Wall clock time and date at job start Tue Mar 31 2020 18:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.47104 * 2 1 4 4 N 1.29936 * 125.38168 * 90.33961 * 3 2 1 5 5 C 1.36062 * 108.47846 * 180.16775 * 4 3 2 6 6 C 1.47424 * 126.44945 * 179.82727 * 5 4 3 7 7 O 1.21608 * 119.99871 * 179.68949 * 6 5 4 8 8 N 1.34776 * 119.99674 * 359.68997 * 6 5 4 9 9 C 1.49624 * 126.07499 * 359.97365 * 8 6 5 10 10 C 1.51522 * 102.49648 * 154.35374 * 9 8 6 11 11 H 1.09004 * 111.12947 * 287.41094 * 10 9 8 12 12 C 1.51562 * 123.33705 * 151.62972 * 10 9 8 13 13 C 1.56337 * 101.81386 * 207.25964 * 12 10 9 14 14 C 1.56004 * 105.77216 * 25.43779 * 13 12 10 15 15 H 1.08993 * 110.52426 * 125.72531 * 14 13 12 16 16 N 1.46499 * 110.52583 * 248.33556 * 14 13 12 17 17 C 1.36932 * 119.99549 * 273.54424 * 16 14 13 18 18 H 1.08003 * 120.00354 * 0.02562 * 17 16 14 19 19 C 1.38817 * 120.00011 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00154 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99635 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99668 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99848 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99841 * 21 19 17 25 25 C 1.49701 * 103.98376 * 6.95825 * 14 13 12 26 26 H 1.08999 * 108.54627 * 77.96904 * 25 14 13 27 27 C 1.49289 * 126.07232 * 179.97438 * 8 6 5 28 28 C 1.36091 * 107.10141 * 359.56654 * 5 4 3 29 29 C 1.50698 * 126.52391 * 180.24378 * 28 5 4 30 30 O 1.34059 * 125.37699 * 270.02473 * 3 2 1 31 31 H 1.08991 * 109.47277 * 300.00612 * 1 2 3 32 32 H 1.09001 * 109.46586 * 60.00539 * 1 2 3 33 33 H 1.09001 * 109.46768 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47437 * 240.00262 * 2 1 3 35 35 H 1.09001 * 109.47100 * 119.99348 * 2 1 3 36 36 H 1.08998 * 110.80138 * 36.10161 * 9 8 6 37 37 H 1.08994 * 110.97129 * 272.68357 * 9 8 6 38 38 H 1.09006 * 110.95733 * 89.12957 * 12 10 9 39 39 H 1.08996 * 110.99061 * 325.40554 * 12 10 9 40 40 H 1.09002 * 110.18600 * 266.36037 * 13 12 10 41 41 H 1.09002 * 110.25270 * 144.54711 * 13 12 10 42 42 H 0.96993 * 120.00302 * 93.54388 * 16 14 13 43 43 H 0.96998 * 119.99442 * 179.97438 * 20 19 17 44 44 H 1.08999 * 110.39332 * 292.41334 * 27 8 6 45 45 H 1.09001 * 110.39445 * 54.69064 * 27 8 6 46 46 H 1.09005 * 109.47561 * 89.99993 * 29 28 5 47 47 H 1.09003 * 109.47019 * 210.00163 * 29 28 5 48 48 H 1.09005 * 109.47093 * 329.99496 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2891 2.1281 1.0594 5 6 2.7172 3.3575 0.6638 6 6 3.1118 4.4726 1.5438 7 8 3.4837 5.5253 1.0617 8 7 3.0603 4.3252 2.8825 9 6 2.6257 3.0966 3.6175 10 6 3.3531 3.2311 4.9398 11 1 4.4201 3.0416 4.8224 12 6 2.8345 2.6476 6.2389 13 6 3.4672 3.6092 7.2969 14 6 3.7086 4.9588 6.5524 15 1 3.2355 5.7811 7.0890 16 7 5.1434 5.2085 6.3940 17 6 5.8441 5.8317 7.3918 18 1 5.3391 6.1387 8.2958 19 6 7.2038 6.0679 7.2420 20 7 7.8774 6.6664 8.2014 21 14 8.0773 5.5362 5.6788 22 1 8.5888 4.1518 5.8439 23 1 9.2129 6.4545 5.4095 24 1 7.1250 5.5795 4.5403 25 6 3.0605 4.7569 5.2182 26 1 1.9827 4.8697 5.3356 27 6 3.4267 5.3589 3.8953 28 6 2.7183 3.3622 -0.6971 29 6 3.1223 4.5071 -1.5898 30 8 2.2906 2.1528 -1.0931 31 1 -0.3633 0.5139 0.8898 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5137 0.8901 36 1 2.9439 2.1972 3.0903 37 1 1.5462 3.0935 3.7681 38 1 3.1907 1.6268 6.3775 39 1 1.7459 2.6873 6.2777 40 1 4.4128 3.2033 7.6561 41 1 2.7808 3.7570 8.1306 42 1 5.5970 4.9324 5.5823 43 1 8.8276 6.8310 8.0967 44 1 4.4983 5.5559 3.8664 45 1 2.8675 6.2779 3.7196 46 1 4.1888 4.4410 -1.8055 47 1 2.5593 4.4573 -2.5218 48 1 2.9109 5.4513 -1.0878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026372113.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:13 Heat of formation + Delta-G solvation = -5.740637 kcal Electronic energy + Delta-G solvation = -29510.439387 eV Core-core repulsion = 25566.881294 eV Total energy + Delta-G solvation = -3943.558094 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.56643 -41.75761 -39.90449 -36.89303 -36.11539 -35.11635 -35.04025 -33.02378 -32.61839 -31.13172 -30.14263 -28.17930 -27.16474 -25.73041 -24.83759 -24.37039 -23.41922 -22.23718 -21.18367 -20.55214 -20.49893 -19.74479 -18.51383 -18.11545 -17.57236 -16.99674 -16.65986 -16.46913 -16.01355 -15.82533 -15.59606 -15.49345 -15.15310 -14.97812 -14.61061 -14.44670 -14.20076 -14.05345 -13.81413 -13.58563 -13.52950 -13.35240 -13.29642 -13.00778 -12.68419 -12.59546 -12.41106 -12.35890 -12.33275 -12.04111 -11.97718 -11.91971 -11.84631 -11.60252 -11.47407 -11.16882 -11.00355 -10.90512 -10.06404 -9.69233 -9.30071 -8.03886 -5.34591 -0.06216 0.89155 1.31469 1.33461 1.35369 1.39312 1.68545 2.09742 2.43718 2.72557 2.94458 3.28696 3.43276 3.52851 3.53444 3.82546 3.90463 4.04813 4.10379 4.20325 4.25536 4.27501 4.33913 4.39517 4.45204 4.49141 4.50660 4.56960 4.67638 4.73509 4.80732 4.82323 4.88717 4.92515 4.99063 4.99936 5.02097 5.05830 5.08226 5.20117 5.24679 5.32845 5.36622 5.40987 5.61259 5.80457 6.21954 6.25261 6.42224 6.88721 7.07120 7.84976 8.01892 9.18054 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014754 B = 0.003330 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.294331 B = 8406.547566 C = 9410.881979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.025 4.025 3 C 0.200 3.800 4 N -0.471 5.471 5 C -0.097 4.097 6 C 0.606 3.394 7 O -0.570 6.570 8 N -0.611 5.611 9 C 0.133 3.867 10 C -0.116 4.116 11 H 0.060 0.940 12 C -0.082 4.082 13 C -0.138 4.138 14 C 0.193 3.807 15 H 0.056 0.944 16 N -0.747 5.747 17 C -0.218 4.218 18 H 0.066 0.934 19 C -0.059 4.059 20 N -0.982 5.982 21 Si 0.941 3.059 22 H -0.278 1.278 23 H -0.296 1.296 24 H -0.268 1.268 25 C -0.124 4.124 26 H 0.102 0.898 27 C 0.133 3.867 28 C 0.043 3.957 29 C -0.074 4.074 30 O -0.195 6.195 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.049 0.951 41 H 0.075 0.925 42 H 0.360 0.640 43 H 0.256 0.744 44 H 0.042 0.958 45 H 0.074 0.926 46 H 0.100 0.900 47 H 0.109 0.891 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.368 -17.285 -20.422 33.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.063 4.063 3 C -0.009 4.009 4 N -0.200 5.200 5 C -0.216 4.216 6 C 0.395 3.605 7 O -0.450 6.450 8 N -0.343 5.343 9 C 0.013 3.987 10 C -0.135 4.135 11 H 0.078 0.922 12 C -0.120 4.120 13 C -0.178 4.178 14 C 0.084 3.916 15 H 0.074 0.926 16 N -0.390 5.390 17 C -0.349 4.349 18 H 0.084 0.916 19 C -0.251 4.251 20 N -0.633 5.633 21 Si 0.770 3.230 22 H -0.205 1.205 23 H -0.223 1.223 24 H -0.193 1.193 25 C -0.143 4.143 26 H 0.120 0.880 27 C 0.012 3.988 28 C -0.014 4.014 29 C -0.131 4.131 30 O -0.083 6.083 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.193 0.807 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.093 0.907 46 H 0.118 0.882 47 H 0.127 0.873 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -19.219 -16.822 -19.938 32.402 hybrid contribution 1.513 0.685 -1.055 1.967 sum -17.707 -16.137 -20.993 31.854 Atomic orbital electron populations 1.21778 0.92087 1.04363 1.02236 1.20440 0.97462 0.81262 1.07123 1.27299 0.98137 0.97931 0.77552 1.70777 1.16630 1.02164 1.30413 1.21203 1.13177 0.94635 0.92580 1.16700 0.77512 0.85552 0.80743 1.90756 1.50316 1.28959 1.75009 1.49634 1.64135 1.16450 1.04074 1.21965 0.99389 0.86858 0.90499 1.22629 1.00003 0.95829 0.95084 0.92166 1.21773 1.01174 0.98426 0.90590 1.23623 1.00376 0.95331 0.98504 1.20292 0.82404 0.96124 0.92765 0.92631 1.42847 1.06157 1.71498 1.18543 1.19077 0.91192 1.27926 0.96681 0.91642 1.25311 0.97430 1.02042 1.00290 1.69847 1.08319 1.50181 1.34967 0.85619 0.78423 0.77783 0.81135 1.20455 1.22304 1.19346 1.21930 1.02444 0.97114 0.92858 0.88013 1.20860 0.99699 0.90903 0.87349 1.24071 0.96783 0.86324 0.94210 1.20663 1.03462 0.90738 0.98197 1.84353 1.63778 1.21888 1.38236 0.92858 0.92566 0.88430 0.86489 0.86172 0.88200 0.89242 0.90395 0.88627 0.93177 0.90618 0.80672 0.93469 0.93920 0.90727 0.88173 0.87277 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.90 71.98 0.71 -0.27 16 2 C -0.03 -0.21 6.56 29.85 0.20 -0.01 16 3 C 0.20 3.62 7.56 88.39 0.67 4.29 16 4 N -0.47 -11.14 8.47 -293.02 -2.48 -13.62 16 5 C -0.10 -2.71 6.83 40.41 0.28 -2.43 16 6 C 0.61 20.17 7.87 86.66 0.68 20.85 16 7 O -0.57 -21.62 15.17 -4.06 -0.06 -21.68 16 8 N -0.61 -19.15 3.43 -818.68 -2.80 -21.95 16 9 C 0.13 3.32 5.98 85.29 0.51 3.83 16 10 C -0.12 -3.11 3.06 -10.03 -0.03 -3.14 16 11 H 0.06 1.95 7.97 -2.39 -0.02 1.93 16 12 C -0.08 -1.83 6.62 31.28 0.21 -1.63 16 13 C -0.14 -4.20 6.74 32.80 0.22 -3.98 16 14 C 0.19 6.98 3.45 44.98 0.16 7.13 16 15 H 0.06 2.09 8.11 -2.39 -0.02 2.07 16 16 N -0.75 -34.92 4.74 -323.03 -1.53 -36.45 16 17 C -0.22 -12.38 10.46 84.04 0.88 -11.50 16 18 H 0.07 4.01 8.06 -2.91 -0.02 3.99 16 19 C -0.06 -3.56 5.50 84.86 0.47 -3.10 16 20 N -0.98 -63.82 13.97 21.65 0.30 -63.52 16 21 Si 0.94 48.00 27.73 68.60 1.90 49.90 16 22 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 23 H -0.30 -15.29 7.11 99.48 0.71 -14.59 16 24 H -0.27 -13.05 6.52 99.48 0.65 -12.40 16 25 C -0.12 -3.71 2.26 -11.14 -0.03 -3.74 16 26 H 0.10 2.53 7.99 -2.39 -0.02 2.51 16 27 C 0.13 4.52 6.69 84.84 0.57 5.09 16 28 C 0.04 1.00 7.44 25.19 0.19 1.18 16 29 C -0.07 -1.33 9.88 71.24 0.70 -0.63 16 30 O -0.19 -3.87 10.73 0.35 0.00 -3.86 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.10 2.48 6.18 -2.39 -0.01 2.47 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.05 1.81 7.98 -2.39 -0.02 1.80 16 41 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.36 16.98 4.58 -92.71 -0.42 16.56 16 43 H 0.26 15.98 8.31 -92.71 -0.77 15.20 16 44 H 0.04 1.72 7.16 -2.39 -0.02 1.70 16 45 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 46 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 47 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.10 2.11 6.48 -2.38 -0.02 2.09 16 Total: -1.00 -76.45 382.29 2.19 -74.26 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 0.49 Total: 24.97 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 6.38 Total: 11.96 kcal Atomic # 7 Polarization: -129.03 SS G_CDS: -6.51 Total: -135.55 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.06 Total: -25.54 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 1.90 Total: 49.90 kcal Total: -76.45 2.19 -74.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026372113.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.519 kcal (2) G-P(sol) polarization free energy of solvation -76.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds