Wall clock time and date at job start Tue Mar 31 2020 17:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47416 * 2 1 4 4 C 1.35318 * 126.66599 * 90.31467 * 3 2 1 5 5 C 1.42271 * 103.91909 * 180.08594 * 4 3 2 6 6 C 1.48331 * 126.93859 * 179.89242 * 5 4 3 7 7 O 1.21499 * 119.99889 * 353.98416 * 6 5 4 8 8 N 1.34772 * 120.00187 * 173.98857 * 6 5 4 9 9 C 1.46948 * 120.84678 * 4.80596 * 8 6 5 10 10 C 1.53138 * 109.02269 * 234.04553 * 9 8 6 11 11 C 1.53234 * 108.82104 * 305.51909 * 10 9 8 12 12 C 1.52854 * 109.28412 * 61.85789 * 11 10 9 13 13 H 1.08998 * 109.25286 * 55.91809 * 12 11 10 14 14 C 1.52767 * 110.21304 * 175.97326 * 12 11 10 15 15 N 1.46894 * 109.19537 * 66.55564 * 14 12 11 16 16 C 1.36940 * 120.76780 * 233.31882 * 15 14 12 17 17 H 1.07999 * 119.99732 * 148.98474 * 16 15 14 18 18 C 1.38812 * 120.00347 * 328.97569 * 16 15 14 19 19 N 1.31619 * 119.99820 * 350.20671 * 18 16 15 20 20 Si 1.86796 * 120.00097 * 170.20832 * 18 16 15 21 21 H 1.48500 * 109.47218 * 270.00030 * 20 18 16 22 22 H 1.48505 * 109.47120 * 30.00461 * 20 18 16 23 23 H 1.48498 * 109.47027 * 149.99963 * 20 18 16 24 24 C 1.46971 * 118.45764 * 53.59201 * 15 14 12 25 25 C 1.52024 * 108.54272 * 305.77178 * 24 15 14 26 26 C 1.47306 * 120.84396 * 184.83148 * 8 6 5 27 27 H 1.08999 * 110.07040 * 4.90030 * 26 8 6 28 28 N 1.30983 * 106.12351 * 359.62678 * 5 4 3 29 29 O 1.20907 * 111.44301 * 0.24231 * 28 5 4 30 30 H 1.09005 * 109.47097 * 59.99789 * 1 2 3 31 31 H 1.08998 * 109.47046 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46908 * 300.00181 * 1 2 3 33 33 H 1.09001 * 109.46908 * 239.99819 * 2 1 3 34 34 H 1.08998 * 109.46875 * 119.99875 * 2 1 3 35 35 H 1.07994 * 128.04049 * 359.95743 * 4 3 2 36 36 H 1.09004 * 109.54245 * 353.91347 * 9 8 6 37 37 H 1.08998 * 109.54544 * 114.17764 * 9 8 6 38 38 H 1.08996 * 109.47180 * 65.92559 * 10 9 8 39 39 H 1.09005 * 109.46751 * 185.92293 * 10 9 8 40 40 H 1.08996 * 110.16700 * 301.51499 * 11 10 9 41 41 H 1.09005 * 108.87767 * 181.40890 * 11 10 9 42 42 H 1.08999 * 109.51698 * 306.64013 * 14 12 11 43 43 H 1.09003 * 109.51811 * 186.46788 * 14 12 11 44 44 H 0.97002 * 120.00068 * 179.97438 * 19 18 16 45 45 H 1.08996 * 109.61280 * 65.16587 * 24 15 14 46 46 H 1.09001 * 109.61545 * 185.69182 * 24 15 14 47 47 H 1.08990 * 108.58202 * 295.01230 * 25 24 15 48 48 H 1.09000 * 109.56090 * 175.51462 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3074 2.1807 1.0854 5 6 2.7400 3.4193 0.5353 6 6 3.1679 4.6262 1.2840 7 8 3.0679 4.6574 2.4945 8 7 3.6674 5.6883 0.6216 9 6 3.6997 5.7131 -0.8473 10 6 5.1305 6.0022 -1.3103 11 6 5.6150 7.2932 -0.6422 12 6 5.6293 7.1022 0.8743 13 1 6.2453 6.2378 1.1219 14 6 6.2035 8.3422 1.5571 15 7 5.2880 9.4729 1.3543 16 6 5.7394 10.6544 0.8294 17 1 5.0799 11.2671 0.2327 18 6 7.0445 11.0647 1.0645 19 7 7.7873 10.4251 1.9428 20 14 7.7464 12.5247 0.1345 21 1 8.3843 12.0520 -1.1204 22 1 6.6532 13.4748 -0.1933 23 1 8.7597 13.2081 0.9779 24 6 3.8775 9.3087 1.7335 25 6 3.3290 8.0759 1.0332 26 6 4.1955 6.8536 1.3517 27 1 4.1870 6.6585 2.4241 28 7 2.6897 3.2769 -0.7658 29 8 2.2996 2.1751 -1.0750 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2172 1.9104 2.1271 36 1 3.3790 4.7463 -1.2354 37 1 3.0330 6.4938 -1.2136 38 1 5.7774 5.1702 -1.0322 39 1 5.1437 6.1265 -2.3932 40 1 4.9529 8.1203 -0.8984 41 1 6.6241 7.5134 -0.9905 42 1 7.1757 8.5788 1.1247 43 1 6.3155 8.1513 2.6245 44 1 8.6994 10.7115 2.1068 45 1 3.8020 9.1750 2.8126 46 1 3.3123 10.1902 1.4310 47 1 3.3356 8.2553 -0.0418 48 1 2.3069 7.8924 1.3645 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021715877.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:20 Heat of formation + Delta-G solvation = 55.821209 kcal Electronic energy + Delta-G solvation = -29957.851610 eV Core-core repulsion = 26016.963039 eV Total energy + Delta-G solvation = -3940.888572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.27723 -40.31855 -38.09574 -35.65667 -35.24552 -34.09550 -32.57939 -32.43841 -30.59957 -30.15417 -29.43263 -25.85934 -25.57566 -24.50942 -24.00054 -22.65526 -22.24808 -21.80045 -21.17901 -19.19380 -18.01842 -17.88278 -17.54009 -16.96520 -16.55742 -15.71892 -15.08153 -15.02214 -14.93729 -14.69564 -14.31652 -14.01245 -13.78545 -13.57652 -13.45806 -13.09838 -13.02019 -12.76849 -12.63529 -12.39995 -12.21764 -12.17177 -11.78242 -11.57090 -11.45364 -10.99691 -10.80203 -10.69418 -10.62003 -10.57496 -10.36790 -10.18971 -10.03961 -9.97727 -9.83972 -9.71567 -9.60706 -9.40690 -8.50829 -8.29400 -6.61822 -5.77831 -3.25967 0.94789 1.49021 2.61959 2.94555 3.18361 3.37045 3.43866 3.44940 3.80060 4.14697 4.48406 4.54416 4.69429 4.70539 4.79074 4.96319 5.15917 5.22474 5.25877 5.32208 5.33888 5.43833 5.46669 5.49843 5.50580 5.60455 5.63246 5.72403 5.81344 5.89867 6.00551 6.13451 6.19106 6.25763 6.36777 6.44637 6.49435 6.54892 6.71371 6.80081 6.91136 6.96812 7.07000 7.34345 7.50264 7.69773 7.79082 7.83529 8.16877 8.47759 9.22418 9.83426 10.42483 11.30119 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.031308 B = 0.002723 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.134722 B =10280.808209 C =10590.875025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.042 4.042 3 C -0.030 4.030 4 C -0.183 4.183 5 C -0.010 4.010 6 C 0.590 3.410 7 O -0.530 6.530 8 N -0.585 5.585 9 C 0.077 3.923 10 C -0.131 4.131 11 C -0.105 4.105 12 C -0.115 4.115 13 H 0.056 0.944 14 C 0.179 3.821 15 N -0.589 5.589 16 C -0.249 4.249 17 H 0.064 0.936 18 C 0.004 3.996 19 N -0.905 5.905 20 Si 0.904 3.096 21 H -0.288 1.288 22 H -0.279 1.279 23 H -0.291 1.291 24 C 0.147 3.853 25 C -0.140 4.140 26 C 0.154 3.846 27 H 0.094 0.906 28 N -0.329 5.329 29 O 0.109 5.891 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.179 0.821 36 H 0.119 0.881 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.020 0.980 44 H 0.254 0.746 45 H 0.019 0.981 46 H 0.058 0.942 47 H 0.065 0.935 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.035 -20.826 -6.291 24.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.080 4.080 3 C -0.094 4.094 4 C -0.205 4.205 5 C -0.169 4.169 6 C 0.375 3.625 7 O -0.406 6.406 8 N -0.316 5.316 9 C -0.046 4.046 10 C -0.169 4.169 11 C -0.142 4.142 12 C -0.136 4.136 13 H 0.075 0.925 14 C 0.052 3.948 15 N -0.311 5.311 16 C -0.378 4.378 17 H 0.082 0.918 18 C -0.194 4.194 19 N -0.550 5.550 20 Si 0.734 3.266 21 H -0.215 1.215 22 H -0.205 1.205 23 H -0.217 1.217 24 C 0.020 3.980 25 C -0.180 4.180 26 C 0.053 3.947 27 H 0.113 0.887 28 N -0.034 5.034 29 O 0.039 5.961 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.197 0.803 36 H 0.136 0.864 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.038 0.962 44 H 0.064 0.936 45 H 0.037 0.963 46 H 0.077 0.923 47 H 0.084 0.916 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.618 -19.894 -6.587 23.962 hybrid contribution 0.405 0.469 0.245 0.666 sum -11.214 -19.426 -6.341 23.309 Atomic orbital electron populations 1.21813 0.93341 1.02830 1.03037 1.20156 0.96749 0.86133 1.04981 1.24496 1.02218 0.97095 0.85546 1.22424 1.04909 0.91662 1.01492 1.23670 1.05236 0.98011 0.89949 1.17019 0.78296 0.80970 0.86239 1.90783 1.55653 1.81337 1.12784 1.48416 1.58693 1.16800 1.07705 1.22533 0.98173 1.04816 0.79083 1.21965 0.95628 0.99226 1.00128 1.21497 1.01871 0.96100 0.94735 1.22083 0.94237 1.00910 0.96399 0.92541 1.20739 0.95052 0.82809 0.96195 1.44014 1.03239 1.10890 1.73005 1.19149 0.96536 0.97650 1.24505 0.91797 1.25162 0.98652 0.98154 0.97469 1.69957 1.08924 1.41929 1.34152 0.86269 0.78763 0.82475 0.79104 1.21469 1.20462 1.21728 1.20680 0.87317 0.94228 0.95755 1.22197 0.97663 0.96056 1.02042 1.21442 0.93750 0.82856 0.96664 0.88747 1.73909 1.15119 0.98930 1.15467 1.84797 1.59845 1.17630 1.33785 0.91959 0.91141 0.91929 0.89112 0.88270 0.80321 0.86440 0.91425 0.92326 0.91276 0.90398 0.92155 0.88612 0.96237 0.93584 0.96295 0.92317 0.91636 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.89 37.16 0.37 -0.27 16 2 C -0.04 -0.19 6.50 -27.88 -0.18 -0.37 16 3 C -0.03 -0.26 6.73 -35.35 -0.24 -0.50 16 4 C -0.18 -2.00 10.93 -39.07 -0.43 -2.42 16 5 C -0.01 -0.14 6.95 -82.53 -0.57 -0.71 16 6 C 0.59 10.12 7.73 -12.11 -0.09 10.03 16 7 O -0.53 -10.45 16.43 5.37 0.09 -10.36 16 8 N -0.58 -9.85 2.67 -165.80 -0.44 -10.30 16 9 C 0.08 1.13 5.85 -3.73 -0.02 1.11 16 10 C -0.13 -1.94 6.12 -26.54 -0.16 -2.10 16 11 C -0.10 -1.87 4.82 -26.69 -0.13 -2.00 16 12 C -0.12 -2.26 2.49 -90.74 -0.23 -2.48 16 13 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 14 C 0.18 4.24 4.65 -3.95 -0.02 4.22 16 15 N -0.59 -14.45 2.60 -173.27 -0.45 -14.90 16 16 C -0.25 -6.66 9.60 -15.06 -0.14 -6.80 16 17 H 0.06 1.69 7.85 -52.49 -0.41 1.28 16 18 C 0.00 0.11 5.08 -17.43 -0.09 0.03 16 19 N -0.91 -25.99 10.98 55.49 0.61 -25.38 16 20 Si 0.90 21.54 29.56 -169.99 -5.03 16.51 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 C 0.15 3.12 6.50 -4.28 -0.03 3.10 16 25 C -0.14 -2.57 4.96 -27.14 -0.13 -2.71 16 26 C 0.15 2.89 2.62 -67.33 -0.18 2.71 16 27 H 0.09 1.95 7.08 -51.93 -0.37 1.58 16 28 N -0.33 -4.27 8.52 33.29 0.28 -3.98 16 29 O 0.11 1.16 11.18 17.24 0.19 1.36 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.18 1.69 8.06 -52.49 -0.42 1.26 16 36 H 0.12 1.65 3.77 -73.01 -0.28 1.37 16 37 H 0.07 0.98 7.32 -51.93 -0.38 0.60 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.51 6.05 -51.93 -0.31 1.20 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.10 2.53 6.06 -51.93 -0.31 2.22 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 1.21 7.94 -51.93 -0.41 0.80 16 47 H 0.07 1.20 5.36 -51.93 -0.28 0.92 16 48 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 370.18 15.07 5.58 5.58 Total: -1.00 -30.95 370.18 -8.83 -39.78 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -7.39 Total: 0.88 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -2.28 Total: 0.81 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: 0.00 Total: -54.56 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.28 Total: -9.00 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.95 -8.83 -39.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021715877.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.600 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds