Wall clock time and date at job start Tue Mar 31 2020 17:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50707 * 109.47042 * 2 1 4 4 C 1.35313 * 126.66757 * 90.27844 * 3 2 1 5 5 C 1.42271 * 103.91855 * 180.13111 * 4 3 2 6 6 C 1.48334 * 126.93820 * 179.91595 * 5 4 3 7 7 O 1.21494 * 119.99569 * 6.70264 * 6 5 4 8 8 N 1.34773 * 120.00039 * 186.71441 * 6 5 4 9 9 C 1.47026 * 120.81652 * 6.27995 * 8 6 5 10 10 C 1.53135 * 109.11284 * 126.00054 * 9 8 6 11 11 C 1.53118 * 109.48465 * 53.94868 * 10 9 8 12 12 C 1.52861 * 109.34143 * 299.35400 * 11 10 9 13 13 H 1.08999 * 108.59706 * 302.87781 * 12 11 10 14 14 C 1.52774 * 110.20508 * 183.23499 * 12 11 10 15 15 N 1.46890 * 109.23601 * 292.69589 * 14 12 11 16 16 C 1.36932 * 120.77404 * 126.60275 * 15 14 12 17 17 H 1.08002 * 119.99533 * 207.54227 * 16 15 14 18 18 C 1.38814 * 120.00486 * 27.53925 * 16 15 14 19 19 N 1.31624 * 119.99593 * 17.08598 * 18 16 15 20 20 Si 1.86794 * 120.00351 * 197.08702 * 18 16 15 21 21 H 1.48493 * 109.47200 * 89.99825 * 20 18 16 22 22 H 1.48500 * 109.47297 * 210.00140 * 20 18 16 23 23 H 1.48506 * 109.47039 * 330.00148 * 20 18 16 24 24 C 1.46973 * 118.44764 * 306.61660 * 15 14 12 25 25 C 1.53096 * 108.61969 * 54.31744 * 24 15 14 26 26 C 1.47304 * 120.84342 * 186.12104 * 8 6 5 27 27 H 1.09002 * 110.07975 * 355.80476 * 26 8 6 28 28 N 1.30985 * 106.12587 * 359.64759 * 5 4 3 29 29 O 1.20904 * 111.44025 * 0.23064 * 28 5 4 30 30 H 1.09005 * 109.46515 * 60.00850 * 1 2 3 31 31 H 1.08994 * 109.46802 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47396 * 300.00300 * 1 2 3 33 33 H 1.08996 * 109.47396 * 239.99700 * 2 1 3 34 34 H 1.09005 * 109.46515 * 119.99150 * 2 1 3 35 35 H 1.07991 * 128.03964 * 0.02562 * 4 3 2 36 36 H 1.08995 * 109.59824 * 6.04788 * 9 8 6 37 37 H 1.09004 * 109.47381 * 245.87579 * 9 8 6 38 38 H 1.09007 * 109.46650 * 293.94765 * 10 9 8 39 39 H 1.09002 * 109.47158 * 173.95844 * 10 9 8 40 40 H 1.08991 * 109.49647 * 179.39250 * 11 10 9 41 41 H 1.09004 * 109.51090 * 59.31942 * 11 10 9 42 42 H 1.09000 * 109.51494 * 172.74680 * 14 12 11 43 43 H 1.09003 * 109.51420 * 52.63463 * 14 12 11 44 44 H 0.96999 * 119.99683 * 179.97438 * 19 18 16 45 45 H 1.09002 * 109.61150 * 174.05652 * 24 15 14 46 46 H 1.08995 * 109.61692 * 294.40064 * 24 15 14 47 47 H 1.09002 * 109.45377 * 64.69425 * 25 24 15 48 48 H 1.09009 * 109.44673 * 184.62048 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3067 2.1810 1.0854 5 6 2.7385 3.4199 0.5352 6 6 3.1659 4.6270 1.2839 7 8 3.2863 4.5815 2.4920 8 7 3.4204 5.7743 0.6240 9 6 3.1498 5.8906 -0.8164 10 6 2.2539 7.1081 -1.0616 11 6 2.8948 8.3486 -0.4332 12 6 3.0421 8.1344 1.0731 13 1 2.0588 7.9195 1.4914 14 6 3.6061 9.3919 1.7323 15 7 4.9909 9.5930 1.2854 16 6 5.3854 10.7861 0.7416 17 1 6.2026 10.8140 0.0360 18 6 4.7350 11.9598 1.0971 19 7 3.9856 11.9953 2.1786 20 14 4.9233 13.4889 0.0408 21 1 3.8614 13.5075 -0.9969 22 1 4.8026 14.6981 0.8943 23 1 6.2558 13.4766 -0.6147 24 6 5.9430 8.4834 1.4354 25 6 5.3603 7.2435 0.7521 26 6 3.9732 6.9440 1.3284 27 1 4.0485 6.7369 2.3959 28 7 2.6881 3.2775 -0.7659 29 8 2.2987 2.1755 -1.0751 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 2.2169 1.9106 2.1270 36 1 2.6457 4.9903 -1.1676 37 1 4.0899 6.0154 -1.3539 38 1 1.2763 6.9364 -0.6109 39 1 2.1372 7.2632 -2.1342 40 1 2.2626 9.2173 -0.6169 41 1 3.8775 8.5139 -0.8748 42 1 3.5862 9.2752 2.8158 43 1 3.0028 10.2540 1.4477 44 1 3.5314 12.8155 2.4272 45 1 6.8905 8.7484 0.9662 46 1 6.1035 8.2795 2.4940 47 1 5.2768 7.4250 -0.3194 48 1 6.0172 6.3911 0.9255 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021715874.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:13 Heat of formation + Delta-G solvation = 54.278619 kcal Electronic energy + Delta-G solvation = -29962.393897 eV Core-core repulsion = 26021.438433 eV Total energy + Delta-G solvation = -3940.955463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.27930 -40.31380 -38.08677 -35.64002 -35.24740 -34.09051 -32.61515 -32.42567 -30.57950 -30.16839 -29.42854 -25.85866 -25.58949 -24.51391 -24.01238 -22.66615 -22.25924 -21.81613 -21.18077 -19.18786 -18.00661 -17.90960 -17.47160 -16.96717 -16.59271 -15.73940 -15.10553 -15.00887 -14.97248 -14.65598 -14.32243 -13.98563 -13.77702 -13.56244 -13.51475 -13.10785 -12.99061 -12.79549 -12.62068 -12.41269 -12.23221 -12.18855 -11.81164 -11.56174 -11.44969 -11.07404 -10.82168 -10.71817 -10.65145 -10.55459 -10.40365 -10.19635 -10.05684 -10.00038 -9.89444 -9.67963 -9.61549 -9.40836 -8.50636 -8.30020 -6.68358 -5.79029 -3.21026 0.94824 1.48782 2.63591 2.94143 3.16328 3.37476 3.44691 3.45625 3.80946 4.14223 4.49103 4.54538 4.69535 4.71405 4.79992 4.96725 5.13991 5.21316 5.25013 5.28760 5.33881 5.41038 5.44994 5.49413 5.49894 5.58191 5.63012 5.72454 5.78918 5.87007 5.95978 6.09785 6.16028 6.22998 6.32446 6.42674 6.46928 6.52641 6.69097 6.77769 6.88976 6.94731 7.04533 7.31474 7.48828 7.65083 7.79406 7.82077 8.15938 8.43997 9.20497 9.83685 10.41096 11.29656 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.029558 B = 0.002751 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.063205 B =10176.467311 C =10450.250645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.042 4.042 3 C -0.032 4.032 4 C -0.182 4.182 5 C -0.013 4.013 6 C 0.590 3.410 7 O -0.530 6.530 8 N -0.587 5.587 9 C 0.088 3.912 10 C -0.133 4.133 11 C -0.105 4.105 12 C -0.114 4.114 13 H 0.057 0.943 14 C 0.178 3.822 15 N -0.588 5.588 16 C -0.249 4.249 17 H 0.066 0.934 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.901 3.099 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.279 1.279 24 C 0.148 3.852 25 C -0.141 4.141 26 C 0.155 3.845 27 H 0.096 0.904 28 N -0.328 5.328 29 O 0.111 5.889 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.179 0.821 36 H 0.108 0.892 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.020 0.980 43 H 0.094 0.906 44 H 0.254 0.746 45 H 0.058 0.942 46 H 0.021 0.979 47 H 0.066 0.934 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.604 -23.181 -6.550 24.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.080 4.080 3 C -0.095 4.095 4 C -0.205 4.205 5 C -0.171 4.171 6 C 0.375 3.625 7 O -0.405 6.405 8 N -0.318 5.318 9 C -0.035 4.035 10 C -0.171 4.171 11 C -0.142 4.142 12 C -0.135 4.135 13 H 0.075 0.925 14 C 0.051 3.949 15 N -0.311 5.311 16 C -0.379 4.379 17 H 0.084 0.916 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.731 3.269 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.205 1.205 24 C 0.020 3.980 25 C -0.181 4.181 26 C 0.053 3.947 27 H 0.114 0.886 28 N -0.033 5.033 29 O 0.040 5.960 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.197 0.803 36 H 0.126 0.874 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.038 0.962 43 H 0.112 0.888 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.039 0.961 47 H 0.085 0.915 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.301 -22.184 -6.826 24.050 hybrid contribution -0.092 0.558 0.189 0.597 sum -6.393 -21.626 -6.636 23.507 Atomic orbital electron populations 1.21815 0.93342 1.02835 1.03044 1.20154 0.96746 0.86131 1.04961 1.24498 1.02326 0.97128 0.85554 1.22427 1.04900 0.91656 1.01484 1.23659 1.05538 0.97963 0.89987 1.17008 0.78072 0.81216 0.86162 1.90782 1.53208 1.83814 1.12720 1.48462 1.61194 1.11925 1.10246 1.22319 1.00312 1.00643 0.80183 1.21961 0.98732 0.95609 1.00824 1.21465 1.01675 0.95769 0.95306 1.22050 0.97715 0.96976 0.96758 0.92496 1.20714 0.86024 0.93426 0.94716 1.44034 1.04434 1.10342 1.72264 1.19158 1.16999 0.83701 1.17996 0.91643 1.25026 1.00933 0.97353 0.96281 1.70028 1.34963 1.26996 1.22691 0.86307 0.77916 0.82817 0.79837 1.21488 1.21818 1.20475 1.20856 0.93131 0.87269 0.96699 1.22425 0.94994 0.99244 1.01426 1.21515 0.93300 0.82828 0.97006 0.88560 1.74095 1.15013 0.98640 1.15553 1.84794 1.60005 1.17489 1.33705 0.91950 0.91144 0.91932 0.89121 0.88282 0.80340 0.87439 0.91310 0.92392 0.91175 0.91970 0.90509 0.96161 0.88840 0.93616 0.92394 0.96134 0.91497 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.90 37.16 0.37 -0.28 16 2 C -0.04 -0.19 6.50 -27.88 -0.18 -0.37 16 3 C -0.03 -0.28 6.73 -35.35 -0.24 -0.51 16 4 C -0.18 -1.99 10.93 -39.08 -0.43 -2.42 16 5 C -0.01 -0.18 6.88 -82.53 -0.57 -0.75 16 6 C 0.59 10.10 7.72 -12.11 -0.09 10.00 16 7 O -0.53 -10.43 16.42 5.37 0.09 -10.34 16 8 N -0.59 -9.83 2.66 -165.67 -0.44 -10.27 16 9 C 0.09 1.29 5.66 -3.69 -0.02 1.27 16 10 C -0.13 -1.95 6.08 -26.60 -0.16 -2.11 16 11 C -0.10 -1.86 4.86 -26.74 -0.13 -1.99 16 12 C -0.11 -2.22 2.45 -90.67 -0.22 -2.44 16 13 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 14 C 0.18 4.20 4.70 -3.95 -0.02 4.18 16 15 N -0.59 -14.39 2.64 -172.62 -0.46 -14.84 16 16 C -0.25 -6.66 9.60 -15.06 -0.14 -6.81 16 17 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 18 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 19 N -0.90 -25.95 11.17 55.49 0.62 -25.33 16 20 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 C 0.15 3.11 6.51 -3.73 -0.02 3.08 16 25 C -0.14 -2.57 5.02 -26.60 -0.13 -2.70 16 26 C 0.15 2.88 2.66 -67.27 -0.18 2.70 16 27 H 0.10 1.97 7.06 -51.93 -0.37 1.60 16 28 N -0.33 -4.26 8.66 33.29 0.29 -3.98 16 29 O 0.11 1.19 11.18 17.23 0.19 1.38 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.18 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.11 1.50 4.18 -56.86 -0.24 1.26 16 37 H 0.07 1.00 7.26 -51.93 -0.38 0.62 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.08 1.48 6.15 -51.93 -0.32 1.16 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.09 2.46 6.03 -51.93 -0.31 2.15 16 44 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.06 1.18 7.94 -51.93 -0.41 0.77 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.07 1.21 5.33 -51.93 -0.28 0.94 16 48 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 LS Contribution 370.68 15.07 5.59 5.59 Total: -1.00 -30.99 370.68 -8.76 -39.75 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -7.35 Total: 0.71 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -2.26 Total: 0.84 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.01 Total: -54.41 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.28 Total: -8.96 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.99 -8.76 -39.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021715874.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.033 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds