Wall clock time and date at job start Tue Mar 31 2020 17:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47416 * 2 1 4 4 C 1.35318 * 126.66599 * 90.31467 * 3 2 1 5 5 C 1.42271 * 103.91909 * 180.08594 * 4 3 2 6 6 C 1.48331 * 126.93859 * 179.89242 * 5 4 3 7 7 O 1.21499 * 119.99889 * 353.98416 * 6 5 4 8 8 N 1.34772 * 120.00187 * 173.98857 * 6 5 4 9 9 C 1.46948 * 120.84678 * 4.80596 * 8 6 5 10 10 C 1.53138 * 109.02269 * 234.04553 * 9 8 6 11 11 C 1.53234 * 108.82104 * 305.51909 * 10 9 8 12 12 C 1.52854 * 109.28412 * 61.85789 * 11 10 9 13 13 H 1.08998 * 109.25286 * 55.91809 * 12 11 10 14 14 C 1.52767 * 110.21304 * 175.97326 * 12 11 10 15 15 N 1.46894 * 109.19537 * 66.55564 * 14 12 11 16 16 C 1.36940 * 120.76780 * 233.31882 * 15 14 12 17 17 H 1.07999 * 119.99732 * 148.98474 * 16 15 14 18 18 C 1.38812 * 120.00347 * 328.97569 * 16 15 14 19 19 N 1.31619 * 119.99820 * 350.20671 * 18 16 15 20 20 Si 1.86796 * 120.00097 * 170.20832 * 18 16 15 21 21 H 1.48500 * 109.47218 * 270.00030 * 20 18 16 22 22 H 1.48505 * 109.47120 * 30.00461 * 20 18 16 23 23 H 1.48498 * 109.47027 * 149.99963 * 20 18 16 24 24 C 1.46971 * 118.45764 * 53.59201 * 15 14 12 25 25 C 1.52024 * 108.54272 * 305.77178 * 24 15 14 26 26 C 1.47306 * 120.84396 * 184.83148 * 8 6 5 27 27 H 1.08999 * 110.07040 * 4.90030 * 26 8 6 28 28 N 1.30983 * 106.12351 * 359.62678 * 5 4 3 29 29 O 1.20907 * 111.44301 * 0.24231 * 28 5 4 30 30 H 1.09005 * 109.47097 * 59.99789 * 1 2 3 31 31 H 1.08998 * 109.47046 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46908 * 300.00181 * 1 2 3 33 33 H 1.09001 * 109.46908 * 239.99819 * 2 1 3 34 34 H 1.08998 * 109.46875 * 119.99875 * 2 1 3 35 35 H 1.07994 * 128.04049 * 359.95743 * 4 3 2 36 36 H 1.09004 * 109.54245 * 353.91347 * 9 8 6 37 37 H 1.08998 * 109.54544 * 114.17764 * 9 8 6 38 38 H 1.08996 * 109.47180 * 65.92559 * 10 9 8 39 39 H 1.09005 * 109.46751 * 185.92293 * 10 9 8 40 40 H 1.08996 * 110.16700 * 301.51499 * 11 10 9 41 41 H 1.09005 * 108.87767 * 181.40890 * 11 10 9 42 42 H 1.08999 * 109.51698 * 306.64013 * 14 12 11 43 43 H 1.09003 * 109.51811 * 186.46788 * 14 12 11 44 44 H 0.97002 * 120.00068 * 179.97438 * 19 18 16 45 45 H 1.08996 * 109.61280 * 65.16587 * 24 15 14 46 46 H 1.09001 * 109.61545 * 185.69182 * 24 15 14 47 47 H 1.08990 * 108.58202 * 295.01230 * 25 24 15 48 48 H 1.09000 * 109.56090 * 175.51462 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3074 2.1807 1.0854 5 6 2.7400 3.4193 0.5353 6 6 3.1679 4.6262 1.2840 7 8 3.0679 4.6574 2.4945 8 7 3.6674 5.6883 0.6216 9 6 3.6997 5.7131 -0.8473 10 6 5.1305 6.0022 -1.3103 11 6 5.6150 7.2932 -0.6422 12 6 5.6293 7.1022 0.8743 13 1 6.2453 6.2378 1.1219 14 6 6.2035 8.3422 1.5571 15 7 5.2880 9.4729 1.3543 16 6 5.7394 10.6544 0.8294 17 1 5.0799 11.2671 0.2327 18 6 7.0445 11.0647 1.0645 19 7 7.7873 10.4251 1.9428 20 14 7.7464 12.5247 0.1345 21 1 8.3843 12.0520 -1.1204 22 1 6.6532 13.4748 -0.1933 23 1 8.7597 13.2081 0.9779 24 6 3.8775 9.3087 1.7335 25 6 3.3290 8.0759 1.0332 26 6 4.1955 6.8536 1.3517 27 1 4.1870 6.6585 2.4241 28 7 2.6897 3.2769 -0.7658 29 8 2.2996 2.1751 -1.0750 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2172 1.9104 2.1271 36 1 3.3790 4.7463 -1.2354 37 1 3.0330 6.4938 -1.2136 38 1 5.7774 5.1702 -1.0322 39 1 5.1437 6.1265 -2.3932 40 1 4.9529 8.1203 -0.8984 41 1 6.6241 7.5134 -0.9905 42 1 7.1757 8.5788 1.1247 43 1 6.3155 8.1513 2.6245 44 1 8.6994 10.7115 2.1068 45 1 3.8020 9.1750 2.8126 46 1 3.3123 10.1902 1.4310 47 1 3.3356 8.2553 -0.0418 48 1 2.3069 7.8924 1.3645 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021715877.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:19 Heat of formation + Delta-G solvation = 39.087313 kcal Electronic energy + Delta-G solvation = -29958.577247 eV Core-core repulsion = 26016.963039 eV Total energy + Delta-G solvation = -3941.614208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -46.19721 -41.75562 -39.61846 -37.24885 -35.84258 -35.21805 -34.22514 -33.97045 -31.96814 -31.28442 -31.04238 -27.50191 -27.05704 -25.45012 -25.02481 -23.96581 -23.62691 -23.22552 -22.68260 -20.40937 -19.54407 -18.90399 -18.62853 -18.51975 -17.84993 -17.16684 -16.90542 -16.37235 -15.98991 -15.79803 -15.42660 -15.25982 -15.15199 -15.10035 -14.67730 -14.45496 -14.25338 -14.12448 -13.90494 -13.67828 -13.48441 -13.27209 -13.03651 -12.86408 -12.65383 -12.54443 -12.43169 -12.11176 -12.01408 -11.89943 -11.86698 -11.75283 -11.59292 -11.49609 -11.45341 -11.23073 -10.96915 -10.55078 -10.47973 -9.74504 -8.65340 -7.86243 -5.37830 -0.03070 0.63736 1.47413 1.47933 1.56886 1.57153 1.94821 1.99003 2.50351 2.72789 3.30395 3.33422 3.58400 3.66736 3.82272 3.86419 3.94183 3.96058 4.05569 4.15578 4.16570 4.31630 4.37322 4.41340 4.45356 4.50611 4.66277 4.68982 4.73671 4.85594 4.88775 4.95686 4.98227 4.99271 5.03422 5.05846 5.09321 5.16122 5.17496 5.26313 5.38842 5.42708 5.48761 5.57777 5.63811 5.69210 6.19098 6.40719 6.74545 7.03843 7.14674 7.82167 8.37825 9.20071 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.031308 B = 0.002723 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.134722 B =10280.808209 C =10590.875025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.041 4.041 3 C -0.005 4.005 4 C -0.196 4.196 5 C -0.037 4.037 6 C 0.587 3.413 7 O -0.565 6.565 8 N -0.586 5.586 9 C 0.077 3.923 10 C -0.121 4.121 11 C -0.096 4.096 12 C -0.105 4.105 13 H 0.054 0.946 14 C 0.190 3.810 15 N -0.602 5.602 16 C -0.254 4.254 17 H 0.069 0.931 18 C -0.049 4.049 19 N -0.938 5.938 20 Si 0.969 3.031 21 H -0.284 1.284 22 H -0.268 1.268 23 H -0.298 1.298 24 C 0.145 3.855 25 C -0.124 4.124 26 C 0.161 3.839 27 H 0.070 0.930 28 N -0.338 5.338 29 O 0.121 5.879 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.189 0.811 36 H 0.133 0.867 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.049 0.951 42 H 0.066 0.934 43 H -0.013 1.013 44 H 0.249 0.751 45 H 0.009 0.991 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.711 -22.909 -8.621 28.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.078 4.078 3 C -0.068 4.068 4 C -0.219 4.219 5 C -0.194 4.194 6 C 0.374 3.626 7 O -0.443 6.443 8 N -0.317 5.317 9 C -0.045 4.045 10 C -0.159 4.159 11 C -0.134 4.134 12 C -0.126 4.126 13 H 0.073 0.927 14 C 0.063 3.937 15 N -0.325 5.325 16 C -0.384 4.384 17 H 0.087 0.913 18 C -0.244 4.244 19 N -0.585 5.585 20 Si 0.797 3.203 21 H -0.211 1.211 22 H -0.193 1.193 23 H -0.224 1.224 24 C 0.019 3.981 25 C -0.164 4.164 26 C 0.059 3.941 27 H 0.088 0.912 28 N -0.042 5.042 29 O 0.048 5.952 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.206 0.794 36 H 0.150 0.850 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.005 0.995 44 H 0.059 0.941 45 H 0.027 0.973 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.322 -21.971 -8.942 27.206 hybrid contribution 0.856 1.008 0.998 1.657 sum -12.466 -20.963 -7.944 25.651 Atomic orbital electron populations 1.21827 0.92857 1.03976 1.02338 1.20452 0.96923 0.83425 1.07030 1.25164 0.99745 0.97981 0.83910 1.22626 1.05608 0.90897 1.02743 1.23360 1.07473 0.97837 0.90682 1.17410 0.77521 0.81633 0.86060 1.90754 1.57055 1.82115 1.14392 1.48377 1.58553 1.16181 1.08546 1.22704 0.98248 1.05991 0.77525 1.21899 0.95432 0.97108 1.01448 1.21383 1.01168 0.97637 0.93221 1.21853 0.94704 0.98479 0.97581 0.92719 1.20445 0.94233 0.84570 0.94429 1.44200 1.04473 1.10652 1.73150 1.19468 0.96734 0.98126 1.24101 0.91297 1.25913 0.99145 1.00839 0.98519 1.70139 1.08896 1.43536 1.35888 0.85244 0.77923 0.79489 0.77637 1.21054 1.19258 1.22438 1.20785 0.85791 0.96023 0.95500 1.21997 0.98020 0.94357 1.02008 1.21105 0.93286 0.84081 0.95633 0.91158 1.73785 1.15508 1.00069 1.14805 1.84763 1.58973 1.17091 1.34326 0.92565 0.89117 0.92774 0.87023 0.86256 0.79354 0.85030 0.90678 0.92205 0.88454 0.91526 0.93248 0.91540 0.99464 0.94148 0.97332 0.91500 0.90850 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.89 71.98 0.71 -0.06 16 2 C -0.04 -0.21 6.50 29.85 0.19 -0.02 16 3 C 0.00 -0.07 6.73 25.01 0.17 0.10 16 4 C -0.20 -3.95 10.93 22.60 0.25 -3.70 16 5 C -0.04 -0.99 6.95 42.96 0.30 -0.69 16 6 C 0.59 20.08 7.73 86.93 0.67 20.75 16 7 O -0.56 -22.77 16.43 -3.71 -0.06 -22.83 16 8 N -0.59 -19.47 2.67 -796.78 -2.13 -21.61 16 9 C 0.08 2.13 5.85 86.34 0.50 2.63 16 10 C -0.12 -3.33 6.12 30.72 0.19 -3.15 16 11 C -0.10 -3.43 4.82 30.62 0.15 -3.28 16 12 C -0.11 -4.24 2.49 -10.87 -0.03 -4.26 16 13 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 14 C 0.19 9.48 4.65 86.23 0.40 9.88 16 15 N -0.60 -30.35 2.60 -702.12 -1.82 -32.17 16 16 C -0.25 -13.79 9.60 84.03 0.81 -12.98 16 17 H 0.07 3.62 7.85 -2.91 -0.02 3.60 16 18 C -0.05 -2.73 5.08 84.86 0.43 -2.30 16 19 N -0.94 -55.87 10.98 21.65 0.24 -55.63 16 20 Si 0.97 44.80 29.56 68.60 2.03 46.83 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 23 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 24 C 0.15 6.24 6.50 85.97 0.56 6.80 16 25 C -0.12 -4.53 4.96 30.33 0.15 -4.38 16 26 C 0.16 6.15 2.62 44.94 0.12 6.27 16 27 H 0.07 3.03 7.08 -2.39 -0.02 3.01 16 28 N -0.34 -8.07 8.52 -49.51 -0.42 -8.49 16 29 O 0.12 2.25 11.18 71.88 0.80 3.05 16 30 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 36 H 0.13 3.38 3.77 -44.02 -0.17 3.22 16 37 H 0.07 1.99 7.32 -2.39 -0.02 1.97 16 38 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 40 H 0.07 2.53 6.05 -2.39 -0.01 2.51 16 41 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.07 3.71 6.06 -2.39 -0.01 3.70 16 43 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 44 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 45 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.07 2.74 7.94 -2.39 -0.02 2.72 16 47 H 0.07 2.59 5.36 -2.39 -0.01 2.58 16 48 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -69.54 370.18 5.01 -64.53 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.81 Total: 14.70 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 5.57 Total: 11.61 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -4.14 Total: -117.89 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: 0.74 Total: -19.78 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -69.54 5.01 -64.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021715877.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.619 kcal (2) G-P(sol) polarization free energy of solvation -69.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds