Wall clock time and date at job start Tue Mar 31 2020 18:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47132 * 2 1 4 4 N 1.30618 * 125.41833 * 90.03113 * 3 2 1 5 5 C 1.33693 * 108.99113 * 179.74675 * 4 3 2 6 6 C 1.50699 * 126.27117 * 180.25772 * 5 4 3 7 7 C 1.36343 * 107.45497 * 0.36641 * 5 4 3 8 8 C 1.46720 * 126.64452 * 179.89639 * 7 5 4 9 9 O 1.21681 * 119.99797 * 359.71942 * 8 7 5 10 10 N 1.34774 * 119.99758 * 179.71025 * 8 7 5 11 11 C 1.49210 * 126.06104 * 0.05061 * 10 8 7 12 12 C 1.50329 * 104.32910 * 172.12204 * 11 10 8 13 13 H 1.08998 * 110.85432 * 279.87271 * 12 11 10 14 14 C 1.51003 * 124.69414 * 145.19210 * 12 11 10 15 15 C 1.56685 * 101.58389 * 204.25561 * 14 12 11 16 16 C 1.55943 * 105.65259 * 25.14204 * 15 14 12 17 17 H 1.09003 * 110.49565 * 248.68734 * 16 15 14 18 18 N 1.46498 * 110.49637 * 126.15328 * 16 15 14 19 19 C 1.36943 * 119.99752 * 87.98606 * 18 16 15 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 16 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 16 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47294 * 90.00155 * 23 21 19 25 25 H 1.48499 * 109.47218 * 210.00015 * 23 21 19 26 26 H 1.48496 * 109.47166 * 329.99846 * 23 21 19 27 27 C 1.50294 * 104.27297 * 7.41913 * 16 15 14 28 28 H 1.09000 * 109.99397 * 80.54555 * 27 16 15 29 29 C 1.49704 * 126.05647 * 180.02562 * 10 8 7 30 30 O 1.33661 * 125.42435 * 270.00301 * 3 2 1 31 31 H 1.08997 * 109.47090 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46598 * 299.99483 * 1 2 3 33 33 H 1.08995 * 109.47644 * 59.99288 * 1 2 3 34 34 H 1.09000 * 109.46598 * 240.00517 * 2 1 3 35 35 H 1.08995 * 109.47644 * 120.00712 * 2 1 3 36 36 H 1.09004 * 109.47087 * 270.13031 * 6 5 4 37 37 H 1.08995 * 109.47295 * 30.13334 * 6 5 4 38 38 H 1.08996 * 109.46991 * 150.13463 * 6 5 4 39 39 H 1.09000 * 110.35991 * 291.73714 * 11 10 8 40 40 H 1.08996 * 110.36577 * 53.94248 * 11 10 8 41 41 H 1.08990 * 111.00387 * 322.41965 * 14 12 11 42 42 H 1.09005 * 111.00203 * 86.26631 * 14 12 11 43 43 H 1.09002 * 110.30197 * 266.08387 * 15 14 12 44 44 H 1.09000 * 110.20971 * 144.15853 * 15 14 12 45 45 H 0.97001 * 120.00384 * 268.26962 * 18 16 15 46 46 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 47 47 H 1.08997 * 110.84268 * 36.70743 * 29 10 8 48 48 H 1.08998 * 111.01598 * 273.18128 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2852 2.1344 1.0645 5 6 2.7177 3.3416 0.6864 6 6 3.1248 4.4691 1.5996 7 6 2.7207 3.3665 -0.6768 8 6 3.1191 4.4907 -1.5312 9 8 3.4893 5.5353 -1.0288 10 7 3.0750 4.3664 -2.8725 11 6 2.6445 3.1542 -3.6285 12 6 2.5938 3.6075 -5.0609 13 1 1.6713 4.1516 -5.2634 14 6 2.9481 2.7448 -6.2485 15 6 3.3367 3.8236 -7.3163 16 6 3.7909 5.0749 -6.5042 17 1 3.0730 5.8868 -6.6207 18 7 5.1247 5.5063 -6.9298 19 6 5.2601 6.3839 -7.9723 20 1 4.3835 6.7614 -8.4778 21 6 6.5241 6.7882 -8.3794 22 7 7.5924 6.3277 -7.7637 23 14 6.7089 7.9858 -9.8010 24 1 6.7035 9.3766 -9.2805 25 1 7.9907 7.7255 -10.5041 26 1 5.5795 7.8074 -10.7485 27 6 3.8215 4.6003 -5.0785 28 1 4.7445 4.0527 -4.8877 29 6 3.4490 5.4202 -3.8679 30 8 2.2905 2.1513 -1.0892 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.8932 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 2.2552 5.0869 1.8241 37 1 3.5280 4.0592 2.5256 38 1 3.8855 5.0768 1.1098 39 1 3.3653 2.3476 -3.4943 40 1 1.6545 2.8354 -3.3023 41 1 3.7935 2.0956 -6.0215 42 1 2.0879 2.1623 -6.5787 43 1 2.4746 4.0701 -7.9361 44 1 4.1556 3.4607 -7.9374 45 1 5.9120 5.1672 -6.4759 46 1 8.4757 6.6105 -8.0479 47 1 4.3012 6.0013 -3.5157 48 1 2.6018 6.0704 -4.0857 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026394507.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:56 Heat of formation + Delta-G solvation = 10.094108 kcal Electronic energy + Delta-G solvation = -29068.879355 eV Core-core repulsion = 25126.007908 eV Total energy + Delta-G solvation = -3942.871448 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.67307 -40.54594 -38.67399 -35.81629 -35.17592 -34.58556 -33.42439 -31.13989 -30.94276 -29.89182 -28.58297 -27.65712 -25.59389 -25.13194 -23.41092 -22.96727 -21.84609 -21.47108 -20.27325 -19.97634 -19.16949 -17.61039 -17.29356 -17.00218 -16.46936 -16.18286 -15.40691 -15.04103 -14.95339 -14.78261 -14.43611 -14.01998 -13.84652 -13.72665 -13.43348 -13.34496 -13.05781 -12.89512 -12.82909 -12.48979 -12.31157 -12.14565 -11.99089 -11.69581 -11.60311 -11.47266 -11.22256 -11.17999 -10.94456 -10.83497 -10.79359 -10.53417 -10.20400 -10.17263 -10.11136 -9.79902 -9.60647 -9.12462 -8.93949 -8.68329 -7.00092 -5.79623 -3.09080 0.62282 2.12266 2.15963 2.78248 2.98376 3.42050 3.47300 3.48846 3.54181 4.03798 4.36936 4.45489 4.55765 4.63137 4.65097 4.79176 4.83730 5.01600 5.19485 5.21481 5.26816 5.29681 5.33990 5.40648 5.45738 5.50174 5.50632 5.54081 5.63640 5.67059 5.70441 5.76965 5.81477 5.87726 5.90916 5.99859 6.07300 6.11599 6.12502 6.28188 6.30766 6.44741 6.59197 6.74589 7.01831 7.24272 7.40093 7.67994 7.89859 8.38471 9.49859 10.06111 10.40469 11.42769 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.002621 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.332926 B =10680.023235 C =11685.253307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.030 4.030 3 C 0.216 3.784 4 N -0.488 5.488 5 C 0.078 3.922 6 C -0.080 4.080 7 C -0.109 4.109 8 C 0.620 3.380 9 O -0.516 6.516 10 N -0.615 5.615 11 C 0.125 3.875 12 C -0.129 4.129 13 H 0.084 0.916 14 C -0.098 4.098 15 C -0.143 4.143 16 C 0.197 3.803 17 H 0.056 0.944 18 N -0.720 5.720 19 C -0.241 4.241 20 H 0.071 0.929 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.118 4.118 28 H 0.083 0.917 29 C 0.131 3.869 30 O -0.183 6.183 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.087 0.913 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.075 -13.917 15.025 25.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.068 4.068 3 C 0.010 3.990 4 N -0.217 5.217 5 C -0.046 4.046 6 C -0.137 4.137 7 C -0.164 4.164 8 C 0.408 3.592 9 O -0.395 6.395 10 N -0.348 5.348 11 C 0.003 3.997 12 C -0.149 4.149 13 H 0.103 0.897 14 C -0.136 4.136 15 C -0.184 4.184 16 C 0.086 3.914 17 H 0.074 0.926 18 N -0.360 5.360 19 C -0.372 4.372 20 H 0.089 0.911 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.138 4.138 28 H 0.102 0.898 29 C 0.011 3.989 30 O -0.069 6.069 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.116 0.884 35 H 0.127 0.873 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.106 0.894 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.950 -13.440 15.763 25.546 hybrid contribution 0.494 0.607 -1.361 1.570 sum -14.456 -12.833 14.403 24.106 Atomic orbital electron populations 1.21787 0.92714 1.03237 1.03136 1.20180 0.97112 0.83857 1.05627 1.26571 0.96912 0.96642 0.78852 1.70332 1.17745 1.03688 1.29983 1.22056 0.97345 0.93992 0.91239 1.20387 1.02838 0.93107 0.97402 1.22895 1.12374 0.86166 0.94985 1.15905 0.78471 0.84571 0.80281 1.90869 1.48672 1.26877 1.73039 1.49758 1.64542 1.16280 1.04237 1.21336 0.99952 0.87079 0.91317 1.22213 0.99999 0.99739 0.92923 0.89745 1.21811 1.00417 0.97218 0.94201 1.23863 1.00895 0.96014 0.97655 1.20083 0.89566 0.93813 0.87957 0.92611 1.42498 1.01253 1.53222 1.39066 1.19234 0.92229 1.18075 1.07683 0.91120 1.24752 0.95492 1.00758 0.99832 1.69661 0.97270 1.47751 1.43300 0.86206 0.77004 0.81032 0.82031 1.21689 1.21809 1.20760 1.22522 0.98139 0.97512 0.95623 0.89837 1.21575 1.00926 0.89375 0.87022 1.84524 1.63397 1.22056 1.36947 0.90602 0.91687 0.91962 0.88427 0.87315 0.90057 0.90507 0.88548 0.90946 0.91057 0.91578 0.92136 0.92592 0.90669 0.78148 0.93468 0.89446 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.89 37.16 0.37 -0.38 16 2 C -0.03 -0.17 6.56 -27.88 -0.18 -0.36 16 3 C 0.22 2.27 7.57 -12.79 -0.10 2.17 16 4 N -0.49 -6.08 11.26 -7.07 -0.08 -6.16 16 5 C 0.08 1.04 7.16 -82.46 -0.59 0.44 16 6 C -0.08 -0.91 9.87 36.01 0.36 -0.55 16 7 C -0.11 -1.52 6.99 -36.84 -0.26 -1.78 16 8 C 0.62 9.63 7.85 -12.84 -0.10 9.53 16 9 O -0.52 -9.12 15.13 5.21 0.08 -9.04 16 10 N -0.61 -8.87 3.43 -173.12 -0.59 -9.47 16 11 C 0.12 1.50 5.47 -3.87 -0.02 1.48 16 12 C -0.13 -1.61 2.75 -90.27 -0.25 -1.86 16 13 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.10 -1.23 6.71 -25.75 -0.17 -1.40 16 15 C -0.14 -2.30 6.76 -23.17 -0.16 -2.45 16 16 C 0.20 3.63 3.39 -67.71 -0.23 3.40 16 17 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 18 N -0.72 -17.25 5.11 -53.21 -0.27 -17.53 16 19 C -0.24 -6.48 9.97 -15.06 -0.15 -6.63 16 20 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 23 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C -0.12 -1.85 2.44 -90.35 -0.22 -2.07 16 28 H 0.08 1.43 7.92 -51.93 -0.41 1.02 16 29 C 0.13 2.02 6.77 -3.32 -0.02 1.99 16 30 O -0.18 -2.19 8.58 4.43 0.04 -2.16 16 31 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 1.20 6.47 -51.93 -0.34 0.86 16 39 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 40 H 0.07 0.77 7.44 -51.93 -0.39 0.39 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.07 1.39 7.98 -51.93 -0.41 0.97 16 45 H 0.38 9.92 7.66 -40.82 -0.31 9.61 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.09 1.49 8.10 -51.93 -0.42 1.07 16 48 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 388.72 15.07 5.86 5.86 Total: -1.00 -31.98 388.72 -8.83 -40.81 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -7.74 Total: 6.56 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -1.82 Total: 1.10 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -0.22 Total: -60.21 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.12 Total: -11.20 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.98 -8.83 -40.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026394507.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.908 kcal (2) G-P(sol) polarization free energy of solvation -31.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds