Wall clock time and date at job start Tue Mar 31 2020 18:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.46610 * 2 1 4 4 N 1.29938 * 125.37519 * 90.32016 * 3 2 1 5 5 C 1.36067 * 108.47182 * 180.11024 * 4 3 2 6 6 C 1.47426 * 126.44661 * 179.85578 * 5 4 3 7 7 O 1.21608 * 120.00116 * 179.69163 * 6 5 4 8 8 N 1.34772 * 119.99914 * 359.68974 * 6 5 4 9 9 C 1.46497 * 119.99996 * 179.97438 * 8 6 5 10 10 C 1.53152 * 109.43751 * 205.09046 * 9 8 6 11 11 C 1.53699 * 108.88077 * 186.08640 * 10 9 8 12 12 H 1.08995 * 112.10360 * 188.25405 * 11 10 9 13 13 C 1.54607 * 107.82957 * 312.23072 * 11 10 9 14 14 C 1.54312 * 104.75131 * 88.66658 * 13 11 10 15 15 C 1.54604 * 104.75174 * 359.97438 * 14 13 11 16 16 H 1.09004 * 112.19260 * 146.79855 * 15 14 13 17 17 C 1.53146 * 109.39809 * 84.89228 * 9 8 6 18 18 N 1.48297 * 104.26126 * 25.14155 * 15 14 13 19 19 C 1.36937 * 128.21330 * 138.42888 * 18 15 14 20 20 H 1.07993 * 119.99875 * 195.07567 * 19 18 15 21 21 C 1.38810 * 119.99529 * 15.07498 * 19 18 15 22 22 N 1.31612 * 120.00477 * 9.27961 * 21 19 18 23 23 Si 1.86810 * 119.99707 * 189.28158 * 21 19 18 24 24 H 1.48494 * 109.46890 * 90.00100 * 23 21 19 25 25 H 1.48505 * 109.46864 * 210.00255 * 23 21 19 26 26 H 1.48502 * 109.46681 * 330.00060 * 23 21 19 27 27 C 1.36089 * 107.10635 * 359.59601 * 5 4 3 28 28 C 1.50705 * 126.52884 * 180.27586 * 27 5 4 29 29 O 1.34049 * 125.37886 * 269.97307 * 3 2 1 30 30 H 1.08999 * 109.47029 * 299.99586 * 1 2 3 31 31 H 1.08997 * 109.47579 * 59.99845 * 1 2 3 32 32 H 1.09004 * 109.46964 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46596 * 239.99817 * 2 1 3 34 34 H 1.09000 * 109.47078 * 120.00227 * 2 1 3 35 35 H 0.97006 * 120.00010 * 0.02562 * 8 6 5 36 36 H 1.09001 * 109.43486 * 324.99917 * 9 8 6 37 37 H 1.09003 * 109.56938 * 305.90733 * 10 9 8 38 38 H 1.08997 * 109.56780 * 66.26364 * 10 9 8 39 39 H 1.09000 * 110.37740 * 207.48227 * 13 11 10 40 40 H 1.09000 * 110.38223 * 329.73395 * 13 11 10 41 41 H 1.09008 * 110.38248 * 118.81489 * 14 13 11 42 42 H 1.08992 * 110.38372 * 241.17546 * 14 13 11 43 43 H 1.09000 * 109.56740 * 293.75360 * 17 9 8 44 44 H 1.08999 * 109.57108 * 54.11552 * 17 9 8 45 45 H 0.97007 * 119.99972 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.47160 * 89.99821 * 28 27 5 47 47 H 1.09000 * 109.47119 * 210.00113 * 28 27 5 48 48 H 1.09004 * 109.46914 * 329.99919 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2885 2.1281 1.0595 5 6 2.7179 3.3571 0.6639 6 6 3.1131 4.4719 1.5439 7 8 3.4861 5.5243 1.0619 8 7 3.0609 4.3248 2.8825 9 6 3.4541 5.4324 3.7570 10 6 3.9068 4.8771 5.1106 11 6 4.1699 6.0511 6.0671 12 1 4.6318 5.7253 6.9990 13 6 5.0373 7.0879 5.3166 14 6 4.0227 8.0083 4.6061 15 6 2.6378 7.4408 4.9935 16 1 1.8828 8.2220 5.0821 17 6 2.2604 6.3707 3.9575 18 7 2.8759 6.7429 6.2801 19 6 2.0873 6.7378 7.3996 20 1 2.4884 6.3929 8.3411 21 6 0.7723 7.1761 7.3242 22 7 0.2270 7.4227 6.1520 23 14 -0.2233 7.4159 8.8866 24 1 -0.0489 8.8071 9.3759 25 1 -1.6594 7.1678 8.6013 26 1 0.2471 6.4635 9.9243 27 6 2.7196 3.3617 -0.6970 28 6 3.1256 4.5060 -1.5897 29 8 2.2914 2.1524 -1.0930 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.7636 3.4853 3.2670 36 1 4.2752 5.9831 3.2980 37 1 3.1257 4.2383 5.5229 38 1 4.8222 4.2998 4.9807 39 1 5.6400 7.6601 6.0218 40 1 5.6771 6.5909 4.5874 41 1 4.1263 9.0335 4.9617 42 1 4.1620 7.9644 3.5260 43 1 2.0105 6.8507 3.0113 44 1 1.4040 5.8003 4.3170 45 1 -0.6921 7.7286 6.0994 46 1 4.1920 4.4382 -1.8049 47 1 2.5630 4.4568 -2.5220 48 1 2.9155 5.4505 -1.0879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021406257.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:49 Heat of formation + Delta-G solvation = 3.266597 kcal Electronic energy + Delta-G solvation = -29649.773897 eV Core-core repulsion = 25706.606387 eV Total energy + Delta-G solvation = -3943.167511 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.53217 -39.88211 -38.47688 -35.20580 -34.42477 -34.23292 -32.58329 -31.74778 -30.21955 -29.78833 -29.14465 -27.21501 -25.00971 -24.34311 -23.27280 -23.08120 -21.80729 -20.84471 -20.13566 -19.27409 -18.65379 -17.78414 -17.07177 -16.71009 -16.08417 -15.79167 -14.96950 -14.81224 -14.62241 -14.42273 -14.10260 -13.96099 -13.64985 -13.38054 -12.98253 -12.84070 -12.81553 -12.76270 -12.56624 -12.08713 -12.05708 -11.90481 -11.54608 -11.46103 -11.35736 -11.26831 -11.01044 -10.83940 -10.77475 -10.63152 -10.59868 -10.07858 -9.81172 -9.73971 -9.58922 -9.37025 -9.28990 -8.88776 -8.67685 -8.31887 -6.79786 -5.73194 -3.08463 1.05388 1.98100 2.33920 3.37668 3.41070 3.46196 3.47620 3.51230 3.78695 4.47477 4.49245 4.71653 4.78412 4.81886 5.01298 5.11839 5.28044 5.32968 5.36157 5.42730 5.43332 5.55607 5.58247 5.75947 5.78303 5.81314 5.83557 5.93400 5.94423 6.00505 6.04050 6.06998 6.24413 6.34588 6.49661 6.56902 6.71905 6.73266 6.78999 6.90981 6.99752 7.09143 7.22343 7.40252 7.60993 7.64261 7.81045 7.93517 8.27497 8.49494 9.16674 9.78982 10.58075 11.38873 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013924 B = 0.003199 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.485115 B = 8751.181642 C = 9785.580220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.024 4.024 3 C 0.189 3.811 4 N -0.454 5.454 5 C -0.069 4.069 6 C 0.598 3.402 7 O -0.540 6.540 8 N -0.701 5.701 9 C 0.146 3.854 10 C -0.135 4.135 11 C 0.152 3.848 12 H 0.070 0.930 13 C -0.132 4.132 14 C -0.145 4.145 15 C 0.183 3.817 16 H 0.110 0.890 17 C -0.120 4.120 18 N -0.584 5.584 19 C -0.224 4.224 20 H 0.075 0.925 21 C -0.004 4.004 22 N -0.910 5.910 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.033 3.967 28 C -0.074 4.074 29 O -0.199 6.199 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.403 0.597 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.043 0.957 44 H 0.074 0.926 45 H 0.252 0.748 46 H 0.090 0.910 47 H 0.077 0.923 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.166 -12.193 -14.641 19.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.062 4.062 3 C -0.020 4.020 4 N -0.184 5.184 5 C -0.189 4.189 6 C 0.383 3.617 7 O -0.419 6.419 8 N -0.350 5.350 9 C 0.043 3.957 10 C -0.175 4.175 11 C 0.043 3.957 12 H 0.088 0.912 13 C -0.171 4.171 14 C -0.184 4.184 15 C 0.075 3.925 16 H 0.128 0.872 17 C -0.160 4.160 18 N -0.305 5.305 19 C -0.352 4.352 20 H 0.093 0.907 21 C -0.201 4.201 22 N -0.556 5.556 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.023 4.023 28 C -0.130 4.130 29 O -0.087 6.087 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.126 0.874 35 H 0.237 0.763 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.093 0.907 45 H 0.063 0.937 46 H 0.108 0.892 47 H 0.096 0.904 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.107 -11.595 -14.216 19.042 hybrid contribution -0.735 -0.279 0.227 0.818 sum 4.372 -11.874 -13.988 18.862 Atomic orbital electron populations 1.21804 0.92964 1.03023 1.03217 1.20084 0.96967 0.83923 1.05224 1.26204 1.00534 0.96913 0.78346 1.70745 1.15093 1.02666 1.29888 1.21694 1.10387 0.94452 0.92392 1.16689 0.77929 0.84879 0.82213 1.90752 1.48649 1.27224 1.75248 1.46173 1.65654 1.18049 1.05101 1.21416 0.98566 0.86701 0.88997 1.22511 0.99909 0.99726 0.95401 1.21493 0.88855 0.90629 0.94740 0.91199 1.22648 0.97563 0.98075 0.98775 1.22813 0.98324 0.98580 0.98685 1.21477 0.93312 0.93770 0.83924 0.87199 1.22387 0.96941 0.97987 0.98693 1.45203 1.19901 1.53194 1.12157 1.18984 0.91394 1.38477 0.86364 0.90742 1.24829 0.96148 1.02507 0.96641 1.69883 1.13419 1.50792 1.21509 0.86179 0.79421 0.77948 0.82535 1.21667 1.21840 1.20723 1.23733 0.98405 0.85555 0.94636 1.20584 1.02249 0.92642 0.97572 1.84295 1.63983 1.22412 1.37979 0.91468 0.92170 0.90823 0.88904 0.87430 0.76275 0.89806 0.91551 0.93338 0.92745 0.92674 0.92908 0.92410 0.93853 0.90736 0.93740 0.89188 0.90378 0.86727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 37.16 0.37 -0.67 16 2 C -0.02 -0.18 6.56 -27.88 -0.18 -0.36 16 3 C 0.19 2.26 7.56 -13.08 -0.10 2.16 16 4 N -0.45 -6.69 11.06 -7.65 -0.08 -6.77 16 5 C -0.07 -1.09 6.99 -83.02 -0.58 -1.67 16 6 C 0.60 10.66 7.78 -12.52 -0.10 10.56 16 7 O -0.54 -10.46 14.46 5.27 0.08 -10.39 16 8 N -0.70 -12.43 5.07 -54.73 -0.28 -12.70 16 9 C 0.15 2.79 2.10 -67.78 -0.14 2.65 16 10 C -0.14 -2.51 5.09 -26.29 -0.13 -2.64 16 11 C 0.15 3.06 4.32 -65.75 -0.28 2.78 16 12 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 13 C -0.13 -2.39 5.98 -25.20 -0.15 -2.54 16 14 C -0.14 -2.88 5.98 -25.20 -0.15 -3.03 16 15 C 0.18 4.29 3.13 -65.76 -0.21 4.09 16 16 H 0.11 2.96 6.34 -51.93 -0.33 2.63 16 17 C -0.12 -2.67 5.11 -26.32 -0.13 -2.81 16 18 N -0.58 -14.30 2.82 -152.81 -0.43 -14.73 16 19 C -0.22 -6.04 10.38 -15.06 -0.16 -6.20 16 20 H 0.07 1.96 7.85 -52.49 -0.41 1.55 16 21 C 0.00 -0.11 5.42 -17.43 -0.09 -0.21 16 22 N -0.91 -25.89 10.60 55.49 0.59 -25.31 16 23 Si 0.91 21.77 29.56 -169.99 -5.03 16.74 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 C 0.03 0.44 7.44 -35.08 -0.26 0.18 16 28 C -0.07 -0.78 9.88 36.01 0.36 -0.43 16 29 O -0.20 -2.48 10.73 6.51 0.07 -2.41 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.40 6.75 8.33 -40.82 -0.34 6.41 16 36 H 0.08 1.64 4.96 -51.93 -0.26 1.38 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.91 7.05 -51.93 -0.37 0.54 16 41 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 42 H 0.06 1.10 7.04 -51.93 -0.37 0.73 16 43 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.07 1.91 8.01 -51.93 -0.42 1.49 16 45 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.11 1.40 6.48 -51.93 -0.34 1.07 16 LS Contribution 379.44 15.07 5.72 5.72 Total: -1.00 -31.27 379.44 -8.77 -40.03 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -7.45 Total: 7.94 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -1.95 Total: 1.86 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -0.20 Total: -59.51 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.15 Total: -12.79 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.27 -8.77 -40.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021406257.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.301 kcal (2) G-P(sol) polarization free energy of solvation -31.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds