Wall clock time and date at job start Tue Mar 31 2020 18:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47291 * 2 1 4 4 C 1.50703 * 109.47164 * 120.00513 * 2 1 3 5 5 C 1.38365 * 119.40269 * 274.97783 * 4 2 1 6 6 C 1.38328 * 119.45589 * 179.97438 * 5 4 2 7 7 C 1.39982 * 118.35249 * 0.03740 * 6 5 4 8 8 C 1.47535 * 120.59818 * 180.25292 * 7 6 5 9 9 O 1.21585 * 119.99788 * 179.72235 * 8 7 6 10 10 N 1.34773 * 119.99785 * 359.72437 * 8 7 6 11 11 C 1.46501 * 119.99982 * 179.97438 * 10 8 7 12 12 C 1.52990 * 109.47354 * 179.97438 * 11 10 8 13 13 H 1.09004 * 110.88813 * 54.29943 * 12 11 10 14 14 C 1.55159 * 111.00606 * 178.18081 * 12 11 10 15 15 C 1.54325 * 102.94105 * 153.57578 * 14 12 11 16 16 N 1.47019 * 107.27366 * 337.80633 * 15 14 12 17 17 C 1.36935 * 125.64674 * 178.97330 * 16 15 14 18 18 H 1.08004 * 120.00093 * 179.97438 * 17 16 15 19 19 C 1.38809 * 120.00533 * 359.97438 * 17 16 15 20 20 N 1.31628 * 119.99772 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00553 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47115 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47207 * 120.00076 * 21 19 17 24 24 H 1.48501 * 109.47434 * 240.00017 * 21 19 17 25 25 C 1.47462 * 108.72145 * 358.97778 * 16 15 14 26 26 C 1.40285 * 118.80591 * 359.97438 * 7 6 5 27 27 O 1.35424 * 119.79889 * 180.02562 * 26 7 6 28 28 N 1.31877 * 119.41417 * 94.99192 * 4 2 1 29 29 H 1.09005 * 109.46969 * 300.00255 * 1 2 3 30 30 H 1.09002 * 109.46966 * 59.99699 * 1 2 3 31 31 H 1.09002 * 109.47239 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46969 * 239.99745 * 2 1 3 33 33 H 1.09000 * 109.46698 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47361 * 300.00059 * 3 2 1 35 35 H 1.08994 * 109.46867 * 60.00144 * 3 2 1 36 36 H 1.07997 * 120.27028 * 0.02562 * 5 4 2 37 37 H 1.08007 * 120.82386 * 180.02562 * 6 5 4 38 38 H 0.96997 * 119.99907 * 359.97438 * 10 8 7 39 39 H 1.08995 * 109.47305 * 300.00177 * 11 10 8 40 40 H 1.09006 * 109.46824 * 59.99809 * 11 10 8 41 41 H 1.08997 * 110.71605 * 271.94033 * 14 12 11 42 42 H 1.08998 * 110.71890 * 35.03771 * 14 12 11 43 43 H 1.09003 * 109.87817 * 97.22681 * 15 14 12 44 44 H 1.09002 * 109.87955 * 218.23243 * 15 14 12 45 45 H 0.97001 * 120.00281 * 180.02562 * 20 19 17 46 46 H 1.09004 * 110.34954 * 265.24791 * 25 16 15 47 47 H 1.09000 * 110.40588 * 142.91692 * 25 16 15 48 48 H 0.96699 * 114.00115 * 90.00399 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.1602 -0.0083 2.4158 6 6 2.6207 -0.6595 3.5459 7 6 2.9437 -2.0179 3.4453 8 6 3.4339 -2.7623 4.6209 9 8 3.7064 -3.9431 4.5224 10 7 3.5796 -2.1334 5.8040 11 6 4.0659 -2.8727 6.9716 12 6 4.1395 -1.9326 8.1762 13 1 3.1808 -1.4422 8.3456 14 6 4.6081 -2.6912 9.4460 15 6 5.2622 -1.5783 10.2918 16 7 5.6380 -0.4948 9.3719 17 6 6.2295 0.6871 9.7303 18 1 6.4676 1.4224 8.9759 19 6 6.5233 0.9402 11.0632 20 7 6.2336 0.0439 11.9826 21 14 7.3309 2.5520 11.5519 22 1 7.5529 3.3817 10.3406 23 1 6.4479 3.2815 12.4972 24 1 8.6345 2.2741 12.2066 25 6 5.2724 -0.8909 7.9994 26 6 2.7871 -2.6600 2.2079 27 8 3.0931 -3.9738 2.0880 28 7 2.3425 -1.9903 1.1581 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4423 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 1.9018 1.0394 2.4584 37 1 2.7286 -0.1330 4.4828 38 1 3.3625 -1.1913 5.8824 39 1 3.3835 -3.6936 7.1919 40 1 5.0583 -3.2718 6.7614 41 1 3.7576 -3.1255 9.9715 42 1 5.3350 -3.4615 9.1887 43 1 4.5513 -1.2079 11.0304 44 1 6.1489 -1.9665 10.7930 45 1 6.4385 0.2208 12.9140 46 1 6.1269 -1.3418 7.4947 47 1 4.9110 -0.0290 7.4385 48 1 2.3521 -4.5682 2.2686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028844993.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:50 Heat of formation + Delta-G solvation = -24.824404 kcal Electronic energy + Delta-G solvation = -28180.268997 eV Core-core repulsion = 24235.883369 eV Total energy + Delta-G solvation = -3944.385628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.20814 -39.38220 -37.88314 -37.45653 -35.47317 -34.66747 -33.10799 -32.34447 -30.31140 -29.61572 -28.25360 -27.62158 -25.84861 -24.96333 -23.76858 -23.26447 -21.53681 -20.65523 -19.99710 -19.89119 -18.65110 -17.86499 -17.36360 -16.80796 -16.25316 -15.72441 -15.46809 -15.30079 -14.76481 -14.71079 -14.51908 -14.35018 -13.99457 -13.69469 -13.53384 -13.17457 -13.08311 -12.83647 -12.47060 -12.37952 -12.04984 -12.00796 -11.82734 -11.77523 -11.60061 -11.42776 -11.32377 -10.92821 -10.83998 -10.47991 -10.26976 -10.22926 -10.10899 -9.99415 -9.90000 -9.69724 -9.56440 -9.21794 -8.95420 -8.63364 -6.86491 -5.74397 -3.08114 0.27795 0.77473 2.67926 3.01772 3.22194 3.37147 3.42571 3.45167 3.50128 4.02263 4.23376 4.44208 4.46694 4.57987 4.61955 4.72252 4.75066 5.03335 5.09840 5.18470 5.19150 5.19368 5.35058 5.37551 5.39879 5.47149 5.51384 5.53053 5.64877 5.70127 5.78571 5.85139 5.85557 6.00338 6.02067 6.07471 6.31132 6.37005 6.44871 6.50069 6.64123 6.86937 7.26450 7.43985 7.53190 7.56499 7.60191 7.80030 8.14860 8.22864 9.18986 9.79320 10.45227 11.37390 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014586 B = 0.002382 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.146356 B =11752.562237 C =13299.524814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.051 4.051 3 C -0.150 4.150 4 C 0.182 3.818 5 C -0.189 4.189 6 C -0.025 4.025 7 C -0.208 4.208 8 C 0.560 3.440 9 O -0.523 6.523 10 N -0.720 5.720 11 C 0.134 3.866 12 C -0.118 4.118 13 H 0.079 0.921 14 C -0.134 4.134 15 C 0.177 3.823 16 N -0.606 5.606 17 C -0.229 4.229 18 H 0.078 0.922 19 C -0.009 4.009 20 N -0.921 5.921 21 Si 0.912 3.088 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.142 3.858 26 C 0.373 3.627 27 O -0.459 6.459 28 N -0.508 5.508 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.399 0.601 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.046 0.954 44 H 0.043 0.957 45 H 0.252 0.748 46 H 0.020 0.980 47 H 0.034 0.966 48 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.719 -0.937 -21.564 25.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.070 4.070 3 C -0.207 4.207 4 C 0.044 3.956 5 C -0.209 4.209 6 C -0.051 4.051 7 C -0.215 4.215 8 C 0.346 3.654 9 O -0.401 6.401 10 N -0.371 5.371 11 C 0.010 3.990 12 C -0.138 4.138 13 H 0.098 0.902 14 C -0.173 4.173 15 C 0.052 3.948 16 N -0.333 5.333 17 C -0.357 4.357 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.743 3.257 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.015 3.985 26 C 0.193 3.807 27 O -0.266 6.266 28 N -0.227 5.227 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.234 0.766 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.038 0.962 47 H 0.053 0.947 48 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -12.939 -2.015 -22.293 25.855 hybrid contribution 0.106 1.499 1.361 2.027 sum -12.833 -0.516 -20.932 24.558 Atomic orbital electron populations 1.21810 0.93142 1.02503 1.02470 1.20170 0.96498 0.95617 0.94748 1.21954 1.01657 0.94416 1.02682 1.21212 0.91214 0.88235 0.94967 1.21948 1.03713 1.02218 0.92983 1.21793 0.91628 0.92328 0.99359 1.21173 1.09032 0.95977 0.95285 1.17795 0.78427 0.86822 0.82402 1.90810 1.49745 1.15105 1.84393 1.45977 1.67314 1.14169 1.09690 1.21437 0.99779 0.94366 0.83391 1.22624 1.00179 0.97006 0.93998 0.90223 1.22858 0.99932 0.98996 0.95559 1.21144 0.97708 0.85261 0.90645 1.44493 1.71311 1.16925 1.00537 1.19092 1.31925 0.92475 0.92199 0.90448 1.24816 1.01473 0.98449 0.95796 1.69978 1.52682 1.33870 1.00373 0.86044 0.78751 0.82761 0.78194 1.20522 1.21750 1.21735 1.21585 0.93521 0.94388 0.88965 1.19122 0.89134 0.86376 0.86043 1.84726 1.38734 1.11356 1.91828 1.67100 1.13886 1.09786 1.31916 0.92239 0.91548 0.92215 0.88854 0.92087 0.91508 0.91824 0.83505 0.83695 0.76579 0.91451 0.91112 0.91948 0.92136 0.93547 0.93862 0.93781 0.96246 0.94740 0.73574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 9.18 37.16 0.34 -0.42 16 2 C -0.05 -0.34 3.23 -91.77 -0.30 -0.63 16 3 C -0.15 -0.75 8.61 37.15 0.32 -0.43 16 4 C 0.18 1.67 5.79 -82.52 -0.48 1.19 16 5 C -0.19 -1.50 9.15 -39.50 -0.36 -1.86 16 6 C -0.03 -0.23 9.64 -38.90 -0.37 -0.60 16 7 C -0.21 -2.46 5.90 -104.68 -0.62 -3.08 16 8 C 0.56 7.74 7.77 -12.47 -0.10 7.65 16 9 O -0.52 -8.86 15.19 -16.48 -0.25 -9.11 16 10 N -0.72 -9.01 5.40 -61.35 -0.33 -9.34 16 11 C 0.13 1.88 5.12 -4.05 -0.02 1.86 16 12 C -0.12 -1.89 3.07 -88.47 -0.27 -2.16 16 13 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 14 C -0.13 -2.40 6.42 -24.89 -0.16 -2.56 16 15 C 0.18 4.21 5.37 -3.07 -0.02 4.20 16 16 N -0.61 -15.16 3.40 -170.04 -0.58 -15.73 16 17 C -0.23 -6.28 10.28 -15.06 -0.15 -6.44 16 18 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 19 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 20 N -0.92 -26.87 10.31 55.49 0.57 -26.30 16 21 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 C 0.14 2.77 6.56 -2.51 -0.02 2.76 16 26 C 0.37 4.67 7.77 -16.61 -0.13 4.55 16 27 O -0.46 -5.82 11.66 -39.73 -0.46 -6.28 16 28 N -0.51 -5.94 10.28 -9.21 -0.09 -6.04 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.06 0.26 6.47 -51.93 -0.34 -0.07 16 36 H 0.15 0.77 6.28 -52.49 -0.33 0.44 16 37 H 0.15 0.97 6.52 -52.48 -0.34 0.63 16 38 H 0.40 4.16 6.53 -40.82 -0.27 3.90 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 1.09 8.03 -51.93 -0.42 0.67 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 43 H 0.05 1.22 7.38 -51.93 -0.38 0.83 16 44 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.02 0.40 7.96 -51.93 -0.41 -0.01 16 47 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.40 3.39 9.06 45.56 0.41 3.80 16 LS Contribution 387.79 15.07 5.84 5.84 Total: -1.00 -34.61 387.79 -9.41 -44.01 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.66 Total: 2.43 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -2.43 Total: 3.67 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -0.43 Total: -57.41 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.71 Total: -15.39 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.61 -9.41 -44.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028844993.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.189 kcal (2) G-P(sol) polarization free energy of solvation -34.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds