Wall clock time and date at job start Tue Mar 31 2020 17:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.47308 * 2 1 4 4 C 1.35308 * 126.66769 * 90.28066 * 3 2 1 5 5 C 1.42277 * 103.92180 * 180.13530 * 4 3 2 6 6 C 1.48328 * 126.93849 * 179.91135 * 5 4 3 7 7 O 1.21501 * 119.99884 * 353.04732 * 6 5 4 8 8 N 1.34771 * 120.00028 * 173.04492 * 6 5 4 9 9 C 1.47070 * 120.84857 * 353.86432 * 8 6 5 10 10 C 1.53125 * 109.04917 * 233.40211 * 9 8 6 11 11 C 1.53142 * 109.62215 * 306.00267 * 10 9 8 12 12 C 1.52822 * 109.26007 * 60.84706 * 11 10 9 13 13 H 1.08998 * 109.47294 * 57.99640 * 12 11 10 14 14 C 1.53065 * 110.34002 * 178.53724 * 12 11 10 15 15 N 1.47080 * 108.32949 * 175.43277 * 14 12 11 16 16 C 1.36936 * 120.47274 * 126.68474 * 15 14 12 17 17 H 1.08005 * 119.99597 * 330.57321 * 16 15 14 18 18 C 1.38811 * 120.00547 * 150.57617 * 16 15 14 19 19 N 1.31628 * 119.99961 * 166.26801 * 18 16 15 20 20 Si 1.86795 * 119.99860 * 346.26749 * 18 16 15 21 21 H 1.48498 * 109.47324 * 94.99837 * 20 18 16 22 22 H 1.48496 * 109.47057 * 214.99644 * 20 18 16 23 23 H 1.48501 * 109.47004 * 334.99303 * 20 18 16 24 24 C 1.46870 * 119.05814 * 306.67630 * 15 14 12 25 25 C 1.53313 * 109.09889 * 52.66545 * 24 15 14 26 26 C 1.46716 * 120.84845 * 173.84336 * 8 6 5 27 27 H 1.08995 * 109.53774 * 245.22531 * 26 8 6 28 28 N 1.30984 * 106.12285 * 359.64898 * 5 4 3 29 29 O 1.20915 * 111.43861 * 0.22556 * 28 5 4 30 30 H 1.09002 * 109.46669 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47167 * 300.00045 * 1 2 3 32 32 H 1.08996 * 109.46870 * 60.00418 * 1 2 3 33 33 H 1.09004 * 109.47414 * 239.99632 * 2 1 3 34 34 H 1.09004 * 109.47471 * 119.99511 * 2 1 3 35 35 H 1.08000 * 128.04039 * 0.02562 * 4 3 2 36 36 H 1.09002 * 109.54282 * 113.52615 * 9 8 6 37 37 H 1.09007 * 109.53574 * 353.27319 * 9 8 6 38 38 H 1.09001 * 109.44308 * 185.96139 * 10 9 8 39 39 H 1.08999 * 109.44756 * 66.05591 * 10 9 8 40 40 H 1.08995 * 109.50738 * 300.91204 * 11 10 9 41 41 H 1.08998 * 109.50557 * 180.78332 * 11 10 9 42 42 H 1.09006 * 109.69351 * 295.14791 * 14 12 11 43 43 H 1.09004 * 109.69021 * 55.72492 * 14 12 11 44 44 H 0.96997 * 119.99247 * 179.97438 * 19 18 16 45 45 H 1.08997 * 109.53316 * 292.77301 * 24 15 14 46 46 H 1.09004 * 109.59322 * 172.58454 * 24 15 14 47 47 H 1.08992 * 109.55746 * 186.05229 * 25 24 15 48 48 H 1.09000 * 109.55973 * 65.72132 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3067 2.1809 1.0853 5 6 2.7385 3.4199 0.5352 6 6 3.1658 4.6270 1.2839 7 8 3.0502 4.6645 2.4929 8 7 3.6823 5.6820 0.6233 9 6 3.9552 5.6080 -0.8200 10 6 5.4107 6.0098 -1.0746 11 6 5.6831 7.3801 -0.4477 12 6 5.4509 7.2996 1.0606 13 1 6.0994 6.5347 1.4877 14 6 5.7518 8.6488 1.7180 15 7 5.4099 8.5542 3.1454 16 6 6.3292 8.8896 4.1033 17 1 7.3839 8.7659 3.9064 18 6 5.9056 9.3884 5.3275 19 7 6.7473 9.4566 6.3372 20 14 4.1412 9.9630 5.5419 21 1 3.3267 8.8591 6.1103 22 1 4.1082 11.1273 6.4629 23 1 3.5860 10.3594 4.2228 24 6 4.0685 8.0952 3.5288 25 6 3.7756 6.7623 2.8300 26 6 3.9862 6.9339 1.3254 27 1 3.3392 7.7276 0.9520 28 7 2.6880 3.2776 -0.7659 29 8 2.2986 2.1754 -1.0751 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.2169 1.9105 2.1271 36 1 3.2905 6.2886 -1.3521 37 1 3.7916 4.5887 -1.1701 38 1 5.5907 6.0598 -2.1485 39 1 6.0748 5.2687 -0.6300 40 1 5.0090 8.1190 -0.8808 41 1 6.7156 7.6705 -0.6421 42 1 6.8108 8.8827 1.6086 43 1 5.1524 9.4283 1.2476 44 1 6.4513 9.8055 7.1925 45 1 3.3291 8.8362 3.2250 46 1 4.0241 7.9577 4.6092 47 1 2.7440 6.4682 3.0229 48 1 4.4522 5.9958 3.2080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021715878.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:24 Heat of formation + Delta-G solvation = 73.497746 kcal Electronic energy + Delta-G solvation = -30042.669290 eV Core-core repulsion = 26102.547231 eV Total energy + Delta-G solvation = -3940.122060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.30880 -40.57902 -37.95209 -36.17628 -35.29743 -34.20383 -33.06105 -32.41556 -30.72544 -30.30986 -29.81434 -26.00758 -25.71514 -24.55519 -23.82623 -23.01307 -22.45554 -22.07657 -20.38828 -19.80983 -18.98768 -18.04083 -17.55669 -16.85805 -16.54945 -15.87779 -15.29804 -15.04674 -15.00008 -14.77409 -14.39129 -14.27191 -14.12310 -13.79611 -13.59461 -13.13464 -13.06673 -13.04234 -12.62113 -12.53673 -12.35193 -12.24471 -12.01451 -11.81792 -11.51792 -11.47024 -11.13765 -11.00395 -10.82096 -10.62300 -10.41924 -10.36325 -10.25201 -10.06904 -9.71525 -9.59594 -9.34701 -9.12459 -8.58802 -8.42329 -6.86711 -5.87144 -3.28200 0.90371 1.46428 2.59058 2.84815 3.12457 3.39859 3.52427 3.54546 3.74890 4.09892 4.52315 4.58569 4.63744 4.68060 4.76346 4.84330 4.92112 4.96172 5.01523 5.14968 5.18069 5.21674 5.32683 5.40142 5.44344 5.47582 5.50935 5.61395 5.67453 5.71011 5.80891 5.86366 5.93494 6.04581 6.09727 6.17407 6.19709 6.27867 6.36220 6.53764 6.64213 6.73946 6.77980 6.86932 7.13535 7.39773 7.77291 8.04348 8.14057 8.39106 8.99512 9.77888 10.14984 11.28972 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017930 B = 0.003269 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.237767 B = 8564.443830 C = 9634.073813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.042 4.042 3 C -0.031 4.031 4 C -0.181 4.181 5 C -0.014 4.014 6 C 0.590 3.410 7 O -0.507 6.507 8 N -0.591 5.591 9 C 0.087 3.913 10 C -0.131 4.131 11 C -0.114 4.114 12 C -0.115 4.115 13 H 0.075 0.925 14 C 0.160 3.840 15 N -0.608 5.608 16 C -0.258 4.258 17 H 0.085 0.915 18 C 0.021 3.979 19 N -0.916 5.916 20 Si 0.890 3.110 21 H -0.289 1.289 22 H -0.306 1.306 23 H -0.266 1.266 24 C 0.118 3.882 25 C -0.120 4.120 26 C 0.158 3.842 27 H 0.070 0.930 28 N -0.333 5.333 29 O 0.109 5.891 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.180 0.820 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.024 0.976 44 H 0.262 0.738 45 H 0.027 0.973 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.999 -17.943 -18.689 28.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.080 4.080 3 C -0.094 4.094 4 C -0.204 4.204 5 C -0.172 4.172 6 C 0.375 3.625 7 O -0.381 6.381 8 N -0.324 5.324 9 C -0.035 4.035 10 C -0.169 4.169 11 C -0.152 4.152 12 C -0.137 4.137 13 H 0.094 0.906 14 C 0.033 3.967 15 N -0.331 5.331 16 C -0.387 4.387 17 H 0.102 0.898 18 C -0.177 4.177 19 N -0.559 5.559 20 Si 0.721 3.279 21 H -0.217 1.217 22 H -0.235 1.235 23 H -0.191 1.191 24 C -0.008 4.008 25 C -0.159 4.159 26 C 0.056 3.944 27 H 0.088 0.912 28 N -0.038 5.038 29 O 0.039 5.961 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.197 0.803 36 H 0.085 0.915 37 H 0.130 0.870 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.042 0.958 44 H 0.072 0.928 45 H 0.044 0.956 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.724 -16.998 -18.840 27.548 hybrid contribution -0.996 0.049 0.921 1.358 sum -11.720 -16.949 -17.919 27.308 Atomic orbital electron populations 1.21810 0.93335 1.02857 1.03019 1.20159 0.96752 0.86107 1.05006 1.24495 1.02286 0.97102 0.85498 1.22453 1.04753 0.91606 1.01568 1.23801 1.05284 0.98195 0.89964 1.17081 0.78435 0.80809 0.86223 1.90906 1.55069 1.79726 1.12380 1.48123 1.61314 1.13173 1.09760 1.22347 0.96537 1.04589 0.80072 1.21889 0.95976 0.98243 1.00820 1.21532 1.01917 0.96271 0.95504 1.22097 0.95636 1.01305 0.94617 0.90616 1.20891 0.99369 0.92009 0.84382 1.44387 1.11308 1.76242 1.01204 1.18932 0.89460 1.36825 0.93444 0.89770 1.25315 0.97459 0.98617 0.96315 1.69780 1.35080 1.49306 1.01768 0.86882 0.85874 0.77600 0.77498 1.21684 1.23467 1.19085 1.21635 0.87248 0.92937 0.98973 1.22519 1.02642 0.98945 0.91784 1.21372 0.96112 0.83098 0.93799 0.91188 1.74041 1.14974 0.99165 1.15619 1.84777 1.60018 1.17578 1.33726 0.91120 0.91909 0.91999 0.89124 0.88221 0.80261 0.91480 0.87028 0.90866 0.91771 0.91895 0.91383 0.91472 0.95772 0.92832 0.95567 0.90996 0.90735 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.89 37.15 0.37 -0.27 16 2 C -0.04 -0.19 6.50 -27.88 -0.18 -0.37 16 3 C -0.03 -0.26 6.73 -35.35 -0.24 -0.50 16 4 C -0.18 -1.96 10.93 -39.08 -0.43 -2.39 16 5 C -0.01 -0.18 6.89 -82.53 -0.57 -0.75 16 6 C 0.59 9.70 7.65 -12.11 -0.09 9.61 16 7 O -0.51 -9.75 12.51 5.36 0.07 -9.68 16 8 N -0.59 -9.19 2.97 -166.24 -0.49 -9.68 16 9 C 0.09 1.09 6.14 -3.67 -0.02 1.07 16 10 C -0.13 -1.52 6.06 -26.59 -0.16 -1.68 16 11 C -0.11 -1.48 5.24 -26.75 -0.14 -1.62 16 12 C -0.12 -1.96 2.21 -90.54 -0.20 -2.16 16 13 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 14 C 0.16 3.19 5.86 -3.69 -0.02 3.17 16 15 N -0.61 -14.98 2.79 -172.24 -0.48 -15.46 16 16 C -0.26 -7.45 10.07 -15.06 -0.15 -7.60 16 17 H 0.08 2.58 8.06 -52.48 -0.42 2.16 16 18 C 0.02 0.64 5.34 -17.43 -0.09 0.55 16 19 N -0.92 -29.00 13.97 55.49 0.78 -28.23 16 20 Si 0.89 23.39 24.28 -169.99 -4.13 19.26 16 21 H -0.29 -7.48 6.78 56.52 0.38 -7.10 16 22 H -0.31 -8.14 7.11 56.52 0.40 -7.73 16 23 H -0.27 -6.73 5.87 56.52 0.33 -6.40 16 24 C 0.12 2.76 4.11 -3.68 -0.02 2.74 16 25 C -0.12 -2.46 3.79 -26.62 -0.10 -2.56 16 26 C 0.16 2.74 2.64 -67.72 -0.18 2.56 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 28 N -0.33 -4.05 8.65 33.30 0.29 -3.76 16 29 O 0.11 1.11 11.18 17.24 0.19 1.30 16 30 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.18 1.73 8.06 -52.49 -0.42 1.30 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.11 1.37 4.20 -56.66 -0.24 1.13 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.33 7.94 -51.93 -0.41 0.92 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 45 H 0.03 0.61 6.56 -51.93 -0.34 0.26 16 46 H 0.07 1.85 4.42 -51.93 -0.23 1.62 16 47 H 0.07 1.53 6.48 -51.93 -0.34 1.19 16 48 H 0.08 1.76 7.13 -51.93 -0.37 1.39 16 LS Contribution 363.14 15.07 5.47 5.47 Total: -1.00 -33.81 363.14 -8.02 -41.84 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -7.49 Total: -0.86 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -2.22 Total: -0.21 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.09 Total: -57.12 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.26 Total: -8.38 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -4.13 Total: 19.26 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.81 -8.02 -41.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021715878.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.333 kcal (2) G-P(sol) polarization free energy of solvation -33.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds