Wall clock time and date at job start Tue Mar 31 2020 18:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47087 * 2 1 4 4 N 1.30621 * 125.42415 * 89.97113 * 3 2 1 5 5 C 1.33694 * 109.00005 * 180.02562 * 4 3 2 6 6 C 1.50696 * 126.27579 * 180.02562 * 5 4 3 7 7 C 1.36348 * 107.44854 * 0.02562 * 5 4 3 8 8 C 1.46724 * 126.64129 * 179.97438 * 7 5 4 9 9 O 1.21682 * 119.99724 * 359.97438 * 8 7 5 10 10 N 1.34772 * 119.99980 * 179.97438 * 8 7 5 11 11 C 1.46914 * 125.61575 * 359.95575 * 10 8 7 12 12 C 1.54212 * 107.63029 * 178.51628 * 11 10 8 13 13 H 1.08999 * 113.72192 * 215.27593 * 12 11 10 14 14 C 1.54979 * 108.03412 * 87.01397 * 12 11 10 15 15 C 1.54132 * 104.56695 * 214.53452 * 14 12 11 16 16 C 1.53872 * 106.53977 * 24.51247 * 15 14 12 17 17 H 1.09005 * 109.92116 * 238.93345 * 16 15 14 18 18 N 1.46502 * 109.92063 * 117.82543 * 16 15 14 19 19 C 1.36932 * 120.00013 * 86.45622 * 18 16 15 20 20 H 1.07994 * 119.99916 * 359.97438 * 19 18 16 21 21 C 1.38808 * 119.99854 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00207 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00089 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47283 * 89.99658 * 23 21 19 25 25 H 1.48502 * 109.47177 * 209.99964 * 23 21 19 26 26 H 1.48503 * 109.46633 * 329.99545 * 23 21 19 27 27 C 1.53709 * 107.02848 * 358.27680 * 16 15 14 28 28 H 1.09002 * 112.96790 * 214.07982 * 27 16 15 29 29 C 1.47339 * 125.62068 * 179.97438 * 10 8 7 30 30 O 1.33664 * 125.42603 * 270.26340 * 3 2 1 31 31 H 1.08999 * 109.47285 * 300.00121 * 1 2 3 32 32 H 1.09005 * 109.46807 * 60.00390 * 1 2 3 33 33 H 1.09003 * 109.47061 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47285 * 239.99879 * 2 1 3 35 35 H 1.08999 * 109.47328 * 120.00046 * 2 1 3 36 36 H 1.08998 * 109.47395 * 269.97930 * 6 5 4 37 37 H 1.09003 * 109.46981 * 29.98211 * 6 5 4 38 38 H 1.09004 * 109.46752 * 149.97926 * 6 5 4 39 39 H 1.08995 * 109.81980 * 298.04075 * 11 10 8 40 40 H 1.08998 * 109.82302 * 58.90662 * 11 10 8 41 41 H 1.08998 * 110.44543 * 95.75663 * 14 12 11 42 42 H 1.09003 * 110.42209 * 333.29333 * 14 12 11 43 43 H 1.09002 * 110.05258 * 265.22682 * 15 14 12 44 44 H 1.09000 * 110.04775 * 143.79498 * 15 14 12 45 45 H 0.97001 * 119.99674 * 266.45195 * 18 16 15 46 46 H 0.96996 * 119.99955 * 179.97438 * 22 21 19 47 47 H 1.09004 * 110.29853 * 84.94294 * 29 10 8 48 48 H 1.09005 * 110.29955 * 322.80903 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2841 2.1348 1.0644 5 6 2.7112 3.3439 0.6864 6 6 3.1107 4.4742 1.5996 7 6 2.7191 3.3670 -0.6769 8 6 3.1158 4.4919 -1.5313 9 8 3.4841 5.5372 -1.0289 10 7 3.0722 4.3674 -2.8726 11 6 2.6502 3.1671 -3.6071 12 6 2.7239 3.4910 -5.1130 13 1 1.9411 3.0144 -5.7030 14 6 4.1654 3.1927 -5.5980 15 6 4.4412 4.2611 -6.6741 16 6 3.5144 5.4486 -6.3602 17 1 2.8611 5.6447 -7.2105 18 7 4.3132 6.6393 -6.0596 19 6 4.7386 7.4528 -7.0756 20 1 4.4855 7.2165 -8.0986 21 6 5.4949 8.5813 -6.7907 22 7 5.8029 8.8697 -5.5439 23 14 6.0746 9.6916 -8.1767 24 1 5.0559 10.7423 -8.4283 25 1 7.3601 10.3297 -7.7950 26 1 6.2688 8.8852 -9.4085 27 6 2.6749 5.0527 -5.1350 28 1 1.6653 5.4628 -5.1607 29 6 3.4402 5.4125 -3.8438 30 8 2.2858 2.1529 -1.0892 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.2382 5.0892 1.8197 37 1 3.5117 4.0669 2.5278 38 1 3.8713 5.0839 1.1118 39 1 3.3178 2.3376 -3.3743 40 1 1.6278 2.9066 -3.3334 41 1 4.2225 2.1939 -6.0305 42 1 4.8721 3.2920 -4.7740 43 1 4.2157 3.8622 -7.6632 44 1 5.4832 4.5778 -6.6278 45 1 4.5407 6.8514 -5.1408 46 1 6.3318 9.6581 -5.3449 47 1 4.5149 5.3986 -4.0252 48 1 3.1299 6.3923 -3.4808 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026394509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:03 Heat of formation + Delta-G solvation = -0.566362 kcal Electronic energy + Delta-G solvation = -29508.188613 eV Core-core repulsion = 25564.854893 eV Total energy + Delta-G solvation = -3943.333720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.61591 -40.43456 -38.49220 -35.71386 -34.99033 -34.54663 -33.28935 -31.07018 -30.95025 -29.57225 -28.45524 -27.70167 -25.68626 -25.04350 -23.58922 -23.12227 -21.81807 -21.43443 -19.95035 -19.77057 -18.90977 -17.67247 -17.28904 -17.13564 -16.25882 -15.83786 -15.68353 -15.09672 -14.94608 -14.66286 -14.37100 -14.02683 -13.59678 -13.37429 -13.34186 -13.16518 -13.05401 -12.89396 -12.56996 -12.51173 -12.42418 -12.27939 -12.10536 -11.66829 -11.59953 -11.31205 -11.14715 -11.03179 -10.81669 -10.69556 -10.58051 -10.50910 -10.33585 -10.17664 -10.05112 -9.81764 -9.62296 -9.03115 -8.91226 -8.49639 -6.97607 -5.76693 -3.06792 0.69283 2.19337 2.22106 2.99728 3.07934 3.43419 3.48431 3.50484 3.60688 4.32753 4.48643 4.51501 4.56897 4.65856 4.68473 4.75925 4.83610 4.96699 5.23892 5.30461 5.32669 5.38455 5.43634 5.45213 5.48614 5.53056 5.58443 5.60022 5.67188 5.72777 5.76170 5.82142 5.86631 5.92187 5.94802 6.02277 6.17625 6.22161 6.31000 6.42025 6.46608 6.49389 6.62859 6.77109 7.07391 7.34713 7.51722 7.70484 8.03474 8.41356 9.52211 10.08591 10.41973 11.45497 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019214 B = 0.002904 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.896710 B = 9639.888712 C =10797.108158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.029 4.029 3 C 0.213 3.787 4 N -0.487 5.487 5 C 0.077 3.923 6 C -0.081 4.081 7 C -0.107 4.107 8 C 0.616 3.384 9 O -0.509 6.509 10 N -0.604 5.604 11 C 0.108 3.892 12 C -0.100 4.100 13 H 0.104 0.896 14 C -0.115 4.115 15 C -0.146 4.146 16 C 0.183 3.817 17 H 0.055 0.945 18 N -0.725 5.725 19 C -0.243 4.243 20 H 0.071 0.929 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.105 4.105 28 H 0.089 0.911 29 C 0.117 3.883 30 O -0.183 6.183 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.386 0.614 46 H 0.256 0.744 47 H 0.087 0.913 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.531 -20.299 9.489 24.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.067 4.067 3 C 0.007 3.993 4 N -0.217 5.217 5 C -0.047 4.047 6 C -0.138 4.138 7 C -0.162 4.162 8 C 0.403 3.597 9 O -0.387 6.387 10 N -0.336 5.336 11 C -0.015 4.015 12 C -0.120 4.120 13 H 0.122 0.878 14 C -0.153 4.153 15 C -0.186 4.186 16 C 0.072 3.928 17 H 0.073 0.927 18 N -0.368 5.368 19 C -0.374 4.374 20 H 0.089 0.911 21 C -0.208 4.208 22 N -0.578 5.578 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.125 4.125 28 H 0.108 0.892 29 C -0.004 4.004 30 O -0.070 6.070 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.115 0.885 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.222 0.778 46 H 0.066 0.934 47 H 0.105 0.895 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.342 -19.839 10.214 24.594 hybrid contribution 0.522 0.828 -1.157 1.516 sum -9.820 -19.010 9.057 23.235 Atomic orbital electron populations 1.21790 0.92751 1.03177 1.03168 1.20159 0.97082 0.83909 1.05528 1.26546 0.97203 0.96630 0.78914 1.70321 1.17754 1.03631 1.29996 1.22052 0.97445 0.93959 0.91261 1.20395 1.02976 0.93058 0.97358 1.22954 1.12080 0.86118 0.95051 1.15909 0.78838 0.84643 0.80310 1.90900 1.48256 1.26626 1.72922 1.48393 1.64569 1.16286 1.04368 1.22067 0.99743 0.87363 0.92298 1.23184 0.98855 0.96574 0.93348 0.87768 1.22432 0.94652 0.98871 0.99311 1.22985 1.02545 0.96215 0.96884 1.20665 0.91010 0.87555 0.93530 0.92741 1.42699 1.61689 1.24977 1.07464 1.19226 1.26738 1.02898 0.88529 0.91144 1.24756 1.01056 0.98778 0.96211 1.69659 1.43118 1.28375 1.16657 0.86213 0.77962 0.80856 0.81265 1.21737 1.21810 1.20801 1.23231 0.99753 0.94023 0.95511 0.89227 1.22290 1.00688 0.91006 0.86421 1.84521 1.63375 1.22147 1.36933 0.91665 0.91970 0.90651 0.88521 0.87368 0.90024 0.90558 0.88457 0.91347 0.91721 0.92271 0.91821 0.92931 0.90702 0.77777 0.93398 0.89516 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.89 37.16 0.37 -0.42 16 2 C -0.03 -0.18 6.56 -27.89 -0.18 -0.36 16 3 C 0.21 2.33 7.57 -12.79 -0.10 2.23 16 4 N -0.49 -6.35 11.26 -7.07 -0.08 -6.43 16 5 C 0.08 1.08 7.16 -82.46 -0.59 0.49 16 6 C -0.08 -0.99 9.87 36.00 0.36 -0.64 16 7 C -0.11 -1.58 6.98 -36.84 -0.26 -1.84 16 8 C 0.62 10.40 7.82 -12.83 -0.10 10.30 16 9 O -0.51 -9.96 15.05 5.20 0.08 -9.88 16 10 N -0.60 -9.50 3.32 -172.63 -0.57 -10.08 16 11 C 0.11 1.35 4.80 -3.18 -0.02 1.33 16 12 C -0.10 -1.24 4.25 -87.19 -0.37 -1.61 16 13 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 14 C -0.11 -1.54 5.59 -25.10 -0.14 -1.68 16 15 C -0.15 -2.41 6.56 -25.69 -0.17 -2.58 16 16 C 0.18 3.41 3.22 -67.11 -0.22 3.20 16 17 H 0.05 1.03 8.09 -51.93 -0.42 0.61 16 18 N -0.73 -17.49 4.80 -52.63 -0.25 -17.74 16 19 C -0.24 -6.58 9.95 -15.06 -0.15 -6.73 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 23 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C -0.11 -1.65 4.03 -87.80 -0.35 -2.00 16 28 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 29 C 0.12 2.07 4.41 -2.88 -0.01 2.06 16 30 O -0.18 -2.30 8.49 4.43 0.04 -2.26 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.10 1.33 6.47 -51.93 -0.34 0.99 16 39 H 0.07 0.81 7.52 -51.93 -0.39 0.42 16 40 H 0.06 0.74 7.66 -51.93 -0.40 0.34 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.94 7.28 -51.93 -0.38 0.56 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 1.46 7.91 -51.93 -0.41 1.04 16 45 H 0.39 9.93 5.36 -40.82 -0.22 9.71 16 46 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.09 1.73 6.31 -51.93 -0.33 1.40 16 48 H 0.08 1.69 8.02 -51.93 -0.42 1.28 16 LS Contribution 381.33 15.07 5.75 5.75 Total: -1.00 -32.59 381.33 -8.86 -41.45 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -7.49 Total: 7.96 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -2.03 Total: 1.32 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -0.18 Total: -61.59 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.12 Total: -12.14 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.59 -8.86 -41.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026394509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.884 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds