 H -0.193 1.193 26 H -0.224 1.224 27 C 0.055 3.945 28 C -0.133 4.133 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.142 0.858 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.251 0.749 38 H 0.121 0.879 39 H 0.128 0.872 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.035 0.965 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.071 0.929 46 H 0.016 0.984 47 H 0.086 0.914 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.196 13.594 -17.549 23.336 hybrid contribution 0.339 -1.315 1.219 1.825 sum -6.857 12.279 -16.330 21.551 Atomic orbital electron populations 1.21775 0.92588 1.04084 1.02215 1.20483 0.97357 0.84260 1.06709 1.25158 0.96138 0.96711 0.84454 1.84516 1.61434 1.17530 1.33117 1.73616 1.18506 0.99264 1.16975 1.25179 0.99480 0.97240 0.88886 1.20371 1.03262 0.90569 0.99472 1.21824 1.15231 0.96482 0.94531 1.16879 0.83007 0.76294 0.84126 1.90805 1.29830 1.54901 1.68564 1.45251 1.15815 1.60793 1.10111 1.21717 0.97009 1.02738 0.80583 0.85737 1.23634 0.99534 0.96917 1.00502 1.21805 1.00056 0.90169 0.99267 1.21458 0.95825 0.98978 0.95982 1.20993 0.93771 0.92905 0.90369 1.44223 1.49833 1.05818 1.33244 1.19514 1.41371 0.86049 0.92269 0.91674 1.25761 1.01429 1.01930 0.95385 1.70176 1.55169 1.35544 0.97013 0.85336 0.77514 0.81060 0.76968 1.21343 1.19261 1.22361 1.20418 0.88767 0.94758 0.90539 1.21555 0.97869 0.97437 0.96440 0.91394 0.89082 0.93964 0.85827 0.88158 0.87779 0.88862 0.89885 0.74870 0.87880 0.87154 0.89972 0.92120 0.96535 0.92766 0.94180 0.92922 0.98354 0.91392 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.89 71.98 0.71 -1.33 16 2 C -0.05 -0.67 6.38 29.85 0.19 -0.48 16 3 C 0.04 0.73 6.80 25.48 0.17 0.91 16 4 O 0.09 1.91 11.06 77.03 0.85 2.76 16 5 N -0.38 -8.41 12.01 -44.78 -0.54 -8.95 16 6 C 0.05 1.13 7.59 45.16 0.34 1.47 16 7 C -0.08 -1.17 10.49 71.24 0.75 -0.42 16 8 C -0.27 -5.93 6.24 -18.74 -0.12 -6.05 16 9 C 0.61 15.08 7.60 86.65 0.66 15.74 16 10 O -0.56 -18.13 16.67 -4.03 -0.07 -18.20 16 11 N -0.67 -14.31 5.34 -446.05 -2.38 -16.69 16 12 C 0.09 2.12 6.14 44.95 0.28 2.39 16 13 H 0.12 3.46 7.40 -2.39 -0.02 3.44 16 14 C -0.17 -4.08 9.87 30.56 0.30 -3.78 16 15 C -0.11 -3.23 1.94 -52.17 -0.10 -3.33 16 16 C -0.08 -2.40 5.37 30.77 0.17 -2.23 16 17 C 0.15 5.54 6.52 86.43 0.56 6.10 16 18 N -0.61 -29.33 2.94 -699.85 -2.06 -31.39 16 19 C -0.26 -14.03 9.54 84.03 0.80 -13.23 16 20 H 0.07 3.40 7.89 -2.91 -0.02 3.38 16 21 C -0.05 -2.72 4.89 84.86 0.41 -2.31 16 22 N -0.93 -54.50 11.23 21.65 0.24 -54.25 16 23 Si 0.96 44.18 29.59 68.60 2.03 46.21 16 24 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 27 C 0.18 8.43 5.37 86.27 0.46 8.90 16 28 C -0.09 -3.36 5.81 30.61 0.18 -3.19 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.04 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.10 1.39 8.11 -2.39 -0.02 1.37 16 34 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.41 7.15 7.10 -92.71 -0.66 6.49 16 38 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.08 1.76 6.75 -2.39 -0.02 1.74 16 41 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.05 2.04 7.92 -2.39 -0.02 2.02 16 44 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 45 H 0.05 2.84 5.94 -2.39 -0.01 2.82 16 46 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 47 H 0.07 2.19 8.10 -2.38 -0.02 2.17 16 48 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -68.99 393.98 4.16 -64.84 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.31 Total: 16.50 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 5.77 Total: -0.82 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -4.74 Total: -111.28 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.78 Total: -15.44 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -68.99 4.16 -64.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016968793.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.586 kcal (2) G-P(sol) polarization free energy of solvation -68.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds