Wall clock time and date at job start Tue Mar 31 2020 18:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47259 * 2 1 4 4 N 1.29933 * 125.37949 * 89.71913 * 3 2 1 5 5 C 1.36069 * 108.47429 * 179.84135 * 4 3 2 6 6 C 1.47418 * 126.44671 * 180.16634 * 5 4 3 7 7 O 1.21614 * 120.00020 * 187.77610 * 6 5 4 8 8 N 1.34783 * 119.99871 * 7.77168 * 6 5 4 9 9 C 1.46947 * 120.84567 * 6.89269 * 8 6 5 10 10 C 1.53613 * 108.76756 * 125.93327 * 9 8 6 11 11 C 1.53116 * 109.40875 * 54.30817 * 10 9 8 12 12 C 1.52854 * 109.34189 * 299.21079 * 11 10 9 13 13 H 1.09002 * 109.25796 * 302.49914 * 12 11 10 14 14 C 1.52769 * 110.20271 * 183.23686 * 12 11 10 15 15 N 1.46895 * 109.19016 * 292.67579 * 14 12 11 16 16 C 1.36934 * 120.76979 * 126.62881 * 15 14 12 17 17 H 1.08005 * 119.99452 * 218.10984 * 16 15 14 18 18 C 1.38813 * 120.00754 * 38.11574 * 16 15 14 19 19 N 1.31623 * 119.99411 * 6.43488 * 18 16 15 20 20 Si 1.86794 * 120.00304 * 186.43644 * 18 16 15 21 21 H 1.48505 * 109.47194 * 89.99890 * 20 18 16 22 22 H 1.48499 * 109.47267 * 210.00101 * 20 18 16 23 23 H 1.48501 * 109.47270 * 329.99872 * 20 18 16 24 24 C 1.46970 * 118.44875 * 306.65089 * 15 14 12 25 25 C 1.53153 * 109.19678 * 53.89258 * 24 15 14 26 26 C 1.47310 * 120.84256 * 187.17047 * 8 6 5 27 27 H 1.09000 * 110.07394 * 355.08892 * 26 8 6 28 28 C 1.36086 * 107.10364 * 0.41711 * 5 4 3 29 29 O 1.34051 * 125.37382 * 270.02193 * 3 2 1 30 30 H 1.09001 * 109.46775 * 299.99854 * 1 2 3 31 31 H 1.09000 * 109.46968 * 60.00256 * 1 2 3 32 32 H 1.08993 * 109.46990 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47154 * 239.99793 * 2 1 3 34 34 H 1.09000 * 109.46968 * 119.99744 * 2 1 3 35 35 H 1.09000 * 109.54036 * 245.83915 * 9 8 6 36 36 H 1.08998 * 109.54191 * 6.11273 * 9 8 6 37 37 H 1.09000 * 109.61582 * 294.25443 * 10 9 8 38 38 H 1.09000 * 109.39050 * 174.22057 * 10 9 8 39 39 H 1.09002 * 109.49222 * 179.25549 * 11 10 9 40 40 H 1.08995 * 109.49759 * 59.17596 * 11 10 9 41 41 H 1.09006 * 109.51902 * 52.59183 * 14 12 11 42 42 H 1.09002 * 109.52205 * 172.70385 * 14 12 11 43 43 H 0.97002 * 119.99795 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.60981 * 174.05670 * 24 15 14 45 45 H 1.09002 * 109.61258 * 294.39228 * 24 15 14 46 46 H 1.09003 * 110.08135 * 185.36798 * 25 24 15 47 47 H 1.09007 * 108.85321 * 65.43084 * 25 24 15 48 48 H 1.08002 * 126.52561 * 179.71755 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2783 2.1318 1.0594 5 6 2.7175 3.3574 0.6637 6 6 3.1121 4.4724 1.5437 7 8 3.3531 5.5657 1.0689 8 7 3.2058 4.2800 2.8744 9 6 3.0667 2.9364 3.4531 10 6 4.2983 2.6429 4.3228 11 6 4.4720 3.7622 5.3532 12 6 4.6832 5.0905 4.6269 13 1 5.5505 5.0082 3.9719 14 6 4.9388 6.2087 5.6360 15 7 3.7164 6.4438 6.4161 16 6 3.7440 6.4225 7.7850 17 1 2.9202 5.9919 8.3350 18 6 4.8305 6.9544 8.4658 19 7 5.7736 7.5915 7.8046 20 14 4.9542 6.7659 10.3201 21 1 5.6819 5.5123 10.6428 22 1 5.6890 7.9249 10.8875 23 1 3.5899 6.7108 10.9041 24 6 2.4632 6.7018 5.6929 25 6 2.2181 5.5703 4.6904 26 6 3.4442 5.4121 3.7862 27 1 3.6072 6.3254 3.2141 28 6 2.7185 3.3621 -0.6971 29 8 2.2907 2.1526 -1.0930 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.1658 2.8947 4.0654 36 1 2.9996 2.1998 2.6525 37 1 5.1863 2.5878 3.6931 38 1 4.1591 1.6928 4.8385 39 1 5.3380 3.5486 5.9797 40 1 3.5793 3.8257 5.9753 41 1 5.7478 5.9169 6.3058 42 1 5.2151 7.1207 5.1069 43 1 6.5327 7.9635 8.2803 44 1 1.6358 6.7505 6.4008 45 1 2.5396 7.6462 5.1540 46 1 1.3432 5.7941 4.0799 47 1 2.0498 4.6436 5.2392 48 1 3.0078 4.1827 -1.3369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021567236.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:50 Heat of formation + Delta-G solvation = -8.096678 kcal Electronic energy + Delta-G solvation = -30066.299694 eV Core-core repulsion = 26122.639434 eV Total energy + Delta-G solvation = -3943.660259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.52341 -41.57479 -39.46844 -37.13154 -36.11507 -34.90098 -34.20884 -33.95410 -31.85512 -31.21339 -30.45961 -27.39456 -26.76653 -25.28251 -25.09768 -23.73363 -23.48930 -22.81083 -22.22924 -20.71140 -19.54548 -18.57799 -18.46265 -17.88272 -17.74676 -17.07662 -16.89509 -16.29420 -15.93963 -15.79123 -15.49598 -15.26454 -15.16114 -15.04857 -14.60989 -14.48292 -14.15965 -14.10334 -13.84153 -13.60933 -13.52700 -13.20207 -12.85550 -12.72061 -12.67525 -12.59794 -12.42544 -12.30255 -12.03857 -12.01477 -11.96949 -11.79528 -11.63586 -11.42470 -11.39672 -11.12885 -10.66364 -10.54514 -10.12544 -9.57072 -8.53867 -7.87056 -5.45522 0.04493 0.90679 1.47650 1.48037 1.54823 1.57574 1.87037 2.14042 2.50160 2.78103 3.30597 3.47241 3.64096 3.76521 3.79174 3.93241 4.04825 4.11159 4.21483 4.24338 4.28893 4.35131 4.36451 4.44965 4.54015 4.57201 4.60022 4.71366 4.76455 4.88503 4.93846 4.95504 5.02994 5.03432 5.07565 5.09477 5.11954 5.19789 5.24041 5.31039 5.38387 5.45711 5.58230 5.63377 5.66805 5.68871 6.30132 6.44687 6.50537 6.98822 7.16735 7.81305 8.41852 9.19457 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024069 B = 0.002919 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.019810 B = 9589.172584 C =10024.721573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.027 4.027 3 C 0.207 3.793 4 N -0.475 5.475 5 C -0.093 4.093 6 C 0.591 3.409 7 O -0.580 6.580 8 N -0.586 5.586 9 C 0.086 3.914 10 C -0.123 4.123 11 C -0.096 4.096 12 C -0.104 4.104 13 H 0.052 0.948 14 C 0.195 3.805 15 N -0.600 5.600 16 C -0.261 4.261 17 H 0.065 0.935 18 C -0.042 4.042 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.282 1.282 22 H -0.296 1.296 23 H -0.266 1.266 24 C 0.147 3.853 25 C -0.123 4.123 26 C 0.161 3.839 27 H 0.068 0.932 28 C 0.028 3.972 29 O -0.192 6.192 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.066 0.934 36 H 0.144 0.856 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.049 0.951 40 H 0.062 0.938 41 H 0.053 0.947 42 H -0.013 1.013 43 H 0.250 0.750 44 H 0.064 0.936 45 H 0.006 0.994 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.282 -19.618 -17.843 28.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.065 4.065 3 C -0.002 4.002 4 N -0.205 5.205 5 C -0.211 4.211 6 C 0.379 3.621 7 O -0.461 6.461 8 N -0.316 5.316 9 C -0.036 4.036 10 C -0.161 4.161 11 C -0.133 4.133 12 C -0.125 4.125 13 H 0.071 0.929 14 C 0.068 3.932 15 N -0.323 5.323 16 C -0.392 4.392 17 H 0.083 0.917 18 C -0.238 4.238 19 N -0.580 5.580 20 Si 0.796 3.204 21 H -0.209 1.209 22 H -0.223 1.223 23 H -0.191 1.191 24 C 0.020 3.980 25 C -0.163 4.163 26 C 0.059 3.941 27 H 0.086 0.914 28 C -0.047 4.047 29 O -0.078 6.078 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.084 0.916 36 H 0.161 0.839 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.005 0.995 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.024 0.976 46 H 0.085 0.915 47 H 0.090 0.910 48 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -9.117 -19.198 -17.394 27.463 hybrid contribution 0.763 1.279 0.540 1.585 sum -8.354 -17.918 -16.854 25.979 Atomic orbital electron populations 1.21789 0.92422 1.04304 1.02172 1.20456 0.97185 0.81506 1.07348 1.27416 0.97135 0.97901 0.77761 1.70510 1.17646 1.02538 1.29810 1.21539 1.11662 0.94377 0.93539 1.17251 0.76883 0.86009 0.81908 1.90779 1.53295 1.26553 1.75486 1.48309 1.68414 1.09961 1.04871 1.22765 0.97602 0.83152 1.00042 1.21990 0.97963 0.98917 0.97208 1.21334 1.01718 0.93001 0.97288 1.21799 0.96123 0.97743 0.96858 0.92936 1.20349 0.89645 0.92060 0.91114 1.44061 1.04064 1.82267 1.01898 1.19372 1.05394 1.31939 0.82451 0.91738 1.26113 0.98682 0.96893 1.02086 1.70139 1.12042 1.39713 1.36139 0.85263 0.77995 0.76727 0.80394 1.20900 1.22296 1.19102 1.20946 0.89412 0.94165 0.93431 1.22196 0.96265 1.00673 0.97157 1.21065 0.95387 0.88438 0.89251 0.91424 1.25651 0.96930 0.87082 0.95000 1.84434 1.63243 1.22198 1.37899 0.93136 0.92481 0.88528 0.86167 0.86069 0.91589 0.83928 0.92481 0.88638 0.93266 0.91928 0.92900 0.99452 0.94075 0.91793 0.97601 0.91523 0.90959 0.73231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.90 71.98 0.71 -0.27 16 2 C -0.03 -0.19 6.56 29.85 0.20 0.01 16 3 C 0.21 3.33 7.56 88.39 0.67 4.00 16 4 N -0.47 -10.50 7.86 -293.04 -2.30 -12.81 16 5 C -0.09 -2.42 6.67 40.41 0.27 -2.15 16 6 C 0.59 19.88 7.68 86.66 0.67 20.54 16 7 O -0.58 -22.99 16.37 -4.07 -0.07 -23.05 16 8 N -0.59 -19.46 2.65 -796.88 -2.11 -21.58 16 9 C 0.09 2.35 5.66 86.50 0.49 2.84 16 10 C -0.12 -3.36 6.10 30.84 0.19 -3.18 16 11 C -0.10 -3.42 4.86 30.58 0.15 -3.27 16 12 C -0.10 -4.25 2.45 -10.87 -0.03 -4.27 16 13 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 14 C 0.19 9.84 4.60 86.23 0.40 10.23 16 15 N -0.60 -30.67 2.61 -699.94 -1.83 -32.50 16 16 C -0.26 -14.33 9.52 84.03 0.80 -13.53 16 17 H 0.07 3.43 7.84 -2.91 -0.02 3.41 16 18 C -0.04 -2.33 5.11 84.86 0.43 -1.90 16 19 N -0.94 -56.26 11.35 21.65 0.25 -56.01 16 20 Si 0.97 44.87 29.56 68.60 2.03 46.90 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 C 0.15 6.43 6.49 86.34 0.56 6.99 16 25 C -0.12 -4.55 5.07 30.70 0.16 -4.40 16 26 C 0.16 6.22 2.62 44.94 0.12 6.33 16 27 H 0.07 2.96 7.06 -2.39 -0.02 2.95 16 28 C 0.03 0.54 11.95 67.32 0.80 1.35 16 29 O -0.19 -3.24 10.73 0.35 0.00 -3.24 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.10 0.23 8.14 -2.39 -0.02 0.22 16 33 H 0.12 0.28 8.14 -2.38 -0.02 0.27 16 34 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 1.78 7.25 -2.39 -0.02 1.76 16 36 H 0.14 3.56 4.13 -15.80 -0.07 3.50 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.06 2.40 6.22 -2.39 -0.01 2.38 16 41 H 0.05 2.96 6.53 -2.38 -0.02 2.95 16 42 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 43 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 44 H 0.06 2.68 7.94 -2.39 -0.02 2.66 16 45 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 46 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.07 2.59 5.41 -2.38 -0.01 2.57 16 48 H 0.25 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -71.84 371.67 3.46 -68.37 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.91 Total: 14.59 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 6.58 Total: 19.32 kcal Atomic # 7 Polarization: -116.90 SS G_CDS: -5.99 Total: -122.90 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.06 Total: -26.29 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -71.84 3.46 -68.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021567236.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.278 kcal (2) G-P(sol) polarization free energy of solvation -71.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds