Wall clock time and date at job start Tue Mar 31 2020 17:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50706 * 109.47141 * 2 1 4 4 N 1.30008 * 127.33675 * 270.15047 * 3 2 1 5 5 O 1.20658 * 112.30177 * 180.26973 * 4 3 2 6 6 C 1.33487 * 113.15712 * 359.73218 * 5 4 3 7 7 C 1.50696 * 126.82962 * 179.97438 * 6 5 4 8 8 C 1.37361 * 106.34024 * 0.02562 * 6 5 4 9 9 C 1.47403 * 128.56176 * 179.97438 * 8 6 5 10 10 O 1.21611 * 120.00025 * 90.01826 * 9 8 6 11 11 N 1.34771 * 119.99857 * 270.01768 * 9 8 6 12 12 C 1.49214 * 126.05832 * 0.02562 * 11 9 8 13 13 C 1.50352 * 104.85922 * 172.93323 * 12 11 9 14 14 H 1.09001 * 110.04671 * 278.95672 * 13 12 11 15 15 C 1.50991 * 125.57383 * 144.33414 * 13 12 11 16 16 C 1.56399 * 101.59815 * 203.97654 * 15 13 12 17 17 C 1.54944 * 105.61608 * 24.46582 * 16 15 13 18 18 H 1.09002 * 111.17135 * 249.12533 * 17 16 15 19 19 N 1.46498 * 109.34173 * 126.79171 * 17 16 15 20 20 C 1.36945 * 119.99852 * 90.33888 * 19 17 16 21 21 H 1.08001 * 119.99935 * 359.97438 * 20 19 17 22 22 C 1.38804 * 119.99979 * 180.02562 * 20 19 17 23 23 N 1.31624 * 120.00226 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99996 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47366 * 0.02562 * 24 22 20 26 26 H 1.48509 * 109.46997 * 120.00043 * 24 22 20 27 27 H 1.48501 * 109.47105 * 239.99367 * 24 22 20 28 28 C 1.50297 * 104.64655 * 8.41797 * 17 16 15 29 29 H 1.09002 * 109.99891 * 79.41323 * 28 17 16 30 30 C 1.49698 * 126.05662 * 180.02562 * 11 9 8 31 31 H 1.08999 * 109.47160 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47052 * 299.99774 * 1 2 3 33 33 H 1.08998 * 109.47382 * 59.99929 * 1 2 3 34 34 H 1.08997 * 109.46965 * 239.99819 * 2 1 3 35 35 H 1.09005 * 109.47035 * 120.00000 * 2 1 3 36 36 H 1.09002 * 109.47093 * 270.00317 * 7 6 5 37 37 H 1.08997 * 109.47178 * 30.00134 * 7 6 5 38 38 H 1.09002 * 109.47424 * 150.00416 * 7 6 5 39 39 H 1.08996 * 110.35983 * 291.77327 * 12 11 9 40 40 H 1.08991 * 110.36389 * 53.97724 * 12 11 9 41 41 H 1.08998 * 110.99959 * 322.05267 * 15 13 12 42 42 H 1.09001 * 111.00066 * 85.85657 * 15 13 12 43 43 H 1.08996 * 110.19173 * 144.09549 * 16 15 13 44 44 H 1.09004 * 110.18497 * 265.86335 * 16 15 13 45 45 H 0.96996 * 120.00454 * 270.34203 * 19 17 16 46 46 H 0.96995 * 120.00447 * 180.02562 * 23 22 20 47 47 H 1.08994 * 110.84799 * 36.67241 * 30 11 9 48 48 H 1.08999 * 111.01881 * 273.13216 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2927 2.1652 -1.0337 5 8 2.6868 3.2618 -0.7207 6 6 2.7518 3.4389 0.6008 7 6 3.1997 4.6824 1.3246 8 6 2.3303 2.2618 1.1696 9 6 2.2109 1.9231 2.5992 10 8 1.1703 2.1388 3.1904 11 7 3.2551 1.3744 3.2512 12 6 4.5880 1.0538 2.6621 13 6 5.4351 0.6335 3.8311 14 1 5.8124 1.5121 4.3542 15 6 6.4974 -0.4392 3.8053 16 6 6.5574 -0.8585 5.3109 17 6 5.1742 -0.4877 5.9025 18 1 5.2557 0.3433 6.6032 19 7 4.5982 -1.6620 6.5624 20 6 4.8436 -1.8904 7.8902 21 1 5.4620 -1.2050 8.4508 22 6 4.2983 -3.0033 8.5153 23 7 3.5449 -3.8389 7.8321 24 14 4.6335 -3.3152 10.3264 25 1 5.5020 -2.2364 10.8620 26 1 3.3491 -3.3321 11.0718 27 1 5.3151 -4.6250 10.4852 28 6 4.3452 -0.0934 4.7126 29 1 3.9847 -0.9839 4.1978 30 6 3.2831 0.9786 4.6946 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 4.2748 4.6344 1.4981 37 1 2.9682 5.5586 0.7190 38 1 2.6803 4.7536 2.2802 39 1 4.4993 0.2376 1.9452 40 1 5.0123 1.9353 2.1817 41 1 6.1917 -1.2768 3.1785 42 1 7.4535 -0.0342 3.4735 43 1 6.7389 -1.9299 5.3961 44 1 7.3414 -0.3026 5.8251 45 1 4.0431 -2.2778 6.0589 46 1 3.1636 -4.6164 8.2689 47 1 2.3194 0.5749 5.0049 48 1 3.5705 1.8199 5.3252 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026418415.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:44 Heat of formation + Delta-G solvation = 47.092776 kcal Electronic energy + Delta-G solvation = -29446.967653 eV Core-core repulsion = 25505.700588 eV Total energy + Delta-G solvation = -3941.267065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.07940 -40.59253 -38.68458 -35.50701 -35.41149 -33.89070 -33.40448 -31.57024 -30.96700 -29.81161 -28.58663 -28.13982 -25.68926 -25.10528 -24.15352 -23.16461 -22.53713 -20.35184 -20.29241 -19.49618 -19.17937 -17.99584 -17.67221 -17.12049 -16.46458 -16.40719 -15.40550 -15.14094 -14.79858 -14.59911 -14.39568 -13.99626 -13.86478 -13.85109 -13.66067 -13.38671 -13.09102 -12.92787 -12.82560 -12.75837 -12.31374 -11.98730 -11.82029 -11.73215 -11.61351 -11.51739 -11.15425 -11.05899 -10.86138 -10.80841 -10.53581 -10.26539 -10.18893 -10.13635 -10.07424 -9.81319 -9.62296 -9.57474 -8.95653 -8.75897 -7.00360 -5.80272 -3.09563 1.07942 1.70523 2.30193 2.55661 2.93087 3.41094 3.46928 3.49128 3.79028 3.99393 4.07070 4.45529 4.54929 4.64861 4.79080 4.87542 4.98944 4.99886 5.01505 5.05920 5.13800 5.18955 5.25001 5.30502 5.38914 5.48692 5.52526 5.53227 5.62630 5.65775 5.67469 5.79175 5.81052 5.87556 5.90718 5.98201 6.00277 6.05950 6.12363 6.26874 6.31191 6.44330 6.57471 6.73919 7.01506 7.36002 7.67641 7.98599 8.00746 8.37719 9.49358 10.05547 10.39845 11.42165 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017178 B = 0.002845 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.631310 B = 9839.768652 C =10346.977279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C 0.061 3.939 4 N -0.355 5.355 5 O 0.095 5.905 6 C 0.013 3.987 7 C -0.078 4.078 8 C -0.239 4.239 9 C 0.613 3.387 10 O -0.526 6.526 11 N -0.613 5.613 12 C 0.124 3.876 13 C -0.129 4.129 14 H 0.083 0.917 15 C -0.098 4.098 16 C -0.141 4.141 17 C 0.196 3.804 18 H 0.058 0.942 19 N -0.722 5.722 20 C -0.240 4.240 21 H 0.071 0.929 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.905 3.095 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.118 4.118 29 H 0.083 0.917 30 C 0.130 3.870 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.086 0.914 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.265 14.302 -16.988 22.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 C -0.102 4.102 4 N -0.061 5.061 5 O 0.033 5.967 6 C -0.051 4.051 7 C -0.135 4.135 8 C -0.246 4.246 9 C 0.399 3.601 10 O -0.403 6.403 11 N -0.347 5.347 12 C 0.002 3.998 13 C -0.149 4.149 14 H 0.101 0.899 15 C -0.136 4.136 16 C -0.182 4.182 17 C 0.084 3.916 18 H 0.076 0.924 19 N -0.362 5.362 20 C -0.371 4.371 21 H 0.089 0.911 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.736 3.264 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.138 4.138 29 H 0.101 0.899 30 C 0.010 3.990 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.104 0.896 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.602 14.294 -17.823 22.903 hybrid contribution 0.001 -0.578 1.522 1.628 sum 1.603 13.716 -16.301 21.364 Atomic orbital electron populations 1.21731 0.93352 1.02756 1.02707 1.20020 0.97019 0.87346 1.04210 1.24758 1.00335 0.98676 0.86405 1.73595 1.16610 0.92587 1.23305 1.84523 1.62647 1.26951 1.22531 1.24565 0.99062 0.97669 0.83770 1.20460 1.02792 0.90830 0.99465 1.21889 1.12146 0.95379 0.95217 1.16446 0.82595 0.77410 0.83669 1.90847 1.27950 1.53572 1.67895 1.49801 1.12546 1.60642 1.11751 1.21236 0.82403 1.00186 0.95944 1.22182 0.96762 0.99520 0.96429 0.89901 1.21763 0.96708 0.96595 0.98564 1.23656 0.99563 1.02272 0.92676 1.19967 0.89904 0.91023 0.90656 0.92415 1.42535 1.59574 1.25358 1.08755 1.19282 1.25407 1.06225 0.86235 0.91095 1.24741 1.00238 0.97776 0.98074 1.69665 1.37667 1.15271 1.35363 0.86151 0.77366 0.77634 0.85225 1.20548 1.21876 1.21908 1.22542 0.94335 0.97437 0.99465 0.89875 1.21557 1.00736 0.97150 0.79574 0.91221 0.91791 0.92428 0.89473 0.89324 0.88741 0.89091 0.88742 0.91332 0.91405 0.91612 0.92150 0.90554 0.92681 0.78168 0.93533 0.89608 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.90 37.16 0.37 -1.14 16 2 C -0.05 -0.51 6.55 -27.88 -0.18 -0.69 16 3 C 0.06 0.74 6.84 -79.77 -0.55 0.20 16 4 N -0.36 -4.45 12.01 34.78 0.42 -4.03 16 5 O 0.10 1.07 11.06 18.67 0.21 1.27 16 6 C 0.01 0.13 7.55 -34.63 -0.26 -0.13 16 7 C -0.08 -0.51 10.33 36.00 0.37 -0.13 16 8 C -0.24 -2.99 5.46 -102.89 -0.56 -3.55 16 9 C 0.61 8.89 7.66 -12.53 -0.10 8.80 16 10 O -0.53 -9.54 17.44 5.27 0.09 -9.45 16 11 N -0.61 -8.08 3.43 -172.84 -0.59 -8.68 16 12 C 0.12 1.34 6.39 -3.86 -0.02 1.32 16 13 C -0.13 -1.50 2.75 -90.27 -0.25 -1.75 16 14 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 15 C -0.10 -1.18 6.72 -25.91 -0.17 -1.35 16 16 C -0.14 -2.20 6.68 -23.88 -0.16 -2.36 16 17 C 0.20 3.49 3.38 -68.25 -0.23 3.26 16 18 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 19 N -0.72 -16.96 5.02 -53.74 -0.27 -17.23 16 20 C -0.24 -6.38 9.96 -15.06 -0.15 -6.53 16 21 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -27.50 13.06 55.49 0.72 -26.77 16 24 Si 0.90 21.92 29.55 -169.99 -5.02 16.90 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 C -0.12 -1.76 2.47 -90.33 -0.22 -1.98 16 29 H 0.08 1.36 7.92 -51.93 -0.41 0.95 16 30 C 0.13 1.90 6.81 -3.31 -0.02 1.88 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.68 8.11 -51.93 -0.42 0.26 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 1.38 7.95 -51.93 -0.41 0.97 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.38 9.74 7.67 -40.82 -0.31 9.43 16 46 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.09 1.43 8.09 -51.93 -0.42 1.01 16 48 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 395.79 15.07 5.96 5.96 Total: -1.00 -31.88 395.79 -8.58 -40.46 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -7.86 Total: 6.17 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -2.24 Total: -4.59 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.28 Total: -56.71 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.30 Total: -8.18 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.88 -8.58 -40.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026418415.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.551 kcal (2) G-P(sol) polarization free energy of solvation -31.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds